Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014575.1

Orthogroup ID

OG0007881

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3600

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014575.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 229 bp

gttactgccttaccatgtggtggcagattatgaggctgaagaggatgaccgaatccttgactctgacactacaggcatgatgccatctcgctctcagcagtgggatcacaacatttctgcaaaagttgctgagtttacggcaacgtttgagaaacaggcactggccttcaacattatctcccgcaagcgtgcttttggggaatttagatcagaagagacttatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTSCR1

Protein Analysis

75

Amino Acids

8.69

Weight (kDa)

4.63

Isoelectric Point (pI)

81.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17510 AT5G17510
fragaria_vesca	FvH4_7g34300 FvH4_7g34300
malus_domestica	MD01G1239600.v1.1
prunus_persica	Prupe.2G329500_v2.0.a1
pyrus_communis	pycom07g28390
rosa_chinensis	RchiOBHm_Chr1g0384691
rosa_laevigata	RLG00000026015
rosa_multiflora	Rmu_sc0003829.1_g000048 Rmu_sc0003829.1_g000049 Rmu_sc0014575.1_g000001 Rmu_sc0014575.1_g000002 Rmu_sc0032400.1_g000001 Rmu_sc0032400.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276450 Rroxscaffold_7G00217990
rosa_rugosa	Rorug01G0450800
rosa_samantha	Rh1AG475300 Rh1BG433500 Rh1CG447000 Rh1DG466000 Rh6BG009800
rosa_wichuraiana	Rw1G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	1 cut(s)	182
AclI	AACGTT	1 cut(s)	144
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	201
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	108, 121
BseNI	ACTGG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	104, 207
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	107, 122
BspPI	GGATC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	104, 207
Bst6I	CTCTTC	2 cut(s)	34, 208
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	186, 190
BstDEI	CTNAG	2 cut(s)	94, 130
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	107, 210
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	104, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	50
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 159
Cac8I	GCNNGC	2 cut(s)	186, 190
CaiI	CAGNNNCTG	1 cut(s)	161
CviAII	CATG	2 cut(s)	15, 77
CviJI	RGCY	2 cut(s)	36, 165
CviKI_1	RGCY	2 cut(s)	36, 165
DdeI	CTNAG	2 cut(s)	94, 130
DpnI	GATC	2 cut(s)	106, 209
DpnII	GATC	2 cut(s)	104, 207
Eam1104I	CTCTTC	2 cut(s)	34, 208
EarI	CTCTTC	2 cut(s)	34, 208
Eco57I	CTGAAG	1 cut(s)	58
FaeI	CATG	2 cut(s)	18, 80
FaiI	YATR	4 cut(s)	16, 31, 78, 223
FatI	CATG	2 cut(s)	14, 76
FauI	CCCGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	18, 80
HinfI	GANTC	2 cut(s)	52, 60
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	65, 212
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	2 cut(s)	94, 130
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	18, 80
Kzo9I	GATC	2 cut(s)	104, 207
LpnPI	CCDG	3 cut(s)	58, 141, 147
LweI	GCATC	1 cut(s)	70
MaeII	ACGT	1 cut(s)	144
MalI	GATC	2 cut(s)	106, 209
MboI	GATC	2 cut(s)	104, 207
MboII	GAAGA	2 cut(s)	51, 225
MluCI	AATT	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	26, 35
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	2 cut(s)	104, 207
NlaIII	CATG	2 cut(s)	18, 80
PfeI	GAWTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	20
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	104, 207
SchI	GAGTC	1 cut(s)	54
SetI	ASST	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	70
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	182
TaiI	ACGT	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	52
TscAI	CASTG	2 cut(s)	105, 166
TspRI	CASTG	2 cut(s)	105, 166
Van91I	CCANNNNNTGG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.