RLG00000026015

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007881
Physical Location & Seq
Reverse (-)
28233 .. 32781
4549 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026015

Sequence Viewer

Length: 1176 bp
ATGGAAGAAGCGAAAGCAATGGCTCAACATCAGCAGCAGCAGCAGCAGCTATTGTTACAGCAGCAACAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACACCAGCAACAGCATCAGCAGCATCAGCATCAGCATCAGCAGCAGCAACAACAACAACAACAGTTATTGCTTTTACATCAATTACAAAGACAACAGCAACAGGCGCAACAGGCCGCTGCCATTTCTCGTTTCCCTTCCAACATCGACGCTCATTTGCGCCCACTCCGAGCCCTCAATCTCCAACCTAACCAAATCTCCAACTCCAACCCTAACCCTAACCCTACCCCCAACCCCAACCCCAACCCCAACCCTAACCCTAACCCCAATTCTGTTCTTCCCAATCTCCAACAAAATCCTAATGAGAACCCGCAGCAACAGCCCCAACAGCAGCAGCAACAGAGGGCGATCCGTCCGGGTAACCAGGCCGAGCTGCAAATGGCGTACCAGGACGCCTGGCGGGTCTGCCATCCGGATTTCAAGCGTCCCTTCTCTTCTCTCGAAGACGCATGTGAAAGGCTACTGCCTTACCATGTGGTGGCAGATTATGAGGCTGAAGAGGATGACCGAATCCTTGACTCTGACACTACAGGCATGATGCCATCTCGCTCTCAGCAGTGGGATCACAACATTTCTGCAAAAGTTGCTGAGTTTACAGCAACGTTTGAGAAACAGGCACTGGCCTTCAACATTATCTCCCGCAAGCGTGCTTTTGGGGAATTTAGATCAGAAGAGAGACTTATGATTGAGCAGGCTCTTTGTCAAGAAGAAAAACGAGCATGTCTGGAATTAAGAGCAGAGCTTGATTCAAGAGAAAAAGCTCGAATGGCAGCGATTGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAACACATGCCGAAATGTTGGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGGCTCAAGGCAATGATGTCCCGATTGGTCATGATATGAGAGTACAGGAACACGGGCCTAACCCAGAAGAGATGATAAATGGATGGGGAAATAGTATGCAAAGAGATGAGAAAGAACCATCTGAAGATTTTCTAAATGACGAGGAGACTGAGAATGGATCTACTGGCATGCAGGATGGCTGGCGTGAAGTTGGAGAATTTGATTTGAACACACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

392

Amino Acids

45.09

Weight (kDa)

5.22

Isoelectric Point (pI)

71.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 164 - 278 6.5e-27 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 577
AccIII TCCGGA 1 cut(s) 511
AciI CCGC 4 cut(s) 216, 410, 499, 739
AclI AACGTT 1 cut(s) 701
AclWI GGATC 3 cut(s) 442, 669, 1123
AcsI RAATTY 2 cut(s) 758, 1154
AcuI CTGAAG 2 cut(s) 615, 1101
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 2 cut(s) 485, 1002
AfiI CCNNNNNNNGG 3 cut(s) 577, 942, 943
AflIII ACRYGT 1 cut(s) 1169
AgsI TTSAA 4 cut(s) 520, 727, 849, 1165
AjnI CCWGG 3 cut(s) 462, 486, 494
AluBI AGCT 5 cut(s) 49, 472, 841, 860, 893
AluI AGCT 5 cut(s) 49, 472, 841, 860, 893
Alw21I GWGCWC 1 cut(s) 955
Alw26I GTCTC 2 cut(s) 769, 1097
Alw44I GTGCAC 1 cut(s) 951
AlwI GGATC 3 cut(s) 442, 669, 1123
AlwNI CAGNNNCTG 1 cut(s) 718
Ama87I CYCGRG 2 cut(s) 894, 930
Aor13HI TCCGGA 1 cut(s) 511
AoxI GGCC 5 cut(s) 213, 465, 720, 933, 1013
ApaI GGGCCC 1 cut(s) 937
ApaLI GTGCAC 1 cut(s) 951
ApoI RAATTY 2 cut(s) 758, 1154
Asp700I GAANNNNTTC 1 cut(s) 1086
AspLEI GCGC 2 cut(s) 208, 261
AspS9I GGNCC 3 cut(s) 933, 934, 1013
AsuC2I CCSGG 1 cut(s) 456
AvaI CYCGRG 2 cut(s) 894, 930
BaeGI GKGCMC 2 cut(s) 937, 955
BanII GRGCYC 3 cut(s) 274, 937, 964
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 955
BccI CCATC 5 cut(s) 516, 649, 1035, 1084, 1127
BciT130I CCWGG 3 cut(s) 464, 488, 496
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 769, 1097
BfmI CTRYAG 1 cut(s) 627
Bme1390I CCNGG 4 cut(s) 456, 464, 488, 496
BmeT110I CYCGRG 2 cut(s) 894, 930
BmgT120I GGNCC 3 cut(s) 933, 934, 1013
BmiI GGNNCC 2 cut(s) 935, 936
BmrFI CCNGG 4 cut(s) 456, 464, 488, 496
BmsI GCATC 5 cut(s) 124, 133, 139, 145, 627
BpiI GAAGAC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 948
BpuMI CCSGG 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 492
BsaWI WCCGGW 1 cut(s) 511
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 719, 749
Bsc4I CCNNNNNNNGG 3 cut(s) 577, 942, 943
Bse1I ACTGG 2 cut(s) 723, 1126
Bse3DI GCAATG 2 cut(s) 24, 976
BseAI TCCGGA 1 cut(s) 511
BseBI CCWGG 3 cut(s) 464, 488, 496
BseGI GGATG 4 cut(s) 508, 607, 1046, 1138
BseLI CCNNNNNNNGG 3 cut(s) 577, 942, 943
BseMI GCAATG 2 cut(s) 24, 976
BseMII CTCAG 3 cut(s) 665, 678, 1098
BseNI ACTGG 2 cut(s) 723, 1126
BseRI GAGGAG 1 cut(s) 1115
BseSI GKGCMC 2 cut(s) 937, 955
BshFI GGCC 5 cut(s) 215, 467, 722, 935, 1015
BsiHKAI GWGCWC 1 cut(s) 955
BsiHKCI CYCGRG 2 cut(s) 894, 930
BsiSI CCGG 2 cut(s) 455, 512
BslFI GGGAC 2 cut(s) 510, 962
BslI CCNNNNNNNGG 3 cut(s) 577, 942, 943
BsmAI GTCTC 2 cut(s) 769, 1097
BsmFI GGGAC 2 cut(s) 510, 962
BsnI GGCC 5 cut(s) 215, 467, 722, 935, 1015
BsoBI CYCGRG 2 cut(s) 894, 930
Bsp120I GGGCCC 1 cut(s) 933
Bsp1286I GDGCHC 4 cut(s) 274, 937, 955, 964
Bsp13I TCCGGA 1 cut(s) 511
Bsp143I GATC 4 cut(s) 447, 661, 764, 1115
BspACI CCGC 4 cut(s) 216, 410, 499, 739
BspANI GGCC 5 cut(s) 215, 467, 722, 935, 1015
BspCNI CTCAG 3 cut(s) 664, 679, 1099
BspEI TCCGGA 1 cut(s) 511
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 2 cut(s) 935, 936
BspPI GGATC 3 cut(s) 442, 669, 1123
BsrDI GCAATG 2 cut(s) 24, 976
BsrI ACTGG 2 cut(s) 723, 1126
BssMI GATC 4 cut(s) 447, 661, 764, 1115
BssNI GRCGYC 1 cut(s) 492
Bst2UI CCWGG 3 cut(s) 464, 488, 496
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 4 cut(s) 538, 591, 765, 1020
BstACI GRCGYC 1 cut(s) 492
BstAPI GCANNNNNTGC 1 cut(s) 683
BstC8I GCNNGC 6 cut(s) 743, 747, 792, 891, 1127, 1139
BstDEI CTNAG 3 cut(s) 651, 687, 1107
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 4 cut(s) 508, 607, 1046, 1138
BstHHI GCGC 2 cut(s) 208, 261
BstKTI GATC 4 cut(s) 450, 664, 767, 1118
BstMAI GTCTC 2 cut(s) 769, 1097
BstMBI GATC 4 cut(s) 447, 661, 764, 1115
BstNI CCWGG 3 cut(s) 464, 488, 496
BstNSI RCATGY 4 cut(s) 552, 822, 917, 1129
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 4 cut(s) 454, 462, 486, 494
BstSFI CTRYAG 1 cut(s) 627
BstSLI GKGCMC 2 cut(s) 937, 955
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 1 cut(s) 1115
BstYI RGATCY 1 cut(s) 1115
BsuRI GGCC 5 cut(s) 215, 467, 722, 935, 1015
BtsCI GGATG 4 cut(s) 508, 607, 1046, 1138
BtsI GCAGTG 1 cut(s) 662
BtsIMutI CAGTG 2 cut(s) 662, 716
Cac8I GCNNGC 6 cut(s) 743, 747, 792, 891, 1127, 1139
CaiI CAGNNNCTG 1 cut(s) 718
CciI TCATGA 1 cut(s) 988
CfoI GCGC 2 cut(s) 208, 261
Cfr13I GGNCC 3 cut(s) 933, 934, 1013
CseI GACGC 4 cut(s) 257, 500, 512, 554
Csp6I GTAC 2 cut(s) 484, 1001
CviAII CATG 7 cut(s) 549, 572, 634, 819, 914, 989, 1126
CviQI GTAC 2 cut(s) 484, 1001
DdeI CTNAG 3 cut(s) 651, 687, 1107
DpnI GATC 4 cut(s) 449, 663, 766, 1117
DpnII GATC 4 cut(s) 447, 661, 764, 1115
Eam1104I CTCTTC 4 cut(s) 538, 591, 765, 1020
EarI CTCTTC 4 cut(s) 538, 591, 765, 1020
Eco24I GRGCYC 3 cut(s) 274, 937, 964
Eco57I CTGAAG 2 cut(s) 615, 1101
Eco88I CYCGRG 2 cut(s) 894, 930
Eco91I GGTNACC 1 cut(s) 458
EcoO109I RGGNCCY 1 cut(s) 934
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 3 cut(s) 462, 486, 494
EcoT38I GRGCYC 3 cut(s) 274, 937, 964
FaeI CATG 7 cut(s) 552, 575, 637, 822, 917, 992, 1129
FalI AAGNNNNNCTT 4 cut(s) 512, 544, 762, 794
FaqI GGGAC 2 cut(s) 510, 962
FatI CATG 7 cut(s) 548, 571, 633, 818, 913, 988, 1125
FauI CCCGC 3 cut(s) 417, 492, 746
FokI GGATG 4 cut(s) 495, 614, 1053, 1145
FriOI GRGCYC 3 cut(s) 274, 937, 964
GlaI GCGC 2 cut(s) 207, 260
HaeIII GGCC 5 cut(s) 215, 467, 722, 935, 1015
HapII CCGG 2 cut(s) 455, 512
HgaI GACGC 4 cut(s) 257, 500, 512, 554
HhaI GCGC 2 cut(s) 208, 261
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 7 cut(s) 552, 575, 637, 822, 917, 992, 1129
Hin6I GCGC 2 cut(s) 206, 259
HinP1I GCGC 2 cut(s) 206, 259
HinfI GANTC 4 cut(s) 609, 617, 845, 902
HpaII CCGG 2 cut(s) 455, 512
Hpy166II GTNNAC 2 cut(s) 693, 953
Hpy188I TCNGA 4 cut(s) 269, 622, 769, 1081
Hpy188III TCNNGA 7 cut(s) 512, 539, 803, 824, 849, 979, 989
Hpy8I GTNNAC 2 cut(s) 693, 953
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 246, 538, 733
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 2 cut(s) 701, 1171
HpyCH4V TGCA 5 cut(s) 475, 677, 953, 1057, 1129
HpyF3I CTNAG 3 cut(s) 651, 687, 1107
HpySE526I ACGT 2 cut(s) 701, 1171
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 7 cut(s) 552, 575, 637, 822, 917, 992, 1129
HspAI GCGC 2 cut(s) 206, 259
Kpn2I TCCGGA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 447, 661, 764, 1115
LweI GCATC 5 cut(s) 124, 133, 139, 145, 627
MaeII ACGT 2 cut(s) 701, 1171
MaeIII GTNAC 3 cut(s) 54, 458, 903
MalI GATC 4 cut(s) 449, 663, 766, 1117
MboI GATC 4 cut(s) 447, 661, 764, 1115
MboII GAAGA 9 cut(s) 17, 368, 525, 554, 608, 782, 818, 1037, 1094
MflI RGATCY 1 cut(s) 1115
MhlI GDGCHC 4 cut(s) 274, 937, 955, 964
MluCI AATT 5 cut(s) 182, 367, 758, 827, 1154
MlyI GAGTC 2 cut(s) 611, 911
MmeI TCCRAC 6 cut(s) 264, 307, 324, 330, 412, 1129
MnlI CCTC 5 cut(s) 284, 435, 583, 592, 1093
MroI TCCGGA 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 1086
MseI TTAA 2 cut(s) 830, 1174
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 455, 512
MspR9I CCNGG 4 cut(s) 456, 464, 488, 496
MvaI CCWGG 3 cut(s) 464, 488, 496
NciI CCSGG 1 cut(s) 456
NdeII GATC 4 cut(s) 447, 661, 764, 1115
NlaIII CATG 7 cut(s) 552, 575, 637, 822, 917, 992, 1129
NlaIV GGNNCC 2 cut(s) 935, 936
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 903
NspI RCATGY 4 cut(s) 552, 822, 917, 1129
PaeI GCATGC 1 cut(s) 1129
PagI TCATGA 1 cut(s) 988
PdmI GAANNNNTTC 1 cut(s) 1086
PfeI GAWTC 2 cut(s) 609, 845
PflMI CCANNNNNTGG 1 cut(s) 577
PleI GAGTC 2 cut(s) 611, 910
PpsI GAGTC 2 cut(s) 611, 910
Psp1406I AACGTT 1 cut(s) 701
Psp6I CCWGG 3 cut(s) 462, 486, 494
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 3 cut(s) 462, 486, 494
PspN4I GGNNCC 2 cut(s) 935, 936
PspOMI GGGCCC 1 cut(s) 933
PspPI GGNCC 3 cut(s) 933, 934, 1013
PstNI CAGNNNCTG 1 cut(s) 718
PsuI RGATCY 1 cut(s) 1115
RsaI GTAC 2 cut(s) 485, 1002
RsaNI GTAC 2 cut(s) 484, 1001
SaqAI TTAA 2 cut(s) 830, 1174
Sau3AI GATC 4 cut(s) 447, 661, 764, 1115
Sau96I GGNCC 3 cut(s) 933, 934, 1013
SchI GAGTC 2 cut(s) 611, 911
ScrFI CCNGG 4 cut(s) 456, 464, 488, 496
SduI GDGCHC 4 cut(s) 274, 937, 955, 964
SetI ASST 8 cut(s) 51, 289, 474, 704, 843, 862, 895, 1174
SfaNI GCATC 5 cut(s) 124, 133, 139, 145, 627
SfcI CTRYAG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 963
SmoI CTYRAG 1 cut(s) 963
SphI GCATGC 1 cut(s) 1129
Sse9I AATT 5 cut(s) 182, 367, 758, 827, 1154
SsiI CCGC 4 cut(s) 216, 410, 499, 739
StyD4I CCNGG 4 cut(s) 454, 462, 486, 494
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 2 cut(s) 704, 1174
TaqI TCGA 3 cut(s) 246, 540, 862
TaqII GACCGA 1 cut(s) 621
TasI AATT 5 cut(s) 182, 367, 758, 827, 1154
TatI WGTACW 1 cut(s) 1000
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 2 cut(s) 609, 845
Tru1I TTAA 2 cut(s) 830, 1174
Tru9I TTAA 2 cut(s) 830, 1174
TscAI CASTG 2 cut(s) 662, 723
TseFI GTSAC 1 cut(s) 903
Tsp45I GTSAC 1 cut(s) 903
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 2 cut(s) 662, 723
Van91I CCANNNNNTGG 1 cut(s) 577
VneI GTGCAC 1 cut(s) 951
XapI RAATTY 2 cut(s) 758, 1154
XceI RCATGY 4 cut(s) 552, 822, 917, 1129
XmnI GAANNNNTTC 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.