Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Forward (+)

2146660 .. 2147052

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1029700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCATTGGAGTGGGTTGTCCTCGGCTACGCCGCCGCCGCGGAGGCGATCATGGTGCTCCTTCTCACGATCCCCGGCCTCGACGGCCTCCGCAAGGGCCTCGTCACCGTCACCCGCAACCTCCTCAAACCGTTTCTGTCGGTGGTGCCGTTCTGCCTCTTCTTGCTCATGGACATCTACTGGAAGTACGAGACTCGCCCGAGCTGCCATGGAGACTCCTGCACTCCCTCGGAGCACCTCCGCCACCAGAAGTCAATCATGAAGAGCCAGCGCAATGCGCTCTTGATCGCCGCCGCCTTGATCTTCTACTGGCTCCTCTACACCGTCACCCACCTCGTCGTCCGCATCGAGCAGCTGAACCAGCGCGTGGAGCGCTTGAAGAATCGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.94

Weight (kDa)

9.33

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccII	CGCG	3 cut(s)	41, 366, 387
AclWI	GGATC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	374
AfiI	CCNNNNNNNGG	2 cut(s)	94, 367
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	2 cut(s)	204, 355
AluI	AGCT	2 cut(s)	204, 355
Alw21I	GWGCWC	2 cut(s)	60, 237
Alw26I	GTCTC	2 cut(s)	185, 207
AlwI	GGATC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	374
AoxI	GGCC	3 cut(s)	76, 85, 97
ApeKI	GCWGC	2 cut(s)	204, 352
AspLEI	GCGC	4 cut(s)	273, 280, 366, 375
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	3 cut(s)	97, 103, 319
AvaI	CYCGRG	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	60, 237
BbvI	GCAGC	2 cut(s)	191, 364
BceAI	ACGGC	2 cut(s)	100, 133
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 82, 116
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	185, 207
BfoI	RGCGCY	1 cut(s)	376
BglI	GCCNNNNNGGC	2 cut(s)	44, 84
BisI	GCNGC	7 cut(s)	33, 36, 39, 205, 291, 294, 353
BlsI	GCNGC	7 cut(s)	34, 37, 40, 206, 292, 295, 354
Bme1390I	CCNGG	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	147, 314
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	75
BsaJI	CCNNGG	5 cut(s)	22, 39, 73, 208, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 367
Bse1I	ACTGG	2 cut(s)	185, 314
Bse3DI	GCAATG	1 cut(s)	280
BseDI	CCNNGG	5 cut(s)	22, 39, 73, 208, 228
BseLI	CCNNNNNNNGG	2 cut(s)	94, 367
BseMI	GCAATG	1 cut(s)	280
BseNI	ACTGG	2 cut(s)	185, 314
BseRI	GAGGAG	2 cut(s)	113, 305
BseXI	GCAGC	2 cut(s)	191, 364
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	3 cut(s)	41, 366, 387
BshFI	GGCC	3 cut(s)	78, 87, 99
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	60, 237
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	94, 367
BsmAI	GTCTC	2 cut(s)	185, 207
BsnI	GGCC	3 cut(s)	78, 87, 99
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	60, 237
Bsp143I	GATC	4 cut(s)	48, 69, 285, 300
Bsp19I	CCATGG	1 cut(s)	208
Bsp68I	TCGCGA	1 cut(s)	387
BspANI	GGCC	3 cut(s)	78, 87, 99
BspFNI	CGCG	3 cut(s)	41, 366, 387
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	147, 314
BspPI	GGATC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	185, 314
BssECI	CCNNGG	5 cut(s)	22, 39, 73, 208, 228
BssMI	GATC	4 cut(s)	48, 69, 285, 300
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	109, 132, 325
Bst6I	CTCTTC	2 cut(s)	164, 257
BstC8I	GCNNGC	1 cut(s)	269
BstDSI	CCRYGG	2 cut(s)	39, 208
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstFNI	CGCG	3 cut(s)	41, 366, 387
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	4 cut(s)	273, 280, 366, 375
BstKTI	GATC	4 cut(s)	51, 72, 288, 303
BstMAI	GTCTC	2 cut(s)	185, 207
BstMBI	GATC	4 cut(s)	48, 69, 285, 300
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 44, 84, 204, 277, 361, 370, 372
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	3 cut(s)	41, 366, 387
BstV1I	GCAGC	2 cut(s)	191, 364
BsuRI	GGCC	3 cut(s)	78, 87, 99
BtgI	CCRYGG	2 cut(s)	39, 208
BtuMI	TCGCGA	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	4 cut(s)	273, 280, 366, 375
Cfr13I	GGNCC	1 cut(s)	97
Cfr42I	CCGCGG	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	52, 169, 209, 259
CviJI	RGCY	8 cut(s)	27, 78, 87, 99, 204, 267, 313, 355
CviKI_1	RGCY	8 cut(s)	27, 78, 87, 99, 204, 267, 313, 355
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	4 cut(s)	50, 71, 287, 302
DpnII	GATC	4 cut(s)	48, 69, 285, 300
Eam1104I	CTCTTC	2 cut(s)	164, 257
EarI	CTCTTC	2 cut(s)	164, 257
EciI	GGCGGA	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	208
Eco47III	AGCGCT	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	4 cut(s)	55, 172, 212, 262
FaiI	YATR	4 cut(s)	53, 170, 210, 260
FatI	CATG	4 cut(s)	51, 168, 208, 258
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	7 cut(s)	33, 36, 39, 205, 291, 294, 353
Fsp4HI	GCNGC	7 cut(s)	33, 36, 39, 205, 291, 294, 353
GlaI	GCGC	4 cut(s)	272, 279, 365, 374
GluI	GCNGC	7 cut(s)	33, 36, 39, 205, 291, 294, 353
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	78, 87, 99
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	4 cut(s)	273, 280, 366, 375
Hin1II	CATG	4 cut(s)	55, 172, 212, 262
Hin6I	GCGC	4 cut(s)	271, 278, 364, 373
HinP1I	GCGC	4 cut(s)	271, 278, 364, 373
HinfI	GANTC	3 cut(s)	193, 215, 382
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	97, 103, 319
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	67, 259, 283, 386
Hpy99I	CGWCG	2 cut(s)	86, 341
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	3 cut(s)	109, 132, 325
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 44, 84, 204, 277, 361, 370, 372
Hsp92II	CATG	4 cut(s)	55, 172, 212, 262
HspAI	GCGC	4 cut(s)	271, 278, 364, 373
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	48, 69, 285, 300
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	4 cut(s)	63, 232, 318, 370
LpnPI	CCDG	7 cut(s)	88, 166, 232, 260, 281, 295, 374
Lsp1109I	GCAGC	2 cut(s)	191, 364
LweI	GCATC	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	103, 109, 325
MalI	GATC	4 cut(s)	50, 71, 287, 302
MboI	GATC	4 cut(s)	48, 69, 285, 300
MboII	GAAGA	4 cut(s)	151, 274, 295, 391
MhlI	GDGCHC	2 cut(s)	60, 237
MlyI	GAGTC	2 cut(s)	187, 209
MslI	CAYNNNNRTG	1 cut(s)	10
MspA1I	CMGCKG	2 cut(s)	41, 355
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	3 cut(s)	41, 366, 387
MwoI	GCNNNNNNNGC	8 cut(s)	38, 44, 84, 204, 277, 361, 370, 372
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	4 cut(s)	48, 69, 285, 300
NlaIII	CATG	4 cut(s)	55, 172, 212, 262
NlaIV	GGNNCC	2 cut(s)	147, 314
NmuCI	GTSAC	3 cut(s)	103, 109, 325
NruI	TCGCGA	1 cut(s)	387
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 345
PfeI	GAWTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	7 cut(s)	34, 37, 40, 206, 292, 295, 354
PleI	GAGTC	2 cut(s)	187, 209
PpsI	GAGTC	2 cut(s)	187, 209
PspN4I	GGNNCC	2 cut(s)	147, 314
PspPI	GGNCC	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	355
RruI	TCGCGA	1 cut(s)	387
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	10
SacII	CCGCGG	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	7 cut(s)	33, 36, 39, 205, 291, 294, 353
Sau3AI	GATC	4 cut(s)	48, 69, 285, 300
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	2 cut(s)	187, 209
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	60, 237
SetI	ASST	5 cut(s)	123, 206, 240, 336, 357
SfaNI	GCATC	1 cut(s)	354
SfiI	GGCCNNNNNGGCC	1 cut(s)	84
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	109, 132, 325
TaqI	TCGA	2 cut(s)	81, 348
TauI	GCSGC	5 cut(s)	35, 38, 41, 293, 296
TfiI	GAWTC	1 cut(s)	382
TseFI	GTSAC	3 cut(s)	103, 109, 325
TseI	GCWGC	2 cut(s)	204, 352
Tsp45I	GTSAC	3 cut(s)	103, 109, 325
TspDTI	ATGAA	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	367
XagI	CCTNNNNNAGG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.