MD01G1239600.v1.1

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0007881
Physical Location & Seq
Reverse (-)
32569911 .. 32573599
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1239600.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGAAGAGGAGAAGGCATTGCAGCAGCAGCAGCAGCAGCAGCATCTATTGCTACAGCAGCAACAACAACAACAGCAACAGCAACAGCAGCACCATCAACATAACCAGCAGCAGTTATTGCTTTTACAACAAATGCAAAGGCAACAGCAACAGGCCGCTGCCATTTCCCGTTTCCCTTCCAACATCGACGCCCATTTGCGCCCACTCCGAGCCATAAATCTCCAGCCTAACCCTAACCCTAATTCCGCTCCTAATCTTCAACAAAATCCTGTTGCCAACCCCCAGCAACAGCAGCAGCAGCCCCAACAGCCCCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGAGGGTGATCCGACCCGGGAACCAGGCGGAGCTACAGATGGCATACCAGGACGCCTGGAGGGTCTGCCATCCCGATTTCAAGCGTCCCTTCTCTTCGCTCGAAGACGCCTGCGAGAGGTTGCTGCCTTATCATGTAGTGGCAGATTATGAGGCAGAGGAGGATGACAGAATCCTCGACTCTGACACCACAGGCACGATTCCATCTCGCTCTCAGCAGTGGGATCACAACATATCTGCTAAAGTTGCAGAGTTTACAGCAACATTTGAGAAACAGGCACTAGCCTTTAACATAATTTCCCGTAAGCGAGCTTTGGGGGAATTTCGGTCCGAAGAGAGACTTATGATTGAGCAGGCTCTTTGCCAAGAAGAAAAAAGGACATGTCTGGAATTGAGAGCAGAGTTTGATTCAAGAGAGAAAGCTGGCCGGGAAGCTAAATTACGAGCTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAGCACATGCTGAAATGTTAGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGTCTGAAGGCAATGACGTTTCGATTGGGCATGACATGAGAGAGCAGGAACATGGGGTTAACCCAGAAGAGATGATAAATGGATGGGGAAATAATATGCAAAGAGATGAGAAGGAACCATGTGAGGATTTTTTAAATGATGAAGAGACTGAGAATGGATCCATGGGCATGCAGGACGGCTGGCGTGAAGTTGGGGAGTTTGATTTGAACACTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

362

Amino Acids

41.83

Weight (kDa)

5.05

Isoelectric Point (pI)

77.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 132 - 246 5e-27 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 248
AciI CCGC 3 cut(s) 156, 246, 371
AclWI GGATC 4 cut(s) 346, 573, 1020, 1033
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 894
AcyI GRCGYC 3 cut(s) 189, 396, 450
AfiI CCNNNNNNNGG 3 cut(s) 459, 852, 853
AflIII ACRYGT 1 cut(s) 722
AgsI TTSAA 4 cut(s) 260, 424, 753, 1075
AjnI CCWGG 3 cut(s) 366, 390, 398
AluBI AGCT 7 cut(s) 376, 653, 764, 776, 788, 803, 839
AluI AGCT 7 cut(s) 376, 653, 764, 776, 788, 803, 839
Alw21I GWGCWC 2 cut(s) 790, 865
Alw26I GTCTC 2 cut(s) 673, 1007
Alw44I GTGCAC 1 cut(s) 861
AlwI GGATC 4 cut(s) 346, 573, 1020, 1033
Ama87I CYCGRG 3 cut(s) 359, 804, 840
AoxI GGCC 3 cut(s) 153, 766, 843
ApaI GGGCCC 1 cut(s) 847
ApaLI GTGCAC 1 cut(s) 861
ApoI RAATTY 1 cut(s) 662
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 3 cut(s) 669, 843, 844
AsuC2I CCSGG 3 cut(s) 360, 361, 770
AsuHPI GGTGA 1 cut(s) 361
AvaI CYCGRG 3 cut(s) 359, 804, 840
AvaII GGWCC 1 cut(s) 669
BaeGI GKGCMC 2 cut(s) 847, 865
BamHI GGATCC 1 cut(s) 1025
BanII GRGCYC 2 cut(s) 790, 847
BarI GAAGNNNNNNTAC 2 cut(s) 765, 797
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 2 cut(s) 790, 865
BccI CCATC 5 cut(s) 102, 376, 420, 553, 945
BceAI ACGGC 1 cut(s) 1060
BciT130I CCWGG 3 cut(s) 368, 392, 400
BcnI CCSGG 3 cut(s) 360, 361, 770
BcoDI GTCTC 2 cut(s) 673, 1007
BfaI CTAG 1 cut(s) 623
BfmI CTRYAG 2 cut(s) 53, 377
Bme1390I CCNGG 6 cut(s) 360, 361, 368, 392, 400, 770
Bme18I GGWCC 1 cut(s) 669
BmeT110I CYCGRG 3 cut(s) 359, 804, 840
BmgT120I GGNCC 3 cut(s) 669, 843, 844
BmiI GGNNCC 5 cut(s) 365, 845, 846, 984, 1027
BmrFI CCNGG 6 cut(s) 360, 361, 368, 392, 400, 770
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 2 cut(s) 206, 421
Bpu10I CCTNAGC 1 cut(s) 789
BpuMI CCSGG 3 cut(s) 360, 361, 770
BsaHI GRCGYC 3 cut(s) 189, 396, 450
BsaJI CCNNGG 2 cut(s) 359, 1029
Bsc4I CCNNNNNNNGG 3 cut(s) 459, 852, 853
Bse3DI GCAATG 2 cut(s) 17, 886
BseBI CCWGG 3 cut(s) 368, 392, 400
BseDI CCNNGG 2 cut(s) 359, 1029
BseGI GGATG 3 cut(s) 412, 511, 956
BseLI CCNNNNNNNGG 3 cut(s) 459, 852, 853
BseMI GCAATG 2 cut(s) 17, 886
BseMII CTCAG 3 cut(s) 569, 803, 1008
BseRI GAGGAG 2 cut(s) 23, 515
BseSI GKGCMC 2 cut(s) 847, 865
BseYI CCCAGC 1 cut(s) 282
BshFI GGCC 3 cut(s) 155, 768, 845
BsiHKAI GWGCWC 2 cut(s) 790, 865
BsiHKCI CYCGRG 3 cut(s) 359, 804, 840
BsiSI CCGG 2 cut(s) 360, 769
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 3 cut(s) 459, 852, 853
BsmAI GTCTC 2 cut(s) 673, 1007
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 3 cut(s) 155, 768, 845
BsoBI CYCGRG 3 cut(s) 359, 804, 840
Bsp120I GGGCCC 1 cut(s) 843
Bsp1286I GDGCHC 3 cut(s) 790, 847, 865
Bsp143I GATC 3 cut(s) 351, 565, 1025
Bsp19I CCATGG 1 cut(s) 1029
BspACI CCGC 3 cut(s) 156, 246, 371
BspANI GGCC 3 cut(s) 155, 768, 845
BspCNI CTCAG 3 cut(s) 568, 802, 1009
BspLI GGNNCC 5 cut(s) 365, 845, 846, 984, 1027
BspPI GGATC 4 cut(s) 346, 573, 1020, 1033
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 17, 886
BssECI CCNNGG 2 cut(s) 359, 1029
BssMI GATC 3 cut(s) 351, 565, 1025
BssNI GRCGYC 3 cut(s) 189, 396, 450
BssT1I CCWWGG 1 cut(s) 1029
Bst2UI CCWGG 3 cut(s) 368, 392, 400
Bst6I CTCTTC 4 cut(s) 442, 669, 930, 1005
BstACI GRCGYC 3 cut(s) 189, 396, 450
BstAPI GCANNNNNTGC 2 cut(s) 49, 118
BstC8I GCNNGC 7 cut(s) 454, 651, 696, 766, 801, 1037, 1049
BstDEI CTNAG 3 cut(s) 555, 789, 1017
BstDSI CCRYGG 1 cut(s) 1029
BstENI CCTNNNNNAGG 1 cut(s) 457
BstF5I GGATG 3 cut(s) 412, 511, 956
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 3 cut(s) 354, 568, 1028
BstMAI GTCTC 2 cut(s) 673, 1007
BstMBI GATC 3 cut(s) 351, 565, 1025
BstNI CCWGG 3 cut(s) 368, 392, 400
BstNSI RCATGY 3 cut(s) 726, 827, 1039
BstSCI CCNGG 6 cut(s) 358, 359, 366, 390, 398, 768
BstSFI CTRYAG 2 cut(s) 53, 377
BstSLI GKGCMC 2 cut(s) 847, 865
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 1025
BstYI RGATCY 1 cut(s) 1025
BsuRI GGCC 3 cut(s) 155, 768, 845
BtgI CCRYGG 1 cut(s) 1029
BtsCI GGATG 3 cut(s) 412, 511, 956
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 1 cut(s) 566
Cac8I GCNNGC 7 cut(s) 454, 651, 696, 766, 801, 1037, 1049
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 3 cut(s) 669, 843, 844
Cfr9I CCCGGG 1 cut(s) 359
CpoI CGGWCCG 1 cut(s) 669
CseI GACGC 4 cut(s) 197, 404, 416, 458
CspI CGGWCCG 1 cut(s) 669
CviAII CATG 9 cut(s) 476, 723, 824, 899, 904, 920, 987, 1030, 1036
DdeI CTNAG 3 cut(s) 555, 789, 1017
DpnI GATC 3 cut(s) 353, 567, 1027
DpnII GATC 3 cut(s) 351, 565, 1025
DraI TTTAAA 1 cut(s) 1002
EaeI YGGCCR 1 cut(s) 766
Eam1104I CTCTTC 4 cut(s) 442, 669, 930, 1005
EarI CTCTTC 4 cut(s) 442, 669, 930, 1005
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 788
Eco130I CCWWGG 1 cut(s) 1029
Eco24I GRGCYC 2 cut(s) 790, 847
Eco47I GGWCC 1 cut(s) 669
Eco53kI GAGCTC 1 cut(s) 788
Eco57I CTGAAG 1 cut(s) 894
Eco88I CYCGRG 3 cut(s) 359, 804, 840
EcoICRI GAGCTC 1 cut(s) 788
EcoNI CCTNNNNNAGG 1 cut(s) 457
EcoO109I RGGNCCY 1 cut(s) 844
EcoRII CCWGG 3 cut(s) 366, 390, 398
EcoT14I CCWWGG 1 cut(s) 1029
EcoT38I GRGCYC 2 cut(s) 790, 847
ErhI CCWWGG 1 cut(s) 1029
FaeI CATG 9 cut(s) 479, 726, 827, 902, 907, 923, 990, 1033, 1039
FalI AAGNNNNNCTT 4 cut(s) 416, 448, 666, 698
FaqI GGGAC 1 cut(s) 414
FatI CATG 9 cut(s) 475, 722, 823, 898, 903, 919, 986, 1029, 1035
FokI GGATG 3 cut(s) 399, 518, 963
FriOI GRGCYC 2 cut(s) 790, 847
FspBI CTAG 1 cut(s) 623
GlaI GCGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 286
GsuI CTGGAG 2 cut(s) 206, 421
HaeIII GGCC 3 cut(s) 155, 768, 845
HapII CCGG 2 cut(s) 360, 769
HgaI GACGC 4 cut(s) 197, 404, 416, 458
HhaI GCGC 1 cut(s) 201
Hin1I GRCGYC 3 cut(s) 189, 396, 450
Hin1II CATG 9 cut(s) 479, 726, 827, 902, 907, 923, 990, 1033, 1039
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HinfI GANTC 5 cut(s) 513, 521, 541, 749, 812
HpaI GTTAAC 1 cut(s) 928
HpaII CCGG 2 cut(s) 360, 769
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 3 cut(s) 597, 863, 928
Hpy188I TCNGA 5 cut(s) 209, 356, 526, 673, 874
Hpy188III TCNNGA 3 cut(s) 416, 728, 753
Hpy8I GTNNAC 3 cut(s) 597, 863, 928
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 5 cut(s) 7, 186, 442, 869, 973
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 6 cut(s) 22, 136, 590, 863, 967, 1039
HpyF3I CTNAG 3 cut(s) 555, 789, 1017
HpySE526I ACGT 1 cut(s) 885
Hsp92I GRCGYC 3 cut(s) 189, 396, 450
Hsp92II CATG 9 cut(s) 479, 726, 827, 902, 907, 923, 990, 1033, 1039
HspAI GCGC 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 928
Kzo9I GATC 3 cut(s) 351, 565, 1025
LmnI GCTCC 2 cut(s) 253, 373
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 623
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 1 cut(s) 813
MalI GATC 3 cut(s) 353, 567, 1027
MbiI CCGCTC 1 cut(s) 248
MboI GATC 3 cut(s) 351, 565, 1025
MboII GAAGA 8 cut(s) 17, 248, 429, 458, 686, 722, 947, 1022
MflI RGATCY 1 cut(s) 1025
MhlI GDGCHC 3 cut(s) 790, 847, 865
MluCI AATT 5 cut(s) 241, 636, 662, 731, 779
MlyI GAGTC 2 cut(s) 515, 821
MmeI TCCRAC 2 cut(s) 204, 379
MnlI CCTC 8 cut(s) 339, 396, 453, 487, 493, 496, 527, 985
MseI TTAA 4 cut(s) 630, 927, 1001, 1084
MslI CAYNNNNRTG 1 cut(s) 1034
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 360, 769
MspR9I CCNGG 6 cut(s) 360, 361, 368, 392, 400, 770
MvaI CCWGG 3 cut(s) 368, 392, 400
NciI CCSGG 3 cut(s) 360, 361, 770
NcoI CCATGG 1 cut(s) 1029
NdeII GATC 3 cut(s) 351, 565, 1025
NlaIII CATG 9 cut(s) 479, 726, 827, 902, 907, 923, 990, 1033, 1039
NlaIV GGNNCC 5 cut(s) 365, 845, 846, 984, 1027
NmuCI GTSAC 1 cut(s) 813
NspI RCATGY 3 cut(s) 726, 827, 1039
PaeI GCATGC 1 cut(s) 1039
PciI ACATGT 1 cut(s) 722
PfeI GAWTC 3 cut(s) 513, 541, 749
PleI GAGTC 2 cut(s) 515, 820
PpsI GAGTC 2 cut(s) 515, 820
PscI ACATGT 1 cut(s) 722
Psp124BI GAGCTC 1 cut(s) 790
Psp6I CCWGG 3 cut(s) 366, 390, 398
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 3 cut(s) 366, 390, 398
PspN4I GGNNCC 5 cut(s) 365, 845, 846, 984, 1027
PspOMI GGGCCC 1 cut(s) 843
PspPI GGNCC 3 cut(s) 669, 843, 844
PsuI RGATCY 1 cut(s) 1025
RseI CAYNNNNRTG 1 cut(s) 1034
Rsr2I CGGWCCG 1 cut(s) 669
RsrII CGGWCCG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 790
SaqAI TTAA 4 cut(s) 630, 927, 1001, 1084
Sau3AI GATC 3 cut(s) 351, 565, 1025
Sau96I GGNCC 3 cut(s) 669, 843, 844
SchI GAGTC 2 cut(s) 515, 821
ScrFI CCNGG 6 cut(s) 360, 361, 368, 392, 400, 770
SduI GDGCHC 3 cut(s) 790, 847, 865
SetI ASST 9 cut(s) 378, 464, 655, 766, 778, 790, 805, 841, 888
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 2 cut(s) 53, 377
SinI GGWCC 1 cut(s) 669
SmaI CCCGGG 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 1034
SphI GCATGC 1 cut(s) 1039
Sse9I AATT 5 cut(s) 241, 636, 662, 731, 779
SsiI CCGC 3 cut(s) 156, 246, 371
SspMI CTAG 1 cut(s) 623
SstI GAGCTC 1 cut(s) 790
StyD4I CCNGG 6 cut(s) 358, 359, 366, 390, 398, 768
StyI CCWWGG 1 cut(s) 1029
TaiI ACGT 1 cut(s) 888
TaqI TCGA 4 cut(s) 186, 444, 519, 890
TaqII GACCGA 1 cut(s) 657
TasI AATT 5 cut(s) 241, 636, 662, 731, 779
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 3 cut(s) 513, 541, 749
Tru1I TTAA 4 cut(s) 630, 927, 1001, 1084
Tru9I TTAA 4 cut(s) 630, 927, 1001, 1084
TscAI CASTG 1 cut(s) 566
TseFI GTSAC 1 cut(s) 813
Tsp45I GTSAC 1 cut(s) 813
TspDTI ATGAA 1 cut(s) 1023
TspMI CCCGGG 1 cut(s) 359
TspRI CASTG 1 cut(s) 566
VneI GTGCAC 1 cut(s) 861
VpaK11BI GGWCC 1 cut(s) 669
XagI CCTNNNNNAGG 1 cut(s) 457
XapI RAATTY 1 cut(s) 662
XceI RCATGY 3 cut(s) 726, 827, 1039
XmaI CCCGGG 1 cut(s) 359
XspI CTAG 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.