Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005096

Physical Location & Seq

Genomic Coordinates Forward (+)

31884820 .. 31885975

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCTCTAGAGTGGGTGGTGCTAGGCTACGCCGCCGGCGCAGAGGCCGTGATGGTCCTCCTCCTCACGCTCCCCGGCCTCGACGGCCTCCGCAAGGGCCTCGTGGCCGTCACGCGCAACCTCCTGAAGCCGTTCCTCTCGGTGGTGCCGTTCTGCCTCTTCCTCCTCATGGACATCTACTGGAAGTACGAGAACCGGCCGAACTGCGACGGCGACTCCTGCACGCCGTCGGAGCACCTCCGCCACCAGAAGTCCATCATGAAGAGCCAGCGCAACGCGCTTCTCATCGCCGCCGCGCTCATCTTCTACTGGCTGCTCTACACCGTCACTCACCTTGTGGTCCGGATCGAGCAGCTCAACCAGCGCGTGGAGCGATTGAAGAAGAACCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.0

Weight (kDa)

9.1

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03160 AT5G17190
fragaria_vesca	FvH4_4g33810
malus_domestica	MD11G1246100.v1.1 MD13G1029700.v1.1 MD16G1020500.v1.1 MD16G1237600.v1.1
prunus_persica	Prupe.1G331700_v2.0.a1
pyrus_communis	pycom13g01810 pycom16g01840
rosa_chinensis	RchiOBHm_Chr4g0443321 RchiOBHm_Chr6g0253461
rosa_multiflora	Rmu_sc0007829.1_g000004 Rmu_ssc0000122.1_g000007
rosa_roxburghii	Rroxscaffold_5G00383900
rosa_rugosa	Rorug04G0345500
rosa_samantha	Rh2AG453500 Rh2AG508000 Rh2CG440600 Rh2CG493300 Rh4BG412100 Rh4BG426800 Rh4CG427500 Rh4DG033000 Rh4DG066100 Rh4DG407500 Rh7AG069700
rosa_wichuraiana	Rw0G022010 Rw2G037020 Rw4G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccII	CGCG	4 cut(s)	115, 278, 296, 366
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	5 cut(s)	33, 91, 241, 291, 294
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	2 cut(s)	105, 197
AcuI	CTGAAG	1 cut(s)	146
AdeI	CACNNNGTG	1 cut(s)	337
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	94, 142, 169, 367
AgsI	TTSAA	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	6 cut(s)	45, 76, 85, 97, 105, 197
ApeKI	GCWGC	2 cut(s)	313, 352
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	6 cut(s)	41, 117, 273, 280, 298, 366
AspS9I	GGNCC	3 cut(s)	55, 97, 340
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	55, 340
BanI	GGYRCC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	300, 364
BccI	CCATC	2 cut(s)	46, 263
BceAI	ACGGC	7 cut(s)	32, 92, 100, 115, 133, 211, 226
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	389
BcnI	CCSGG	1 cut(s)	75
BfaI	CTAG	2 cut(s)	8, 23
BglI	GCCNNNNNGGC	1 cut(s)	84
BisI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
BlsI	GCNGC	5 cut(s)	34, 292, 295, 315, 354
Bme1390I	CCNGG	2 cut(s)	75, 389
Bme18I	GGWCC	2 cut(s)	55, 340
BmgT120I	GGNCC	3 cut(s)	55, 97, 340
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	75, 389
BpuMI	CCSGG	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 142, 169, 367
Bse118I	RCCGGY	2 cut(s)	35, 195
Bse1I	ACTGG	2 cut(s)	185, 314
BseAI	TCCGGA	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	73
BseLI	CCNNNNNNNGG	4 cut(s)	94, 142, 169, 367
BseNI	ACTGG	2 cut(s)	185, 314
BseRI	GAGGAG	3 cut(s)	50, 53, 155
BseX3I	CGGCCG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	300, 364
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	4 cut(s)	115, 278, 296, 366
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
BshNI	GGYRCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	4 cut(s)	36, 75, 196, 343
BslI	CCNNNNNNNGG	4 cut(s)	94, 142, 169, 367
BsnI	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	5 cut(s)	33, 91, 241, 291, 294
BspANI	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	4 cut(s)	115, 278, 296, 366
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	145
BsrFI	RCCGGY	2 cut(s)	35, 195
BsrI	ACTGG	2 cut(s)	185, 314
BssAI	RCCGGY	2 cut(s)	35, 195
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	2 cut(s)	164, 257
BstC8I	GCNNGC	3 cut(s)	37, 224, 269
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstFNI	CGCG	4 cut(s)	115, 278, 296, 366
BstHHI	GCGC	6 cut(s)	41, 117, 273, 280, 298, 366
BstKTI	GATC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	345
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 84, 219, 232, 277, 361, 370
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	73, 387
BstUI	CGCG	4 cut(s)	115, 278, 296, 366
BstV1I	GCAGC	2 cut(s)	300, 364
BstZI	CGGCCG	1 cut(s)	197
BsuRI	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
BtgZI	GCGATG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	37, 224, 269
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	6 cut(s)	41, 117, 273, 280, 298, 366
Cfr10I	RCCGGY	2 cut(s)	35, 195
Cfr13I	GGNCC	3 cut(s)	55, 97, 340
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	169, 259
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
DraIII	CACNNNGTG	1 cut(s)	337
EaeI	YGGCCR	2 cut(s)	105, 197
EagI	CGGCCG	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	164, 257
EarI	CTCTTC	2 cut(s)	164, 257
EciI	GGCGGA	1 cut(s)	230
EclXI	CGGCCG	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	55, 340
Eco52I	CGGCCG	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	387
FaeI	CATG	2 cut(s)	172, 262
FaiI	YATR	2 cut(s)	170, 260
FatI	CATG	2 cut(s)	168, 258
Fnu4HI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
Fsp4HI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
FspBI	CTAG	2 cut(s)	8, 23
GlaI	GCGC	6 cut(s)	40, 116, 272, 279, 297, 365
GluI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
HaeIII	GGCC	6 cut(s)	47, 78, 87, 99, 107, 199
HapII	CCGG	4 cut(s)	36, 75, 196, 343
HhaI	GCGC	6 cut(s)	41, 117, 273, 280, 298, 366
Hin1II	CATG	2 cut(s)	172, 262
Hin6I	GCGC	6 cut(s)	39, 115, 271, 278, 296, 364
HinP1I	GCGC	6 cut(s)	39, 115, 271, 278, 296, 364
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	4 cut(s)	36, 75, 196, 343
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	8, 124, 259, 343
Hpy99I	CGWCG	3 cut(s)	86, 212, 232
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 84, 219, 232, 277, 361, 370
Hsp92II	CATG	2 cut(s)	172, 262
HspAI	GCGC	6 cut(s)	39, 115, 271, 278, 296, 364
Kpn2I	TCCGGA	1 cut(s)	342
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	345
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	3 cut(s)	75, 232, 370
Lsp1109I	GCAGC	2 cut(s)	300, 364
MaeI	CTAG	2 cut(s)	8, 23
MaeIII	GTNAC	2 cut(s)	109, 325
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	5 cut(s)	151, 274, 295, 391, 394
MhlI	GDGCHC	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	210
MreI	CGCCGGCG	1 cut(s)	35
MroI	TCCGGA	1 cut(s)	342
MroNI	GCCGGC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	131
MspI	CCGG	4 cut(s)	36, 75, 196, 343
MspR9I	CCNGG	2 cut(s)	75, 389
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	4 cut(s)	115, 278, 296, 366
MwoI	GCNNNNNNNGC	7 cut(s)	38, 84, 219, 232, 277, 361, 370
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	345
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	172, 262
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	2 cut(s)	109, 325
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	5 cut(s)	34, 292, 295, 315, 354
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	55, 97, 340
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	5 cut(s)	33, 291, 294, 314, 353
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	3 cut(s)	55, 97, 340
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	75, 389
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	4 cut(s)	123, 240, 336, 357
SfiI	GGCCNNNNNGGCC	1 cut(s)	84
SgrAI	CRCCGGYG	1 cut(s)	35
SinI	GGWCC	2 cut(s)	55, 340
SsiI	CCGC	5 cut(s)	33, 91, 241, 291, 294
SspMI	CTAG	2 cut(s)	8, 23
StyD4I	CCNGG	2 cut(s)	73, 387
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	81, 348
TauI	GCSGC	3 cut(s)	35, 293, 296
TseFI	GTSAC	2 cut(s)	109, 325
TseI	GCWGC	2 cut(s)	313, 352
Tsp45I	GTSAC	2 cut(s)	109, 325
TspDTI	ATGAA	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	2 cut(s)	55, 340
XagI	CCTNNNNNAGG	1 cut(s)	92
XbaI	TCTAGA	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	2 cut(s)	8, 23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.