Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Reverse (-)

59742268 .. 59743158

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG440600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTCTAGAGTGGATGGTGCTAGGCTACGCCGCCGGCGCAGAGTCCGTGATGGTCCTCCTCCTCACGCTCATTGGACTCGACAGTCTCCACAAGGGCCTCATGGCCATCACGTGCAACCTCCTCAAGCCCTTCCTCTCAGTGGTGCCCTTTTGCCTCTTCCTCCTCATGGACATCTATTGGAAGTACAAGAATCGGCCGAACTGCGACAACGACTCTTGCACGCCGTTCGAGCACCTTCGCCACCAGAAGTCCGTCATGAAGAGCCAGTGCAACACGCTTCTCATAGACGGGCCACTAAGTCGAATCGACAAGCAAGAGATTTCAGAAGGGAACATGGATGTGACTCTTCCTGCCACAGTTGAAGGGGTGAGTCATGTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

5.72

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	1 cut(s)	33
AcoI	YGGCCR	2 cut(s)	105, 197
AcvI	CACGTG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	142, 169
AgsI	TTSAA	1 cut(s)	365
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	4 cut(s)	97, 105, 197, 293
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	55, 97, 293
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	145
BbrPI	CACGTG	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	237
BccI	CCATC	3 cut(s)	10, 46, 116
BceAI	ACGGC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	8, 23
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	55, 97, 293
BmiI	GGNNCC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 169
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	21, 346
BseLI	CCNNNNNNNGG	2 cut(s)	142, 169
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	4 cut(s)	50, 53, 113, 155
BseSI	GKGCMC	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	4 cut(s)	99, 107, 199, 295
BshNI	GGYRCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	142, 169
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	99, 107, 199, 295
Bsp1286I	GDGCHC	2 cut(s)	150, 237
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	4 cut(s)	99, 107, 199, 295
BspCNI	CTCAG	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	86, 361
Bst6I	CTCTTC	3 cut(s)	164, 257, 354
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	37, 224
BstDEI	CTNAG	2 cut(s)	139, 299
BstF5I	GGATG	2 cut(s)	21, 346
BstHHI	GCGC	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	92
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 232
BstSLI	GKGCMC	1 cut(s)	150
BstZI	CGGCCG	1 cut(s)	197
BsuRI	GGCC	4 cut(s)	99, 107, 199, 295
BtsCI	GGATG	2 cut(s)	21, 346
BtsIMutI	CAGTG	2 cut(s)	147, 275
Cac8I	GCNNGC	2 cut(s)	37, 224
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	55, 97, 293
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	5 cut(s)	103, 169, 259, 337, 377
CviJI	RGCY	8 cut(s)	5, 27, 99, 107, 130, 199, 267, 295
CviKI_1	RGCY	8 cut(s)	5, 27, 99, 107, 130, 199, 267, 295
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	139, 299
DrdI	GACNNNNNNGTC	1 cut(s)	84
DseDI	GACNNNNNNGTC	1 cut(s)	84
EaeI	YGGCCR	2 cut(s)	105, 197
EagI	CGGCCG	1 cut(s)	197
Eam1104I	CTCTTC	3 cut(s)	164, 257, 354
EarI	CTCTTC	3 cut(s)	164, 257, 354
EclXI	CGGCCG	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	197
Eco72I	CACGTG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	97
FaeI	CATG	5 cut(s)	106, 172, 262, 340, 380
FaiI	YATR	7 cut(s)	104, 170, 260, 287, 338, 378, 385
FatI	CATG	5 cut(s)	102, 168, 258, 336, 376
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	28, 353
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	8, 23
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	99, 107, 199, 295
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	5 cut(s)	106, 172, 262, 340, 380
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	7 cut(s)	44, 78, 193, 215, 306, 346, 373
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	8, 259
HpyAV	CCTTC	4 cut(s)	142, 248, 323, 359
HpyCH4III	ACNGT	2 cut(s)	86, 361
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	117, 222, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 232
HpyF3I	CTNAG	2 cut(s)	139, 299
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	5 cut(s)	106, 172, 262, 340, 380
HspAI	GCGC	1 cut(s)	39
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	257
LpnPI	CCDG	4 cut(s)	49, 260, 281, 366
MaeI	CTAG	2 cut(s)	8, 23
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	343
MboII	GAAGA	3 cut(s)	151, 274, 341
MhlI	GDGCHC	2 cut(s)	150, 237
MlsI	TGGCCA	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	5 cut(s)	53, 72, 209, 340, 382
Mox20I	TGGCCA	1 cut(s)	107
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	38, 232
NaeI	GCCGGC	1 cut(s)	37
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	5 cut(s)	106, 172, 262, 340, 380
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	343
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	257
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	193, 306
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	5 cut(s)	52, 72, 209, 340, 381
PmaCI	CACGTG	1 cut(s)	114
PmlI	CACGTG	1 cut(s)	114
PpsI	GAGTC	5 cut(s)	52, 72, 209, 340, 381
Ppu21I	YACGTR	1 cut(s)	114
PspCI	CACGTG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	55, 97, 293
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	1 cut(s)	33
Sau96I	GGNCC	3 cut(s)	55, 97, 293
SchI	GAGTC	5 cut(s)	53, 72, 209, 340, 382
SduI	GDGCHC	2 cut(s)	150, 237
SetI	ASST	3 cut(s)	116, 123, 240
SgrAI	CRCCGGYG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	2 cut(s)	8, 23
TaaI	ACNGT	2 cut(s)	86, 361
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	4 cut(s)	81, 231, 304, 309
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	193, 306
TscAI	CASTG	2 cut(s)	147, 275
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	2 cut(s)	37, 244
TspRI	CASTG	2 cut(s)	147, 275
VpaK11BI	GGWCC	1 cut(s)	55
XbaI	TCTAGA	1 cut(s)	7
XspI	CTAG	2 cut(s)	8, 23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.