Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Reverse (-)

31424491 .. 31426731

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTTTGGAGTGGGTTGTGCTAGGATACGCCGCGGCTGCAGAGGCCATCATGGTCCTGCTCCTGACGCTCCCGGGCCTCGACGGCCTCCGCAAGGGCCTCGTCGCCGTCACCCGCAATCTCCTGAAACCGTTTCTGTCGGTGGTGCCGTTTTGCCTCTTCTTGCTGATGGACATCTACTGGAAGTACGAGACTCGGCCGAGTTGCGAGGGCGACTCGTGCACTCCCTCTGAGCACCTCCGCCACCAGAAGTCGATCATGAAGAGCCAGCGCAATGCGCTCTTGATCGCGTCCGCCTTGATCTTCTACTGGCTTCTCTACACCGTCACCCACCTCGTCATCCGCATCGAGCATTTGAACCAGCGCGTCGAACGCTTGAAGAATCGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.94

Weight (kDa)

9.12

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccII	CGCG	4 cut(s)	35, 290, 366, 387
AciI	CCGC	7 cut(s)	33, 35, 91, 115, 241, 294, 343
AcoI	YGGCCR	1 cut(s)	197
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	358, 379
Alw21I	GWGCWC	2 cut(s)	224, 237
Alw26I	GTCTC	1 cut(s)	185
Alw44I	GTGCAC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	5 cut(s)	45, 76, 85, 97, 197
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	38
AspLEI	GCGC	3 cut(s)	273, 280, 366
AspS9I	GGNCC	3 cut(s)	55, 76, 97
AsuC2I	CCSGG	2 cut(s)	74, 75
AsuHPI	GGTGA	2 cut(s)	103, 319
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	224, 237
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	56, 163
BceAI	ACGGC	3 cut(s)	92, 100, 133
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciVI	GTATCC	1 cut(s)	20
BcnI	CCSGG	2 cut(s)	74, 75
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	20
BglI	GCCNNNNNGGC	1 cut(s)	84
BisI	GCNGC	3 cut(s)	33, 36, 39
BlsI	GCNGC	3 cut(s)	34, 37, 40
Bme1390I	CCNGG	2 cut(s)	74, 75
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	55, 76, 97
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	74, 75
BmsI	GCATC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpuMI	CCSGG	2 cut(s)	74, 75
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	33, 73
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	185, 314
Bse3DI	GCAATG	1 cut(s)	280
Bse8I	GATNNNNATC	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	33, 73
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	185, 314
BseSI	GKGCMC	1 cut(s)	224
BseX3I	CGGCCG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	4 cut(s)	35, 290, 366, 387
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	5 cut(s)	47, 78, 87, 99, 199
BshNI	GGYRCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	224, 237
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	5 cut(s)	47, 78, 87, 99, 199
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	224, 237
Bsp143I	GATC	3 cut(s)	255, 285, 300
Bsp68I	TCGCGA	1 cut(s)	387
BspACI	CCGC	7 cut(s)	33, 35, 91, 115, 241, 294, 343
BspANI	GGCC	5 cut(s)	47, 78, 87, 99, 199
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	4 cut(s)	35, 290, 366, 387
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	185, 314
BssECI	CCNNGG	2 cut(s)	33, 73
BssMI	GATC	3 cut(s)	255, 285, 300
BssSI	CACGAG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	132, 325
Bst6I	CTCTTC	2 cut(s)	164, 257
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	4 cut(s)	35, 290, 366, 387
BstHHI	GCGC	3 cut(s)	273, 280, 366
BstKTI	GATC	3 cut(s)	258, 288, 303
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	3 cut(s)	255, 285, 300
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 44, 67, 84, 219, 277, 372
BstSCI	CCNGG	2 cut(s)	72, 73
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	4 cut(s)	35, 290, 366, 387
BstV1I	GCAGC	1 cut(s)	25
BstZI	CGGCCG	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	5 cut(s)	47, 78, 87, 99, 199
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	339
BtuMI	TCGCGA	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	3 cut(s)	273, 280, 366
Cfr13I	GGNCC	3 cut(s)	55, 76, 97
Cfr42I	CCGCGG	1 cut(s)	36
Cfr9I	CCCGGG	1 cut(s)	73
CseI	GACGC	3 cut(s)	76, 279, 355
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	52, 259
CviJI	RGCY	9 cut(s)	5, 38, 47, 78, 87, 99, 199, 267, 313
CviKI_1	RGCY	9 cut(s)	5, 38, 47, 78, 87, 99, 199, 267, 313
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	3 cut(s)	257, 287, 302
DpnII	GATC	3 cut(s)	255, 285, 300
EaeI	YGGCCR	1 cut(s)	197
EagI	CGGCCG	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	164, 257
EarI	CTCTTC	2 cut(s)	164, 257
EciI	GGCGGA	2 cut(s)	230, 283
EclXI	CGGCCG	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	97
FaeI	CATG	2 cut(s)	55, 262
FaiI	YATR	2 cut(s)	53, 260
FatI	CATG	2 cut(s)	51, 258
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	3 cut(s)	33, 36, 39
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	3 cut(s)	33, 36, 39
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	3 cut(s)	272, 279, 365
GluI	GCNGC	3 cut(s)	33, 36, 39
HaeIII	GGCC	5 cut(s)	47, 78, 87, 99, 199
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	3 cut(s)	76, 279, 355
HhaI	GCGC	3 cut(s)	273, 280, 366
Hin1II	CATG	2 cut(s)	55, 262
Hin6I	GCGC	3 cut(s)	271, 278, 364
HinP1I	GCGC	3 cut(s)	271, 278, 364
HinfI	GANTC	3 cut(s)	193, 215, 382
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	103, 319
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	5 cut(s)	64, 124, 259, 283, 386
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	3 cut(s)	86, 107, 371
HpyCH4III	ACNGT	2 cut(s)	132, 325
HpyCH4V	TGCA	2 cut(s)	41, 222
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 44, 67, 84, 219, 277, 372
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	55, 262
HspAI	GCGC	3 cut(s)	271, 278, 364
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	255, 285, 300
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	66, 75
LpnPI	CCDG	9 cut(s)	71, 77, 87, 137, 166, 260, 281, 295, 374
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	109, 325
MalI	GATC	3 cut(s)	257, 287, 302
MboI	GATC	3 cut(s)	255, 285, 300
MboII	GAAGA	4 cut(s)	151, 274, 295, 391
MhlI	GDGCHC	2 cut(s)	224, 237
MlyI	GAGTC	2 cut(s)	187, 209
MnlI	CCTC	9 cut(s)	37, 89, 98, 110, 167, 202, 238, 248, 344
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	74, 75
MvnI	CGCG	4 cut(s)	35, 290, 366, 387
MwoI	GCNNNNNNNGC	7 cut(s)	38, 44, 67, 84, 219, 277, 372
NciI	CCSGG	2 cut(s)	74, 75
NdeII	GATC	3 cut(s)	255, 285, 300
NlaIII	CATG	2 cut(s)	55, 262
NlaIV	GGNNCC	1 cut(s)	147
NmeAIII	GCCGAG	2 cut(s)	175, 225
NmuCI	GTSAC	2 cut(s)	109, 325
NruI	TCGCGA	1 cut(s)	387
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	34, 37, 40
PleI	GAGTC	2 cut(s)	187, 209
PpsI	GAGTC	2 cut(s)	187, 209
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	55, 76, 97
PstI	CTGCAG	1 cut(s)	43
RruI	TCGCGA	1 cut(s)	387
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacII	CCGCGG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	3 cut(s)	33, 36, 39
Sau3AI	GATC	3 cut(s)	255, 285, 300
Sau96I	GGNCC	3 cut(s)	55, 76, 97
SchI	GAGTC	2 cut(s)	187, 209
ScrFI	CCNGG	2 cut(s)	74, 75
SduI	GDGCHC	2 cut(s)	224, 237
SetI	ASST	2 cut(s)	240, 336
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	39
SfiI	GGCCNNNNNGGCC	1 cut(s)	84
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	75
SsiI	CCGC	7 cut(s)	33, 35, 91, 115, 241, 294, 343
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	72, 73
TaaI	ACNGT	2 cut(s)	132, 325
TaqI	TCGA	4 cut(s)	81, 254, 348, 369
TauI	GCSGC	2 cut(s)	35, 38
TfiI	GAWTC	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	109, 325
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	2 cut(s)	109, 325
TspDTI	ATGAA	1 cut(s)	275
TspMI	CCCGGG	1 cut(s)	73
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	92
XmaI	CCCGGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.