AT5G17510

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007881
Physical Location & Seq
Reverse (-)
5769318 .. 5772481
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17510.1

Sequence Viewer

Length: 1110 bp
ATGGAGGACACGAAGCCACCATTGGGAGGTAACAACAATCCTCAGCAGCAGCAGCAACAACAACAACTTCTCTATCAACACCAACTACAACAACAACAGAGACAACAACAAATGCTTCTATTGCAGCAATTGCAAAAACAACAACAGCAACAAGCAGCAATGTCTAGATTCCCGTCGAACATCGACGTGCATCTCCGGCCACCGGGGTTGATTCAGAACCGACCCATTAATCCTCCGCCTCAGCAGAATCCTACCCCTAACCCTAATTTGGGACAGCAGACACCGAATTTTCAACAGCAGCAGCAGCAGAATGTATCGAGTCAGCAGATGATGCAGCAACAACAACAACAGCAGCAGCAGCAGAAATTGATGAGGCCATTGAATCACATCGAGCTTCAATGCGCTTATCAGGACGCTTGGCGTGTTTGTCACCCCAATTTTAAACAACCCTTCTCTTCTCTCGAAGATGCTTGCGAGAGATTATTACCTTATCATGTCGTAGCAGATTACGAAGCAGAAGAGGATGATAGAATCCTTGATTCAGACCCAACAGGCCAGGCCTTGTCCCGCTCTCAACAATGGGATAACAACATTGCTGCGAAAGTTGCTGAATTCACGGCAACGTTTGAGAAGCAAGCACTAGCTTTTAACATAATAACTCGAAAGAGAGCTATGGGAGAATTCAGATCTGAGGAAAGGTTGATGGTAGAACAAGCTTTGCTACAAGATGAAAGGAAAGCGTTGATTGAACTGAAAGCAGAAATGGATAGGGAGAAGGCTGGCCGGGAGGCTCAGGAGGCTAAGCTGCGGATGGCGGCTTTAGCTCAAGCTGGACAGTCTCAATCTCATGCTGAGATAATGGCTCGTAACCCATTAAGGGCTAATGCGGTTGGAAATCAGGGCAGCAATATTCAGCTTAGCCACGAGATGGGAGAACAGGGACGTAACATGAACCCTGATGAGATGATGAATGGATGGGGAAACAACAGTCAGAGAGAGGACAAGGAACCTTCAGAAGATTTCTTGAATGATGAGGAGAATGAGAATGGAGAGACAGGGGAACAAGAAAACTGGCGTGAAGCAGGAGAATTTGATTTGAATAGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

369

Amino Acids

42.55

Weight (kDa)

4.98

Isoelectric Point (pI)

71.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 138 - 252 3.3e-28 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 928
AccBSI CCGCTC 1 cut(s) 570
AciI CCGC 5 cut(s) 236, 568, 808, 815, 887
AclI AACGTT 1 cut(s) 623
AcoI YGGCCR 2 cut(s) 197, 781
AcsI RAATTY 4 cut(s) 286, 611, 680, 1088
AcuI CTGAAG 1 cut(s) 996
AfiI CCNNNNNNNGG 7 cut(s) 23, 26, 202, 268, 269, 877, 928
AgsI TTSAA 6 cut(s) 293, 382, 398, 749, 1027, 1099
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 555
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 8 cut(s) 394, 644, 671, 716, 805, 824, 830, 916
AluI AGCT 8 cut(s) 394, 644, 671, 716, 805, 824, 830, 916
Alw26I GTCTC 3 cut(s) 94, 843, 1046
AoxI GGCC 5 cut(s) 197, 374, 553, 558, 781
ApoI RAATTY 4 cut(s) 286, 611, 680, 1088
AseI ATTAAT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 404
AsuC2I CCSGG 2 cut(s) 204, 785
AsuHPI GGTGA 1 cut(s) 422
BauI CACGAG 1 cut(s) 923
BbvCI CCTCAGC 2 cut(s) 42, 240
BccI CCATC 4 cut(s) 697, 805, 922, 969
BceAI ACGGC 1 cut(s) 633
BciT130I CCWGG 1 cut(s) 557
BcnI CCSGG 2 cut(s) 204, 785
BcoDI GTCTC 3 cut(s) 94, 843, 1046
BfaI CTAG 2 cut(s) 165, 641
BglII AGATCT 1 cut(s) 686
BlpI GCTNAGC 2 cut(s) 801, 917
Bme1390I CCNGG 3 cut(s) 204, 557, 785
BmgBI CACGTC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 1008
BmrFI CCNGG 3 cut(s) 204, 557, 785
BmsI GCATC 3 cut(s) 199, 321, 457
Bpu10I CCTNAGC 3 cut(s) 42, 240, 792
Bpu1102I GCTNAGC 2 cut(s) 801, 917
BpuEI CTTGAG 1 cut(s) 810
BpuMI CCSGG 2 cut(s) 204, 785
BsaJI CCNNGG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 7 cut(s) 23, 26, 202, 268, 269, 877, 928
Bse118I RCCGGY 1 cut(s) 1104
Bse1I ACTGG 1 cut(s) 1076
Bse3DI GCAATG 2 cut(s) 165, 591
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 3 cut(s) 529, 816, 980
BseLI CCNNNNNNNGG 7 cut(s) 23, 26, 202, 268, 269, 877, 928
BseMI GCAATG 2 cut(s) 165, 591
BseMII CTCAG 5 cut(s) 56, 254, 681, 806, 843
BseNI ACTGG 1 cut(s) 1076
BseRI GAGGAG 1 cut(s) 1049
BshFI GGCC 5 cut(s) 199, 376, 555, 560, 783
BsiSI CCGG 4 cut(s) 196, 203, 784, 1105
BslFI GGGAC 3 cut(s) 285, 550, 954
BslI CCNNNNNNNGG 7 cut(s) 23, 26, 202, 268, 269, 877, 928
BsmAI GTCTC 3 cut(s) 94, 843, 1046
BsmFI GGGAC 3 cut(s) 285, 550, 954
BsnI GGCC 5 cut(s) 199, 376, 555, 560, 783
Bsp143I GATC 1 cut(s) 686
Bsp1720I GCTNAGC 2 cut(s) 801, 917
BspACI CCGC 5 cut(s) 236, 568, 808, 815, 887
BspANI GGCC 5 cut(s) 199, 376, 555, 560, 783
BspCNI CTCAG 5 cut(s) 55, 253, 682, 805, 844
BspLI GGNNCC 1 cut(s) 1008
BsrBI CCGCTC 1 cut(s) 570
BsrDI GCAATG 2 cut(s) 165, 591
BsrFI RCCGGY 1 cut(s) 1104
BsrI ACTGG 1 cut(s) 1076
BssAI RCCGGY 1 cut(s) 1104
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 1 cut(s) 686
BssSI CACGAG 1 cut(s) 923
Bst2BI CACGAG 1 cut(s) 923
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 2 cut(s) 837, 989
Bst6I CTCTTC 2 cut(s) 460, 513
BstAPI GCANNNNNTGC 2 cut(s) 130, 331
BstC8I GCNNGC 3 cut(s) 472, 636, 781
BstDEI CTNAG 7 cut(s) 42, 240, 690, 792, 801, 852, 917
BstF5I GGATG 3 cut(s) 529, 816, 980
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 1 cut(s) 689
BstMAI GTCTC 3 cut(s) 94, 843, 1046
BstMBI GATC 1 cut(s) 686
BstNI CCWGG 1 cut(s) 557
BstSCI CCNGG 3 cut(s) 202, 555, 783
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
BsuRI GGCC 5 cut(s) 199, 376, 555, 560, 783
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 3 cut(s) 529, 816, 980
Cac8I GCNNGC 3 cut(s) 472, 636, 781
CfoI GCGC 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 1104
CseI GACGC 1 cut(s) 422
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 3 cut(s) 494, 848, 949
DdeI CTNAG 7 cut(s) 42, 240, 690, 792, 801, 852, 917
DpnI GATC 1 cut(s) 688
DpnII GATC 1 cut(s) 686
DraI TTTAAA 1 cut(s) 442
EaeI YGGCCR 2 cut(s) 197, 781
Eam1104I CTCTTC 2 cut(s) 460, 513
EarI CTCTTC 2 cut(s) 460, 513
EciI GGCGGA 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 996
EcoRI GAATTC 2 cut(s) 611, 680
EcoRII CCWGG 1 cut(s) 555
FaeI CATG 3 cut(s) 497, 851, 952
FaiI YATR 5 cut(s) 495, 653, 674, 849, 950
FaqI GGGAC 3 cut(s) 285, 550, 954
FatI CATG 3 cut(s) 493, 847, 948
FauI CCCGC 1 cut(s) 575
FokI GGATG 3 cut(s) 536, 823, 987
FspBI CTAG 2 cut(s) 165, 641
GlaI GCGC 1 cut(s) 403
HaeIII GGCC 5 cut(s) 199, 376, 555, 560, 783
HapII CCGG 4 cut(s) 196, 203, 784, 1105
HgaI GACGC 1 cut(s) 422
HhaI GCGC 1 cut(s) 404
Hin1II CATG 3 cut(s) 497, 851, 952
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 7 cut(s) 168, 211, 247, 319, 382, 531, 539
HpaII CCGG 4 cut(s) 196, 203, 784, 1105
HphI GGTGA 1 cut(s) 422
Hpy188I TCNGA 6 cut(s) 216, 544, 686, 691, 993, 1015
Hpy188III TCNNGA 5 cut(s) 165, 410, 461, 794, 1024
Hpy99I CGWCG 2 cut(s) 178, 188
HpyAV CCTTC 3 cut(s) 460, 769, 1020
HpyCH4III ACNGT 2 cut(s) 837, 989
HpyCH4IV ACGT 3 cut(s) 186, 623, 943
HpyCH4V TGCA 4 cut(s) 124, 133, 190, 334
HpyF3I CTNAG 7 cut(s) 42, 240, 690, 792, 801, 852, 917
HpySE526I ACGT 3 cut(s) 186, 623, 943
Hsp92II CATG 3 cut(s) 497, 851, 952
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 1 cut(s) 686
LweI GCATC 3 cut(s) 199, 321, 457
MaeI CTAG 2 cut(s) 165, 641
MaeII ACGT 3 cut(s) 186, 623, 943
MaeIII GTNAC 4 cut(s) 29, 428, 866, 944
MalI GATC 1 cut(s) 688
MbiI CCGCTC 1 cut(s) 570
MboI GATC 1 cut(s) 686
MboII GAAGA 4 cut(s) 447, 476, 530, 1028
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 1 cut(s) 686
MluCI AATT 8 cut(s) 128, 265, 286, 365, 436, 611, 680, 1088
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 871
MseI TTAA 4 cut(s) 228, 441, 648, 875
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 4 cut(s) 196, 203, 784, 1105
MspR9I CCNGG 3 cut(s) 204, 557, 785
MunI CAATTG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 557
NciI CCSGG 2 cut(s) 204, 785
NdeII GATC 1 cut(s) 686
NlaIII CATG 3 cut(s) 497, 851, 952
NlaIV GGNNCC 1 cut(s) 1008
NmuCI GTSAC 1 cut(s) 428
PceI AGGCCT 1 cut(s) 560
PfeI GAWTC 6 cut(s) 168, 211, 247, 382, 531, 539
PflMI CCANNNNNTGG 1 cut(s) 928
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PshBI ATTAAT 1 cut(s) 228
Psp1406I AACGTT 1 cut(s) 623
Psp6I CCWGG 1 cut(s) 555
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 1 cut(s) 1008
PsuI RGATCY 1 cut(s) 686
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 4 cut(s) 228, 441, 648, 875
Sau3AI GATC 1 cut(s) 686
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 3 cut(s) 204, 557, 785
SfaNI GCATC 3 cut(s) 199, 321, 457
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 825
SmoI CTYRAG 1 cut(s) 825
Sse9I AATT 8 cut(s) 128, 265, 286, 365, 436, 611, 680, 1088
SseBI AGGCCT 1 cut(s) 560
SsiI CCGC 5 cut(s) 236, 568, 808, 815, 887
SspI AATATT 1 cut(s) 910
SspMI CTAG 2 cut(s) 165, 641
StuI AGGCCT 1 cut(s) 560
StyD4I CCNGG 3 cut(s) 202, 555, 783
TaaI ACNGT 2 cut(s) 837, 989
TaiI ACGT 3 cut(s) 189, 626, 946
TaqI TCGA 6 cut(s) 176, 183, 317, 390, 462, 661
TasI AATT 8 cut(s) 128, 265, 286, 365, 436, 611, 680, 1088
TauI GCSGC 1 cut(s) 818
TfiI GAWTC 6 cut(s) 168, 211, 247, 382, 531, 539
Tru1I TTAA 4 cut(s) 228, 441, 648, 875
Tru9I TTAA 4 cut(s) 228, 441, 648, 875
TseFI GTSAC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 3 cut(s) 744, 965, 983
Van91I CCANNNNNTGG 1 cut(s) 928
VspI ATTAAT 1 cut(s) 228
XapI RAATTY 4 cut(s) 286, 611, 680, 1088
XbaI TCTAGA 1 cut(s) 164
XspI CTAG 2 cut(s) 165, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.