Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007829.1

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Forward (+)

19598 .. 20234

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007829.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgttctcagaggatgatttattacttgatccgacaccgtttgagaatgatggtaagattctagtggcagaggagatcgataatctcatggcctttggtgatgagtccttgaattctgatacaaataacccatcaattgatgatgcccatcttgagaaggagaaggaggaggagaagtggatggtgctaggctacggcactggcgtagaggccatgttggtcctcctcctcacactcattggcctcgactgcctccccaagggcctcatggtcgtcacgcaaaacctcctcaagcccttcctctcggtggtgcccttctgcctcttccttctcatggacatctactggaagtacgagaatcagccgaactgcgacaacgactcttgcaagccgttcgacacctctgccaccagaagtccatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.84

Weight (kDa)

4.05

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	112
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	259, 307, 334
AgsI	TTSAA	1 cut(s)	112
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	4 cut(s)	90, 210, 241, 262
ApoI	RAATTY	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	220, 262
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	310
BccI	CCATC	4 cut(s)	44, 139, 156, 175
BceAI	ACGGC	2 cut(s)	211, 376
BcgI	CGANNNNNNTGC	4 cut(s)	376, 386, 410, 420
BfaI	CTAG	2 cut(s)	62, 188
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	220, 262
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	1 cut(s)	133
BpuEI	CTTGAG	2 cut(s)	173, 275
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 307, 334
Bse1I	ACTGG	2 cut(s)	205, 350
Bse8I	GATNNNNATC	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	19, 186
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	259, 307, 334
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	205, 350
BseRI	GAGGAG	6 cut(s)	86, 182, 185, 215, 218, 278
BseSI	GKGCMC	1 cut(s)	315
BshFI	GGCC	4 cut(s)	92, 212, 243, 264
BshNI	GGYRCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	259, 307, 334
BsnI	GGCC	4 cut(s)	92, 212, 243, 264
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	28, 75
BspANI	GGCC	4 cut(s)	92, 212, 243, 264
BspCNI	CTCAG	1 cut(s)	20
BspDI	ATCGAT	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	422
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	205, 350
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	28, 75
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	19, 186
BstKTI	GATC	2 cut(s)	31, 78
BstMBI	GATC	2 cut(s)	28, 75
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	315
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	4 cut(s)	92, 212, 243, 264
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	19, 186
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	422
Cfr13I	GGNCC	2 cut(s)	220, 262
ClaI	ATCGAT	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	5 cut(s)	88, 214, 268, 334, 423
CviJI	RGCY	8 cut(s)	92, 192, 212, 243, 264, 295, 364, 391
CviKI_1	RGCY	8 cut(s)	92, 192, 212, 243, 264, 295, 364, 391
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	7
DpnI	GATC	2 cut(s)	30, 77
DpnII	GATC	2 cut(s)	28, 75
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	5 cut(s)	91, 217, 271, 337, 426
FaiI	YATR	5 cut(s)	89, 215, 269, 335, 424
FatI	CATG	5 cut(s)	87, 213, 267, 333, 422
FokI	GGATG	2 cut(s)	26, 193
FspBI	CTAG	2 cut(s)	62, 188
HaeIII	GGCC	4 cut(s)	92, 212, 243, 264
Hin1II	CATG	5 cut(s)	91, 217, 271, 337, 426
HinfI	GANTC	4 cut(s)	58, 104, 358, 380
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	10, 33, 118
Hpy188III	TCNNGA	2 cut(s)	152, 423
HpyAV	CCTTC	5 cut(s)	151, 157, 307, 325, 338
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	1 cut(s)	7
Hsp92II	CATG	5 cut(s)	91, 217, 271, 337, 426
Kzo9I	GATC	2 cut(s)	28, 75
LpnPI	CCDG	2 cut(s)	186, 331
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	62, 188
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	30, 77
MboI	GATC	2 cut(s)	28, 75
MboII	GAAGA	1 cut(s)	316
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	112, 135
MlyI	GAGTC	2 cut(s)	113, 374
MmeI	TCCRAC	1 cut(s)	56
MunI	CAATTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	249
NdeII	GATC	2 cut(s)	28, 75
NlaIII	CATG	5 cut(s)	91, 217, 271, 337, 426
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	58, 358
PleI	GAGTC	2 cut(s)	112, 374
PpsI	GAGTC	2 cut(s)	112, 374
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	2 cut(s)	220, 262
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
Sau3AI	GATC	2 cut(s)	28, 75
Sau96I	GGNCC	2 cut(s)	220, 262
SchI	GAGTC	2 cut(s)	113, 374
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	2 cut(s)	288, 404
SfaNI	GCATC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	152, 290
SmoI	CTYRAG	2 cut(s)	152, 290
Sse9I	AATT	2 cut(s)	112, 135
SspMI	CTAG	2 cut(s)	62, 188
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	3 cut(s)	78, 246, 396
TasI	AATT	2 cut(s)	112, 135
TfiI	GAWTC	2 cut(s)	58, 358
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	220
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XspI	CTAG	2 cut(s)	62, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.