Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Forward (+)

25034755 .. 25035012

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1237600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGATATTGAAGTGGTTTGTCTTTGGCTACGCCGCCGTTGTGGAGGCGATTACGGTGCTCATTCTCACGATCCCCAGCCTCGACGGCCTCCGCAAGTGCCACATCACCGCCACCCACAACCTCCTCAAACCATTTCTATCAGTGATGTCGTTCTACCTCTTCTTGCTTATAGACATCTATTGGAAGTACGAGACTCACCCAAGTTGCCATGGAAACTCCTGTTGCACCATGTACGTCTGCTGCACCATGTACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

9.79

Weight (kDa)

7.62

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	33, 91, 108
AclWI	GGATC	1 cut(s)	64
AfaI	GTAC	3 cut(s)	188, 233, 251
AgsI	TTSAA	1 cut(s)	10
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	97, 188
BauI	CACGAG	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	227
BceAI	ACGGC	2 cut(s)	20, 100
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BcoDI	GTCTC	1 cut(s)	185
BglI	GCCNNNNNGGC	1 cut(s)	84
BisI	GCNGC	2 cut(s)	33, 241
BlsI	GCNGC	2 cut(s)	34, 242
BsaJI	CCNNGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	227
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	3 cut(s)	33, 91, 108
BspANI	GGCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	187, 232, 250
CviAII	CATG	3 cut(s)	209, 229, 247
CviJI	RGCY	3 cut(s)	27, 78, 87
CviKI_1	RGCY	3 cut(s)	27, 78, 87
CviQI	GTAC	3 cut(s)	187, 232, 250
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	212, 232, 250
FaiI	YATR	4 cut(s)	170, 210, 230, 248
FatI	CATG	3 cut(s)	208, 228, 246
Fnu4HI	GCNGC	2 cut(s)	33, 241
Fsp4HI	GCNGC	2 cut(s)	33, 241
GluI	GCNGC	2 cut(s)	33, 241
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	212, 232, 250
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	2 cut(s)	97, 188
Hpy188III	TCNNGA	2 cut(s)	67, 255
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	225, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	212, 232, 250
Kzo9I	GATC	1 cut(s)	69
LpnPI	CCDG	2 cut(s)	88, 232
Lsp1109I	GCAGC	1 cut(s)	227
MaeII	ACGT	1 cut(s)	234
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	6 cut(s)	37, 89, 98, 131, 134, 167
MwoI	GCNNNNNNNGC	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	3 cut(s)	212, 232, 250
PkrI	GCNGC	2 cut(s)	34, 242
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	74
RsaI	GTAC	3 cut(s)	188, 233, 251
RsaNI	GTAC	3 cut(s)	187, 232, 250
SatI	GCNGC	2 cut(s)	33, 241
Sau3AI	GATC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	3 cut(s)	123, 159, 237
SsiI	CCGC	3 cut(s)	33, 91, 108
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	81
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	35
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	240
TspRI	CASTG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.