Rh1DG466000

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007881
Physical Location & Seq
Forward (+)
66755218 .. 66760418
5201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG466000.1

Sequence Viewer

Length: 651 bp
ATGATATCACAATATCGACTCAGTTTCGAATGGTTACTGCCTTACCATGTGGTGGCAGATTATGAGGCTGAAGAGGATGACCGAATCCTTGACTCTGACACTACAGGCATGATGCCATCTCGCTCTCAGCAGTGGGATCACAACATTTCTGCAAAAGTTGCTGAGTTTACAGCAACGTTTGAGAAACAGGCACTGGCCTTCAACATTATCTCCCGCAAGCGTGCTTTTGGGGAATTTAGATCAGAAGAGAGACTTATGATTGAGCAAGCTCTTTGCCAAGAAGAAAAACGAGCATGTCTGGAATTAAGAGCAGAGCTTGATTCAAGAGAAAAAGCTCGAATGGCAGCGATTGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAACACATGCCGAAATGTTGGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGGCTCAAGGCAATGATGTCCCGATTGGTCATGATATGAGAGTACAGGAACACGGGGCTAACCCAGAAGAGATGATAAATGGATGGGGAAATAGTATGCAAAGAGATGAGAAAGAACCATCTGAAGATTTTCTAAATGACGAGGAGACTGAGAATGGATCTACTGGCATGCAGGATGGCTGGCGTGAAGTTGGAGAATTTGATTTGAACACACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

216

Amino Acids

24.7

Weight (kDa)

4.64

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 10 - 103 1.7e-13 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 52
AciI CCGC 1 cut(s) 214
AclI AACGTT 1 cut(s) 176
AclWI GGATC 2 cut(s) 144, 598
AcsI RAATTY 2 cut(s) 233, 629
AcuI CTGAAG 2 cut(s) 90, 576
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 3 cut(s) 52, 417, 418
AflIII ACRYGT 1 cut(s) 644
AgsI TTSAA 3 cut(s) 202, 324, 640
AluBI AGCT 4 cut(s) 269, 316, 335, 368
AluI AGCT 4 cut(s) 269, 316, 335, 368
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 2 cut(s) 244, 572
Alw44I GTGCAC 1 cut(s) 426
AlwI GGATC 2 cut(s) 144, 598
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 2 cut(s) 369, 405
AoxI GGCC 2 cut(s) 195, 408
ApaI GGGCCC 1 cut(s) 412
ApaLI GTGCAC 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 2 cut(s) 233, 629
Asp700I GAANNNNTTC 1 cut(s) 561
AspS9I GGNCC 2 cut(s) 408, 409
AsuII TTCGAA 1 cut(s) 27
AvaI CYCGRG 2 cut(s) 369, 405
BaeGI GKGCMC 2 cut(s) 412, 430
BanII GRGCYC 2 cut(s) 412, 439
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 356
BccI CCATC 4 cut(s) 124, 510, 559, 602
BcoDI GTCTC 2 cut(s) 244, 572
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmeT110I CYCGRG 2 cut(s) 369, 405
BmgT120I GGNCC 2 cut(s) 408, 409
BmiI GGNNCC 2 cut(s) 410, 411
BmsI GCATC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 417, 418
Bse1I ACTGG 2 cut(s) 198, 601
Bse3DI GCAATG 1 cut(s) 451
BseGI GGATG 3 cut(s) 82, 521, 613
BseLI CCNNNNNNNGG 3 cut(s) 52, 417, 418
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 4 cut(s) 34, 140, 153, 573
BseNI ACTGG 2 cut(s) 198, 601
BseRI GAGGAG 1 cut(s) 590
BseSI GKGCMC 2 cut(s) 412, 430
BseXI GCAGC 1 cut(s) 356
BshFI GGCC 2 cut(s) 197, 410
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 2 cut(s) 369, 405
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 3 cut(s) 52, 417, 418
BsmAI GTCTC 2 cut(s) 244, 572
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 2 cut(s) 197, 410
BsoBI CYCGRG 2 cut(s) 369, 405
Bsp119I TTCGAA 1 cut(s) 27
Bsp120I GGGCCC 1 cut(s) 408
Bsp1286I GDGCHC 3 cut(s) 412, 430, 439
Bsp143I GATC 3 cut(s) 136, 239, 590
BspACI CCGC 1 cut(s) 214
BspANI GGCC 2 cut(s) 197, 410
BspCNI CTCAG 4 cut(s) 33, 139, 154, 574
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 410, 411
BspPI GGATC 2 cut(s) 144, 598
BspT104I TTCGAA 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 2 cut(s) 198, 601
BssMI GATC 3 cut(s) 136, 239, 590
Bst6I CTCTTC 3 cut(s) 66, 240, 495
BstAPI GCANNNNNTGC 1 cut(s) 158
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 6 cut(s) 218, 222, 267, 366, 602, 614
BstDEI CTNAG 4 cut(s) 20, 126, 162, 582
BstF5I GGATG 3 cut(s) 82, 521, 613
BstKTI GATC 3 cut(s) 139, 242, 593
BstMAI GTCTC 2 cut(s) 244, 572
BstMBI GATC 3 cut(s) 136, 239, 590
BstMWI GCNNNNNNNGC 4 cut(s) 158, 341, 365, 434
BstNSI RCATGY 3 cut(s) 297, 392, 604
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 2 cut(s) 412, 430
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 590
BstYI RGATCY 1 cut(s) 590
BsuRI GGCC 2 cut(s) 197, 410
BtsCI GGATG 3 cut(s) 82, 521, 613
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 137, 191
Cac8I GCNNGC 6 cut(s) 218, 222, 267, 366, 602, 614
CaiI CAGNNNCTG 1 cut(s) 193
CciI TCATGA 1 cut(s) 463
Cfr13I GGNCC 2 cut(s) 408, 409
Csp6I GTAC 1 cut(s) 476
CviAII CATG 6 cut(s) 47, 109, 294, 389, 464, 601
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 4 cut(s) 20, 126, 162, 582
DpnI GATC 3 cut(s) 138, 241, 592
DpnII GATC 3 cut(s) 136, 239, 590
Eam1104I CTCTTC 3 cut(s) 66, 240, 495
EarI CTCTTC 3 cut(s) 66, 240, 495
Eco24I GRGCYC 2 cut(s) 412, 439
Eco32I GATATC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 90, 576
Eco88I CYCGRG 2 cut(s) 369, 405
EcoO109I RGGNCCY 1 cut(s) 409
EcoRV GATATC 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 412, 439
FaeI CATG 6 cut(s) 50, 112, 297, 392, 467, 604
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 1 cut(s) 437
FatI CATG 6 cut(s) 46, 108, 293, 388, 463, 600
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 3 cut(s) 89, 528, 620
FriOI GRGCYC 2 cut(s) 412, 439
Fsp4HI GCNGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 345
HaeIII GGCC 2 cut(s) 197, 410
Hin1II CATG 6 cut(s) 50, 112, 297, 392, 467, 604
HinfI GANTC 5 cut(s) 18, 84, 92, 320, 377
Hpy166II GTNNAC 2 cut(s) 168, 428
Hpy188I TCNGA 3 cut(s) 97, 244, 556
Hpy188III TCNNGA 4 cut(s) 299, 324, 454, 464
Hpy8I GTNNAC 2 cut(s) 168, 428
HpyAV CCTTC 1 cut(s) 208
HpyCH4IV ACGT 2 cut(s) 176, 646
HpyCH4V TGCA 4 cut(s) 152, 428, 532, 604
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 341, 365, 434
HpyF3I CTNAG 4 cut(s) 20, 126, 162, 582
HpySE526I ACGT 2 cut(s) 176, 646
Hsp92II CATG 6 cut(s) 50, 112, 297, 392, 467, 604
Kzo9I GATC 3 cut(s) 136, 239, 590
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 1 cut(s) 102
MaeII ACGT 2 cut(s) 176, 646
MaeIII GTNAC 2 cut(s) 33, 378
MalI GATC 3 cut(s) 138, 241, 592
MboI GATC 3 cut(s) 136, 239, 590
MboII GAAGA 5 cut(s) 83, 257, 293, 512, 569
MflI RGATCY 1 cut(s) 590
MhlI GDGCHC 3 cut(s) 412, 430, 439
MluCI AATT 3 cut(s) 233, 302, 629
MlyI GAGTC 3 cut(s) 12, 86, 386
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 3 cut(s) 58, 67, 568
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 2 cut(s) 305, 649
MwoI GCNNNNNNNGC 4 cut(s) 158, 341, 365, 434
NdeII GATC 3 cut(s) 136, 239, 590
NlaIII CATG 6 cut(s) 50, 112, 297, 392, 467, 604
NlaIV GGNNCC 2 cut(s) 410, 411
NmuCI GTSAC 1 cut(s) 378
NspI RCATGY 3 cut(s) 297, 392, 604
NspV TTCGAA 1 cut(s) 27
PaeI GCATGC 1 cut(s) 604
PagI TCATGA 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 84, 320
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 3 cut(s) 12, 86, 385
PpsI GAGTC 3 cut(s) 12, 86, 385
Psp1406I AACGTT 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 410, 411
PspOMI GGGCCC 1 cut(s) 408
PspPI GGNCC 2 cut(s) 408, 409
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 590
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SaqAI TTAA 2 cut(s) 305, 649
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 3 cut(s) 136, 239, 590
Sau96I GGNCC 2 cut(s) 408, 409
SchI GAGTC 3 cut(s) 12, 86, 386
SduI GDGCHC 3 cut(s) 412, 430, 439
SetI ASST 6 cut(s) 179, 271, 318, 337, 370, 649
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SphI GCATGC 1 cut(s) 604
Sse9I AATT 3 cut(s) 233, 302, 629
SsiI CCGC 1 cut(s) 214
TaiI ACGT 2 cut(s) 179, 649
TaqI TCGA 3 cut(s) 16, 27, 337
TaqII GACCGA 1 cut(s) 96
TasI AATT 3 cut(s) 233, 302, 629
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 2 cut(s) 84, 320
Tru1I TTAA 2 cut(s) 305, 649
Tru9I TTAA 2 cut(s) 305, 649
TscAI CASTG 2 cut(s) 137, 198
TseFI GTSAC 1 cut(s) 378
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 378
TspRI CASTG 2 cut(s) 137, 198
Van91I CCANNNNNTGG 1 cut(s) 52
VneI GTGCAC 1 cut(s) 426
XapI RAATTY 2 cut(s) 233, 629
XceI RCATGY 3 cut(s) 297, 392, 604
XmnI GAANNNNTTC 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.