Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Reverse (-)

60938836 .. 60939186

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTCTAGAGTGGATGGTGCTAGGCTACGCCATCGGCGTAGAGGCCATGATGGTCCTCCTCCTCACACTCATTGGCCTCGACTGCCTCCCCAAGGGCCTCATGGCTGTCACGCAAAACCTCCTCAAGCCCTTCCTCTCGGTGGTGCCCTTCTGCCTCTTCCTTCTCATGGACATCTACTGGAAGTACGAGAATCGGCCGAACTGCGACAACAACTCTTGCACGCTGTTCGAGCACCTCTGCCACCAGAAGTCCATCATGAAGAGCCAATGCAACACCCTTCTCATAGACAGGCCACTGAGTCGAATTTGTTTGTGTGGTTTTCTGATCTTGAAATGCCGATCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.25

Weight (kDa)

8.05

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	306
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	94, 142, 169
AgsI	TTSAA	1 cut(s)	334
Alw21I	GWGCWC	1 cut(s)	237
AoxI	GGCC	5 cut(s)	45, 76, 97, 197, 293
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	55, 97
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	237
BccI	CCATC	4 cut(s)	10, 41, 46, 263
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BfaI	CTAG	2 cut(s)	8, 23
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 97
BmiI	GGNNCC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 142, 169
Bse1I	ACTGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	3 cut(s)	94, 142, 169
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	3 cut(s)	50, 53, 113
BseSI	GKGCMC	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	5 cut(s)	47, 78, 99, 199, 295
BshNI	GGYRCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	94, 142, 169
BsnI	GGCC	5 cut(s)	47, 78, 99, 199, 295
Bsp1286I	GDGCHC	2 cut(s)	150, 237
Bsp143I	GATC	2 cut(s)	327, 341
BspANI	GGCC	5 cut(s)	47, 78, 99, 199, 295
BspCNI	CTCAG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	327, 341
BssT1I	CCWWGG	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	164, 257
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	299
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	21
BstKTI	GATC	2 cut(s)	330, 344
BstMBI	GATC	2 cut(s)	327, 341
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 232
BstSLI	GKGCMC	1 cut(s)	150
BstZI	CGGCCG	1 cut(s)	197
BsuRI	GGCC	5 cut(s)	47, 78, 99, 199, 295
BtsCI	GGATG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	224
CciI	TCATGA	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	55, 97
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	49, 103, 169, 259
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	2 cut(s)	329, 343
DpnII	GATC	2 cut(s)	327, 341
EaeI	YGGCCR	1 cut(s)	197
EagI	CGGCCG	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	164, 257
EarI	CTCTTC	2 cut(s)	164, 257
EclXI	CGGCCG	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	4 cut(s)	52, 106, 172, 262
FaiI	YATR	5 cut(s)	50, 104, 170, 260, 287
FatI	CATG	4 cut(s)	48, 102, 168, 258
FokI	GGATG	1 cut(s)	28
FspBI	CTAG	2 cut(s)	8, 23
HaeIII	GGCC	5 cut(s)	47, 78, 99, 199, 295
Hin1II	CATG	4 cut(s)	52, 106, 172, 262
HinfI	GANTC	2 cut(s)	193, 301
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	3 cut(s)	8, 259, 331
HpyAV	CCTTC	4 cut(s)	142, 160, 173, 290
HpyCH4V	TGCA	2 cut(s)	222, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 232
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	52, 106, 172, 262
Kzo9I	GATC	2 cut(s)	327, 341
LguI	GCTCTTC	1 cut(s)	257
LpnPI	CCDG	3 cut(s)	166, 260, 277
MaeI	CTAG	2 cut(s)	8, 23
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	329, 343
MboI	GATC	2 cut(s)	327, 341
MboII	GAAGA	2 cut(s)	151, 274
MhlI	GDGCHC	2 cut(s)	150, 237
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	310
MseI	TTAA	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	84, 232
NdeII	GATC	2 cut(s)	327, 341
NlaIII	CATG	4 cut(s)	52, 106, 172, 262
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	109
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	55, 97
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	349
Sau3AI	GATC	2 cut(s)	327, 341
Sau96I	GGNCC	2 cut(s)	55, 97
SchI	GAGTC	1 cut(s)	310
SduI	GDGCHC	2 cut(s)	150, 237
SetI	ASST	2 cut(s)	123, 240
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	306
SspMI	CTAG	2 cut(s)	8, 23
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	3 cut(s)	81, 231, 304
TasI	AATT	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	306
XbaI	TCTAGA	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	2 cut(s)	8, 23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.