Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Reverse (-)

35771855 .. 35772115

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1246100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTGCTCCTCTTCACGATCCCCGGCCTTGACGGCCTCCGCAAGGGCCTCATCACCGTCACACGCAACCTCCTCAAACTGTTTCTCTCGGTGGTGCCGTTCTGCCTCATTTTGCTCATGGACATCTATTGGAAGCACGAGACTCGCCCGAGCTGCGAAGGCGACTCCTGCACTCCATTGGAGCACCTCCACCATCAGAGCTTGACGAAGATGAAGAAGAAGACGCAGAAGAACTGGATGTTGTCATACCAGGCCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.96

Weight (kDa)

9.37

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	153, 201
AluI	AGCT	2 cut(s)	153, 201
Alw21I	GWGCWC	2 cut(s)	9, 186
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	4 cut(s)	25, 34, 46, 252
ApeKI	GCWGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	2 cut(s)	9, 186
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	201
BceAI	ACGGC	2 cut(s)	49, 82
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	24, 251
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	24, 251
BpiI	GAAGAC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	154
BshFI	GGCC	4 cut(s)	27, 36, 48, 254
BshNI	GGYRCC	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	9, 186
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	4 cut(s)	27, 36, 48, 254
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	9, 186
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	4 cut(s)	27, 36, 48, 254
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	18
BssSI	CACGAG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	58, 81
Bst6I	CTCTTC	1 cut(s)	17
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 153, 159, 168
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	22, 249
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	227
BsuRI	GGCC	4 cut(s)	27, 36, 48, 254
BtsCI	GGATG	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	232
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	6 cut(s)	27, 36, 48, 153, 201, 254
CviKI_1	RGCY	6 cut(s)	27, 36, 48, 153, 201, 254
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco147I	AGGCCT	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	121
FaiI	YATR	2 cut(s)	119, 247
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	154
HaeIII	GGCC	4 cut(s)	27, 36, 48, 254
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	2 cut(s)	142, 164
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	58, 81
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 153, 159, 168
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	12, 181
LpnPI	CCDG	4 cut(s)	37, 181, 220, 236
Lsp1109I	GCAGC	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	6 cut(s)	4, 220, 226, 229, 232, 241
MhlI	GDGCHC	2 cut(s)	9, 186
MlyI	GAGTC	2 cut(s)	136, 158
MnlI	CCTC	7 cut(s)	20, 47, 59, 80, 83, 116, 197
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	24, 251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	4 cut(s)	33, 153, 159, 168
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	2 cut(s)	136, 158
PpsI	GAGTC	2 cut(s)	136, 158
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	46
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	136, 158
ScrFI	CCNGG	2 cut(s)	24, 251
SduI	GDGCHC	2 cut(s)	9, 186
SetI	ASST	4 cut(s)	72, 155, 189, 203
SfiI	GGCCNNNNNGGCC	1 cut(s)	33
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	40
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	22, 249
TaaI	ACNGT	2 cut(s)	58, 81
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.