Rh4DG066100

Erwinia induced protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0005096
Physical Location & Seq
Reverse (-)
9910534 .. 9916263
5730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG066100.1

Sequence Viewer

Length: 495 bp
ATGAAATCAAGCCGTGTAACCAAATTTGAGAGAGTGGGTTTGTTTCTTTTCGGCTTGCCATCTTCCGGGATTTGGATTTGTATGATCAATCGATTTCTTCTTTCTTTTTACAATCGTATAACCTGGATTGAGACGGAATTCACTATTATCAGTTCTGGGCATATAGAAGAATCCATCAATCTTGCTGCAAATGGAAGCAAACCACGAGGTCCCATCAAGTTCTATGCTTTTAACCTTAATCATGTGAAGAAAGAGCAGCAAAACGGAAAGAGTTCTTTAAGAGGCTGGAAGAAAAGAAAAGGGGAGAGGCATAAAATCCCAATGGCTCTAGAGTGGGTGGTGCTAGGCTACGCCGCCGGCGCAGAGGCCGTGATGGTCCTCCTCTTCATGCTCGACGGCCTCTGCAAGGGCCTCGTGGTCGTCACGCGCAATCTCCTCAAGCCGTTCCTCAAAAGGTGGTGCCCTTCTGCCTCTTCCTCCTTGTTGCTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.63

Weight (kDa)

10.26

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 459
AccII CGCG 1 cut(s) 427
AciI CCGC 1 cut(s) 354
AcsI RAATTY 2 cut(s) 23, 137
AfiI CCNNNNNNNGG 3 cut(s) 65, 72, 406
AjnI CCWGG 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 3 cut(s) 366, 397, 409
ApeKI GCWGC 2 cut(s) 185, 256
ApoI RAATTY 2 cut(s) 23, 137
Asp700I GAANNNNTTC 1 cut(s) 271
AspLEI GCGC 2 cut(s) 362, 429
AspS9I GGNCC 3 cut(s) 209, 376, 409
AsuC2I CCSGG 1 cut(s) 67
AvaII GGWCC 2 cut(s) 209, 376
BaeGI GKGCMC 1 cut(s) 464
BanI GGYRCC 1 cut(s) 459
BauI CACGAG 2 cut(s) 204, 413
BbvI GCAGC 2 cut(s) 172, 268
BccI CCATC 4 cut(s) 67, 182, 221, 367
BceAI ACGGC 3 cut(s) 353, 412, 427
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 1 cut(s) 124
BclI TGATCA 1 cut(s) 84
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 2 cut(s) 329, 344
BisI GCNGC 3 cut(s) 186, 257, 354
BlsI GCNGC 3 cut(s) 187, 258, 355
Bme1390I CCNGG 2 cut(s) 67, 124
Bme18I GGWCC 2 cut(s) 209, 376
BmgT120I GGNCC 3 cut(s) 209, 376, 409
BmiI GGNNCC 2 cut(s) 211, 461
BmrFI CCNGG 2 cut(s) 67, 124
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 67
Bsa29I ATCGAT 1 cut(s) 91
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 72, 406
Bse118I RCCGGY 1 cut(s) 356
BseBI CCWGG 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 65, 72, 406
BseRI GAGGAG 2 cut(s) 371, 425
BseSI GKGCMC 1 cut(s) 464
BseXI GCAGC 2 cut(s) 172, 268
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 3 cut(s) 368, 399, 411
BshNI GGYRCC 1 cut(s) 459
BshVI ATCGAT 1 cut(s) 91
BsiSI CCGG 2 cut(s) 66, 357
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 3 cut(s) 65, 72, 406
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 3 cut(s) 368, 399, 411
Bsp1286I GDGCHC 1 cut(s) 464
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 354
BspANI GGCC 3 cut(s) 368, 399, 411
BspDI ATCGAT 1 cut(s) 91
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 211, 461
BspT107I GGYRCC 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 356
BssMI GATC 1 cut(s) 84
BssSI CACGAG 2 cut(s) 204, 413
Bst2BI CACGAG 2 cut(s) 204, 413
Bst2UI CCWGG 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 389, 478
BstC8I GCNNGC 2 cut(s) 56, 358
BstDEI CTNAG 1 cut(s) 488
BstENI CCTNNNNNAGG 1 cut(s) 404
BstFNI CGCG 1 cut(s) 427
BstHHI GCGC 2 cut(s) 362, 429
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 65, 122
BstSLI GKGCMC 1 cut(s) 464
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 172, 268
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 3 cut(s) 368, 399, 411
BsuTUI ATCGAT 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 56, 358
CfoI GCGC 2 cut(s) 362, 429
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 209, 376, 409
ClaI ATCGAT 1 cut(s) 91
CviAII CATG 2 cut(s) 242, 388
CviJI RGCY 9 cut(s) 12, 54, 285, 326, 348, 368, 399, 411, 442
CviKI_1 RGCY 9 cut(s) 12, 54, 285, 326, 348, 368, 399, 411, 442
DdeI CTNAG 1 cut(s) 488
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 389, 478
EarI CTCTTC 2 cut(s) 389, 478
Eco47I GGWCC 2 cut(s) 209, 376
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoO109I RGGNCCY 2 cut(s) 209, 409
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 2 cut(s) 245, 391
FaiI YATR 8 cut(s) 83, 119, 162, 164, 225, 243, 312, 389
FaqI GGGAC 1 cut(s) 195
FatI CATG 2 cut(s) 241, 387
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 186, 257, 354
Fsp4HI GCNGC 3 cut(s) 186, 257, 354
FspBI CTAG 2 cut(s) 329, 344
GlaI GCGC 2 cut(s) 361, 428
GluI GCNGC 3 cut(s) 186, 257, 354
HaeIII GGCC 3 cut(s) 368, 399, 411
HapII CCGG 2 cut(s) 66, 357
HhaI GCGC 2 cut(s) 362, 429
Hin1II CATG 2 cut(s) 245, 391
Hin6I GCGC 2 cut(s) 360, 427
HinP1I GCGC 2 cut(s) 360, 427
HinfI GANTC 1 cut(s) 170
HpaII CCGG 2 cut(s) 66, 357
Hpy188III TCNNGA 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 1 cut(s) 474
HpyCH4V TGCA 2 cut(s) 188, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 488
Hsp92II CATG 2 cut(s) 245, 391
HspAI GCGC 2 cut(s) 360, 427
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 1 cut(s) 84
LpnPI CCDG 6 cut(s) 79, 109, 136, 141, 271, 370
Lsp1109I GCAGC 2 cut(s) 172, 268
MaeI CTAG 2 cut(s) 329, 344
MaeIII GTNAC 2 cut(s) 16, 421
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 7 cut(s) 54, 89, 179, 259, 301, 376, 465
MhlI GDGCHC 1 cut(s) 464
MluCI AATT 2 cut(s) 23, 137
MreI CGCCGGCG 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 271
MseI TTAA 3 cut(s) 231, 237, 278
MspI CCGG 2 cut(s) 66, 357
MspR9I CCNGG 2 cut(s) 67, 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 359
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 1 cut(s) 67
NdeII GATC 1 cut(s) 84
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 245, 391
NlaIV GGNNCC 2 cut(s) 211, 461
NmuCI GTSAC 1 cut(s) 421
PdiI GCCGGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 65
PkrI GCNGC 3 cut(s) 187, 258, 355
PpuMI RGGWCCY 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 211, 461
PspPI GGNCC 3 cut(s) 209, 376, 409
PspPPI RGGWCCY 1 cut(s) 209
SaqAI TTAA 3 cut(s) 231, 237, 278
SatI GCNGC 3 cut(s) 186, 257, 354
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 3 cut(s) 209, 376, 409
ScrFI CCNGG 2 cut(s) 67, 124
SduI GDGCHC 1 cut(s) 464
SetI ASST 4 cut(s) 125, 211, 237, 458
SgrAI CRCCGGYG 1 cut(s) 356
SinI GGWCC 2 cut(s) 209, 376
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 2 cut(s) 23, 137
SsiI CCGC 1 cut(s) 354
SspMI CTAG 2 cut(s) 329, 344
StyD4I CCNGG 2 cut(s) 65, 122
TaqI TCGA 2 cut(s) 91, 393
TasI AATT 2 cut(s) 23, 137
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 3 cut(s) 231, 237, 278
Tru9I TTAA 3 cut(s) 231, 237, 278
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 2 cut(s) 185, 256
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 2 cut(s) 17, 376
TspGWI ACGGA 2 cut(s) 149, 279
VpaK11BI GGWCC 2 cut(s) 209, 376
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 2 cut(s) 23, 137
XbaI TCTAGA 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 271
XspI CTAG 2 cut(s) 329, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.