Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Forward (+)

1131778 .. 1132299

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGTTGGAGTGGGTTGTCCTCGGATACGCCGCCGCCGCGGAGGCGATCATGGTGCTCCTCCTCACGATCCCCGGCCTCGACGGCCTCCGCAAGGGCCTCGTCACGGTCACCCGCAACCTCCTCAAACCGTTTCTCTCGGTAGTGCCGTTCTGCCTTTTCTTGCTCATGGACATCTACTGGAAGTACGAGACTCGCCCGAGCTGCGAAGGCGACTCCTGCACTCCCTCGGAGCACCTCCGCCACGAGAAGTCGATCGATGAAGAGCCAGCGCAACGCGCTCTTGATCGCCGCCGCCTTGATCTTCTACTGGCTCCTTTACACCGTCACCCACCTCGTTGTCCGCATCGAGCAGTTGAACCAGCGCGTCGAGCGCTTGAAGAATCGCGACTGATTCCGCTCGGTTTGCATTTCGATTTCCAAGCCTTTAGCTTTATTTTGTGTTTCGATGGAGAGATTATTGGGTTAATTGCACTTCTTTTATATCGGATTTTGGAATTTCTGTGTTATGTGATGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.81

Weight (kDa)

6.3

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	400
AccII	CGCG	4 cut(s)	41, 279, 367, 388
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	497
AfaI	GTAC	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	375
AfiI	CCNNNNNNNGG	2 cut(s)	94, 106
AgsI	TTSAA	2 cut(s)	359, 380
AluBI	AGCT	2 cut(s)	204, 432
AluI	AGCT	2 cut(s)	204, 432
Alw21I	GWGCWC	2 cut(s)	60, 237
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	375
AoxI	GGCC	3 cut(s)	76, 85, 97
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	497
AspLEI	GCGC	4 cut(s)	274, 281, 367, 376
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	103, 320
AvaI	CYCGRG	1 cut(s)	199
BauI	CACGAG	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	60, 237
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	2 cut(s)	100, 133
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 82, 116
BciVI	GTATCC	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	20
BglI	GCCNNNNNGGC	2 cut(s)	44, 84
BisI	GCNGC	6 cut(s)	33, 36, 39, 205, 292, 295
BlsI	GCNGC	6 cut(s)	34, 37, 40, 206, 293, 296
Bme1390I	CCNGG	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	4 cut(s)	22, 39, 73, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 106
Bse1I	ACTGG	2 cut(s)	185, 315
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	4 cut(s)	22, 39, 73, 228
BseLI	CCNNNNNNNGG	2 cut(s)	94, 106
BseNI	ACTGG	2 cut(s)	185, 315
BseRI	GAGGAG	3 cut(s)	50, 53, 113
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	4 cut(s)	41, 279, 367, 388
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	78, 87, 99
BshVI	ATCGAT	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	258
BsiHKAI	GWGCWC	2 cut(s)	60, 237
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	94, 106
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	78, 87, 99
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	60, 237
Bsp143I	GATC	5 cut(s)	48, 69, 255, 286, 301
Bsp68I	TCGCGA	1 cut(s)	388
BspANI	GGCC	3 cut(s)	78, 87, 99
BspDI	ATCGAT	1 cut(s)	258
BspFNI	CGCG	4 cut(s)	41, 279, 367, 388
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	185, 315
BssECI	CCNNGG	4 cut(s)	22, 39, 73, 228
BssMI	GATC	5 cut(s)	48, 69, 255, 286, 301
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	109, 132, 326
Bst6I	CTCTTC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstFNI	CGCG	4 cut(s)	41, 279, 367, 388
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	4 cut(s)	274, 281, 367, 376
BstKTI	GATC	5 cut(s)	51, 72, 258, 289, 304
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	5 cut(s)	48, 69, 255, 286, 301
BstMCI	CGRYCG	1 cut(s)	258
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	4 cut(s)	41, 279, 367, 388
BstV1I	GCAGC	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	78, 87, 99
BsuTUI	ATCGAT	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	39
BtuMI	TCGCGA	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	4 cut(s)	274, 281, 367, 376
Cfr13I	GGNCC	1 cut(s)	97
Cfr42I	CCGCGG	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	258
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	52, 169
CviJI	RGCY	8 cut(s)	78, 87, 99, 204, 268, 314, 425, 432
CviKI_1	RGCY	8 cut(s)	78, 87, 99, 204, 268, 314, 425, 432
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	5 cut(s)	50, 71, 257, 288, 303
DpnII	GATC	5 cut(s)	48, 69, 255, 286, 301
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	230
Eco47III	AGCGCT	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	199
Eco91I	GGTNACC	1 cut(s)	109
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	109
FaeI	CATG	2 cut(s)	55, 172
FaiI	YATR	5 cut(s)	53, 170, 484, 510, 520
FatI	CATG	2 cut(s)	51, 168
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	6 cut(s)	33, 36, 39, 205, 292, 295
Fsp4HI	GCNGC	6 cut(s)	33, 36, 39, 205, 292, 295
GlaI	GCGC	4 cut(s)	273, 280, 366, 375
GluI	GCNGC	6 cut(s)	33, 36, 39, 205, 292, 295
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	3 cut(s)	78, 87, 99
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	4 cut(s)	274, 281, 367, 376
Hin1II	CATG	2 cut(s)	55, 172
Hin6I	GCGC	4 cut(s)	272, 279, 365, 374
HinP1I	GCGC	4 cut(s)	272, 279, 365, 374
HinfI	GANTC	4 cut(s)	193, 215, 383, 394
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	103, 320
Hpy188I	TCNGA	3 cut(s)	26, 232, 489
Hpy188III	TCNNGA	3 cut(s)	67, 284, 387
Hpy99I	CGWCG	2 cut(s)	86, 372
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	3 cut(s)	109, 132, 326
HpyCH4V	TGCA	3 cut(s)	222, 409, 473
Hsp92II	CATG	2 cut(s)	55, 172
HspAI	GCGC	4 cut(s)	272, 279, 365, 374
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	5 cut(s)	48, 69, 255, 286, 301
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	3 cut(s)	63, 232, 319
LpnPI	CCDG	6 cut(s)	88, 166, 232, 282, 296, 375
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	1 cut(s)	355
MaeIII	GTNAC	3 cut(s)	103, 109, 326
MalI	GATC	5 cut(s)	50, 71, 257, 288, 303
MbiI	CCGCTC	1 cut(s)	400
MboI	GATC	5 cut(s)	48, 69, 255, 286, 301
MboII	GAAGA	3 cut(s)	275, 296, 392
MhlI	GDGCHC	2 cut(s)	60, 237
MluCI	AATT	2 cut(s)	468, 497
MlyI	GAGTC	2 cut(s)	187, 209
MseI	TTAA	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	4 cut(s)	41, 279, 367, 388
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	5 cut(s)	48, 69, 255, 286, 301
NlaIII	CATG	2 cut(s)	55, 172
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	3 cut(s)	103, 109, 326
NruI	TCGCGA	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	383, 394
PkrI	GCNGC	6 cut(s)	34, 37, 40, 206, 293, 296
Ple19I	CGATCG	1 cut(s)	258
PleI	GAGTC	2 cut(s)	187, 209
PpsI	GAGTC	2 cut(s)	187, 209
PspEI	GGTNACC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	97
PvuI	CGATCG	1 cut(s)	258
RruI	TCGCGA	1 cut(s)	388
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacII	CCGCGG	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	6 cut(s)	33, 36, 39, 205, 292, 295
Sau3AI	GATC	5 cut(s)	48, 69, 255, 286, 301
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	2 cut(s)	187, 209
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	60, 237
SetI	ASST	5 cut(s)	123, 206, 240, 337, 434
SfaNI	GCATC	1 cut(s)	355
SfiI	GGCCNNNNNGGCC	1 cut(s)	84
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
Sse9I	AATT	2 cut(s)	468, 497
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	109, 132, 326
TaqI	TCGA	7 cut(s)	81, 254, 258, 349, 370, 414, 447
TasI	AATT	2 cut(s)	468, 497
TauI	GCSGC	5 cut(s)	35, 38, 41, 294, 297
TfiI	GAWTC	2 cut(s)	383, 394
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TseFI	GTSAC	3 cut(s)	103, 109, 326
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	3 cut(s)	103, 109, 326
TspDTI	ATGAA	1 cut(s)	276
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.