RchiOBHm_Chr6g0253461

Erwinia induced protein 2

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
8568464 .. 8568652
189 bp
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UTR
Exon/CDS
Intron
PRQ22728

Sequence Viewer

Length: 189 bp
ATGGCTCTAGAGTGGGTGGTGCTAGGCTATGCCGTCGACGCAGAGGCCCTGATGGTCCTCCTCATCACGCTCCCCGGCCTCGAAGGCCTCCGCAAGGGCCTTATGGCCATCACGCGCAACCTCCTCAAGCCCTTCTTCTCGGTGGTGCCCTTCTGCCTCTTCCTCCTCATGGACATCTATTGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.04

Weight (kDa)

6.04

Isoelectric Point (pI)

25.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 36
AccII CGCG 1 cut(s) 115
AciI CCGC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 94, 169
AoxI GGCC 5 cut(s) 45, 76, 85, 97, 105
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 3 cut(s) 46, 55, 97
AsuC2I CCSGG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 107
BanI GGYRCC 1 cut(s) 145
BccI CCATC 2 cut(s) 46, 116
BceAI ACGGC 1 cut(s) 17
BcnI CCSGG 1 cut(s) 75
BfaI CTAG 2 cut(s) 8, 23
BglI GCCNNNNNGGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 3 cut(s) 46, 55, 97
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 169
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 94, 169
BseRI GAGGAG 3 cut(s) 50, 113, 155
BseSI GKGCMC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 5 cut(s) 47, 78, 87, 99, 107
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 94, 169
BsnI GGCC 5 cut(s) 47, 78, 87, 99, 107
Bsp1286I GDGCHC 1 cut(s) 150
BspACI CCGC 1 cut(s) 91
BspANI GGCC 5 cut(s) 47, 78, 87, 99, 107
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 164
BstENI CCTNNNNNAGG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 38, 84
BstSCI CCNGG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 150
BstUI CGCG 1 cut(s) 115
BsuRI GGCC 5 cut(s) 47, 78, 87, 99, 107
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 3 cut(s) 46, 55, 97
CseI GACGC 1 cut(s) 47
CviAII CATG 1 cut(s) 169
CviJI RGCY 8 cut(s) 5, 27, 47, 78, 87, 99, 107, 130
CviKI_1 RGCY 8 cut(s) 5, 27, 47, 78, 87, 99, 107, 130
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco147I AGGCCT 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoO109I RGGNCCY 2 cut(s) 46, 97
FaeI CATG 1 cut(s) 172
FaiI YATR 3 cut(s) 30, 104, 170
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 1 cut(s) 168
FblI GTMKAC 1 cut(s) 36
FspBI CTAG 2 cut(s) 8, 23
GlaI GCGC 1 cut(s) 116
HaeIII GGCC 5 cut(s) 47, 78, 87, 99, 107
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 2 cut(s) 38, 41
HpyAV CCTTC 3 cut(s) 77, 142, 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 84
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 2 cut(s) 62, 88
MaeI CTAG 2 cut(s) 8, 23
MboII GAAGA 2 cut(s) 127, 151
MhlI GDGCHC 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 107
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 38, 84
NciI CCSGG 1 cut(s) 75
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 3 cut(s) 46, 55, 97
SalI GTCGAC 1 cut(s) 35
Sau96I GGNCC 3 cut(s) 46, 55, 97
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 150
SetI ASST 1 cut(s) 123
SfiI GGCCNNNNNGGCC 1 cut(s) 84
SgrDI CGTCGACG 1 cut(s) 35
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 1 cut(s) 91
SspMI CTAG 2 cut(s) 8, 23
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 73
TaqI TCGA 2 cut(s) 36, 81
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 2 cut(s) 8, 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.