Rh4BG426800

Erwinia induced protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005096
Physical Location & Seq
Forward (+)
57084026 .. 57084773
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG426800.1

Sequence Viewer

Length: 222 bp
ATGGCTCTAGAGTGGGTGGTGCTAGGCTACGCCGCCGGCGCAGAGGCCGTGATGGTCCTCCTCTTCATGCTCGACGGCCTCTGCAAGGGCCTCGTGGCCGTCACGCGCAATCTCCTCAAGCCGTTCCTCTCGGTGGTGCCCTTCTGCCTCTTCCTCCTTGTTGCTGAGATAATCTTTCCATGGCTTCTTGAAGAGGAGATACCGAAGAAAAGAGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.23

Weight (kDa)

5.26

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AccII CGCG 1 cut(s) 106
AciI CCGC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 85, 133
AgsI TTSAA 1 cut(s) 191
AoxI GGCC 4 cut(s) 45, 76, 88, 96
AspLEI GCGC 2 cut(s) 41, 108
AspS9I GGNCC 2 cut(s) 55, 88
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BauI CACGAG 1 cut(s) 92
BccI CCATC 1 cut(s) 46
BceAI ACGGC 4 cut(s) 32, 83, 91, 106
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BfaI CTAG 2 cut(s) 8, 23
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 55, 88
BmiI GGNNCC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 133
Bse118I RCCGGY 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 179
BseLI CCNNNNNNNGG 2 cut(s) 85, 133
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 3 cut(s) 50, 104, 209
BseSI GKGCMC 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 4 cut(s) 47, 78, 90, 98
BshNI GGYRCC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 85, 133
BsnI GGCC 4 cut(s) 47, 78, 90, 98
Bsp1286I GDGCHC 1 cut(s) 141
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 1 cut(s) 33
BspANI GGCC 4 cut(s) 47, 78, 90, 98
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 179
BssSI CACGAG 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 92
Bst6I CTCTTC 3 cut(s) 68, 155, 186
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 179
BstENI CCTNNNNNAGG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 2 cut(s) 41, 108
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 1 cut(s) 106
BsuRI GGCC 4 cut(s) 47, 78, 90, 98
BtgI CCRYGG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 2 cut(s) 41, 108
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 55, 88
CviAII CATG 2 cut(s) 67, 180
CviJI RGCY 8 cut(s) 5, 27, 47, 78, 90, 98, 121, 184
CviKI_1 RGCY 8 cut(s) 5, 27, 47, 78, 90, 98, 121, 184
DdeI CTNAG 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 3 cut(s) 68, 155, 186
EarI CTCTTC 3 cut(s) 68, 155, 186
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 70, 183
FaiI YATR 2 cut(s) 68, 181
FatI CATG 2 cut(s) 66, 179
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 8, 23
GlaI GCGC 2 cut(s) 40, 107
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 4 cut(s) 47, 78, 90, 98
HapII CCGG 1 cut(s) 36
HhaI GCGC 2 cut(s) 41, 108
Hin1II CATG 2 cut(s) 70, 183
Hin6I GCGC 2 cut(s) 39, 106
HinP1I GCGC 2 cut(s) 39, 106
HpaII CCGG 1 cut(s) 36
Hpy188III TCNNGA 2 cut(s) 8, 188
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 2 cut(s) 70, 183
HspAI GCGC 2 cut(s) 39, 106
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
LpnPI CCDG 1 cut(s) 49
MaeI CTAG 2 cut(s) 8, 23
MaeIII GTNAC 1 cut(s) 100
MboII GAAGA 4 cut(s) 55, 142, 203, 217
MhlI GDGCHC 1 cut(s) 141
MreI CGCCGGCG 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 35
MspI CCGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 38
NaeI GCCGGC 1 cut(s) 37
NcoI CCATGG 1 cut(s) 179
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 70, 183
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 2 cut(s) 55, 88
SatI GCNGC 1 cut(s) 33
Sau96I GGNCC 2 cut(s) 55, 88
SduI GDGCHC 1 cut(s) 141
SgrAI CRCCGGYG 1 cut(s) 35
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 1 cut(s) 33
SspMI CTAG 2 cut(s) 8, 23
StyI CCWWGG 1 cut(s) 179
TaqI TCGA 1 cut(s) 72
TauI GCSGC 1 cut(s) 35
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 7
XspI CTAG 2 cut(s) 8, 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.