FvH4_7g34300

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007881
Physical Location & Seq
Forward (+)
24208597 .. 24213557
4961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34300.t1

Sequence Viewer

Length: 1116 bp
ATGGAAGACGCGAAAGCAATGGCTCAACATCAGCAGCAGCAGCAACTACAGTTACAGCAACAACAACACCATCAGCAACACCAGCAGCAGCAGCAGCAACACCAACAACAACAGTTATTGCTTTTACAGCAATTACAAAGACAACAGCAACAGGCGCAACAGGCCGCTGCCATTTCTCGTTTTCCTTCCAACATCGACGCTCATTTGCGCCCACTCCGATCCCTCAATCTCCAACCTAACCAAATCTCGAACCCTAATCCCAACCCCAATCCTAATGCTAATCCCAACCCCAACCCCAACCCCAACCCTAACCCTAACCCCAATTCTGTTCTCCAACAAAATCCGAATGAGAACCCGCAGCAACAGCCTCAACCCCAACAGAGGGCTATCCGTCCGGGTAACCAAGCCGAGCTGCAAATGGCCTACCAGGACGCCTGGCGGGTCTGCCATCCCGATTTCAAGCGCCCCTTCTCTTCCCTCGAAGACGCATGTGAAAGGTTACTACCATATCATGTGGTGGCTGATTATGAAGCTGAAGAGGATGATCGAATCCTTGACTCTGACACTACAGGCATGATGCCGTCTCGCTCTCAGCAGTGGGATCACAACATTTCTGCAAAAGTTGCAGAATTTACGGCGACGTTTGAAAAACAGGCACTGGCCTTCAACATTATCTCCCGCAAGCGTGCTTTTGGGGAATTTAGATCTGAAGAGAGACTTATGATTGAGCAGGCTCTTTGTCAAGAAGAAAAACGAGCATGTCTGGAATTAAGAGCAGAGCTTGATTCTAGAGAGAAAGCTCGAATGGCAGCGATTGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAGACACATGCCGAAATGTTGGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGGCTCAAGGAAATGATGTCCGGATTGGTCATGATATGAGAATACAGGAACATGGGGCTAACCCAGAAGAGATGATAAACGGATGGGGAAATAGTATGCAGAGAGATGAGAAAGAACCATCTGAAGATTTTCTAAATGATGAGGAGACCGAGAATGGATCTCCGGGCATGCAGGATGGTTGGCGCGAAGTTGGTGAATTTGATTTGAACACACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

372

Amino Acids

42.55

Weight (kDa)

5.17

Isoelectric Point (pI)

69.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 144 - 258 5.9e-27 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 11, 1083
AccIII TCCGGA 1 cut(s) 918
AciI CCGC 4 cut(s) 165, 356, 439, 679
AclWI GGATC 3 cut(s) 213, 609, 1063
AcsI RAATTY 3 cut(s) 629, 698, 1094
AcuI CTGAAG 3 cut(s) 555, 729, 1041
AcyI GRCGYC 1 cut(s) 432
AfiI CCNNNNNNNGG 4 cut(s) 381, 382, 882, 883
AflIII ACRYGT 1 cut(s) 1109
AgsI TTSAA 4 cut(s) 460, 647, 667, 1105
AjnI CCWGG 2 cut(s) 426, 434
AluBI AGCT 5 cut(s) 412, 533, 781, 800, 833
AluI AGCT 5 cut(s) 412, 533, 781, 800, 833
Alw21I GWGCWC 1 cut(s) 895
Alw26I GTCTC 3 cut(s) 588, 709, 1037
Alw44I GTGCAC 1 cut(s) 891
AlwI GGATC 3 cut(s) 213, 609, 1063
AlwNI CAGNNNCTG 1 cut(s) 658
Ama87I CYCGRG 2 cut(s) 834, 870
Aor13HI TCCGGA 1 cut(s) 918
AoxI GGCC 4 cut(s) 162, 420, 660, 873
ApaI GGGCCC 1 cut(s) 877
ApaLI GTGCAC 1 cut(s) 891
ApoI RAATTY 3 cut(s) 629, 698, 1094
Asp700I GAANNNNTTC 1 cut(s) 1026
AspLEI GCGC 4 cut(s) 157, 210, 465, 1083
AspS9I GGNCC 2 cut(s) 873, 874
AsuC2I CCSGG 2 cut(s) 396, 1062
AsuHPI GGTGA 1 cut(s) 1103
AvaI CYCGRG 2 cut(s) 834, 870
BaeGI GKGCMC 2 cut(s) 877, 895
BanII GRGCYC 2 cut(s) 877, 904
BbsI GAAGAC 2 cut(s) 12, 489
Bbv12I GWGCWC 1 cut(s) 895
BccI CCATC 5 cut(s) 78, 456, 975, 1024, 1067
BceAI ACGGC 2 cut(s) 565, 651
BciT130I CCWGG 2 cut(s) 428, 436
BcnI CCSGG 2 cut(s) 396, 1062
BcoDI GTCTC 3 cut(s) 588, 709, 1037
BfaI CTAG 1 cut(s) 789
BfmI CTRYAG 2 cut(s) 47, 567
BfoI RGCGCY 1 cut(s) 466
BglII AGATCT 1 cut(s) 704
Bme1390I CCNGG 4 cut(s) 396, 428, 436, 1062
BmeT110I CYCGRG 2 cut(s) 834, 870
BmgT120I GGNCC 2 cut(s) 873, 874
BmiI GGNNCC 2 cut(s) 875, 876
BmrFI CCNGG 4 cut(s) 396, 428, 436, 1062
BmsI GCATC 1 cut(s) 567
BpiI GAAGAC 2 cut(s) 12, 489
BpuEI CTTGAG 1 cut(s) 888
BpuMI CCSGG 2 cut(s) 396, 1062
BsaHI GRCGYC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 1037
BsaWI WCCGGW 1 cut(s) 918
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 4 cut(s) 381, 382, 882, 883
Bse1I ACTGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 918
BseBI CCWGG 2 cut(s) 428, 436
BseGI GGATG 4 cut(s) 448, 547, 986, 1078
BseLI CCNNNNNNNGG 4 cut(s) 381, 382, 882, 883
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 1 cut(s) 1055
BseSI GKGCMC 2 cut(s) 877, 895
Bsh1236I CGCG 2 cut(s) 11, 1083
BshFI GGCC 4 cut(s) 164, 422, 662, 875
BsiHKAI GWGCWC 1 cut(s) 895
BsiHKCI CYCGRG 2 cut(s) 834, 870
BsiSI CCGG 3 cut(s) 395, 919, 1061
BslI CCNNNNNNNGG 4 cut(s) 381, 382, 882, 883
BsmAI GTCTC 3 cut(s) 588, 709, 1037
BsmBI CGTCTC 1 cut(s) 588
BsnI GGCC 4 cut(s) 164, 422, 662, 875
Bso31I GGTCTC 1 cut(s) 1037
BsoBI CYCGRG 2 cut(s) 834, 870
Bsp120I GGGCCC 1 cut(s) 873
Bsp1286I GDGCHC 3 cut(s) 877, 895, 904
Bsp13I TCCGGA 1 cut(s) 918
Bsp143I GATC 5 cut(s) 218, 544, 601, 704, 1055
BspACI CCGC 4 cut(s) 165, 356, 439, 679
BspANI GGCC 4 cut(s) 164, 422, 662, 875
BspCNI CTCAG 1 cut(s) 604
BspEI TCCGGA 1 cut(s) 918
BspFNI CGCG 2 cut(s) 11, 1083
BspHI TCATGA 1 cut(s) 928
BspLI GGNNCC 2 cut(s) 875, 876
BspPI GGATC 3 cut(s) 213, 609, 1063
BspTNI GGTCTC 1 cut(s) 1037
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 663
BssMI GATC 5 cut(s) 218, 544, 601, 704, 1055
BssNI GRCGYC 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 428, 436
Bst4CI ACNGT 2 cut(s) 51, 114
Bst6I CTCTTC 4 cut(s) 478, 531, 705, 960
BstACI GRCGYC 1 cut(s) 432
BstAPI GCANNNNNTGC 1 cut(s) 623
BstC8I GCNNGC 5 cut(s) 683, 687, 732, 831, 1067
BstDEI CTNAG 1 cut(s) 591
BstEII GGTNACC 1 cut(s) 398
BstF5I GGATG 4 cut(s) 448, 547, 986, 1078
BstFNI CGCG 2 cut(s) 11, 1083
BstH2I RGCGCY 1 cut(s) 466
BstHHI GCGC 4 cut(s) 157, 210, 465, 1083
BstKTI GATC 5 cut(s) 221, 547, 604, 707, 1058
BstMAI GTCTC 3 cut(s) 588, 709, 1037
BstMBI GATC 5 cut(s) 218, 544, 601, 704, 1055
BstNI CCWGG 2 cut(s) 428, 436
BstNSI RCATGY 4 cut(s) 492, 762, 857, 1069
BstPI GGTNACC 1 cut(s) 398
BstSCI CCNGG 4 cut(s) 394, 426, 434, 1060
BstSFI CTRYAG 2 cut(s) 47, 567
BstSLI GKGCMC 2 cut(s) 877, 895
BstUI CGCG 2 cut(s) 11, 1083
BstV2I GAAGAC 2 cut(s) 12, 489
BstX2I RGATCY 2 cut(s) 704, 1055
BstYI RGATCY 2 cut(s) 704, 1055
BsuRI GGCC 4 cut(s) 164, 422, 662, 875
BtsCI GGATG 4 cut(s) 448, 547, 986, 1078
BtsI GCAGTG 1 cut(s) 602
BtsIMutI CAGTG 2 cut(s) 602, 656
Cac8I GCNNGC 5 cut(s) 683, 687, 732, 831, 1067
CaiI CAGNNNCTG 1 cut(s) 658
CciI TCATGA 1 cut(s) 928
CfoI GCGC 4 cut(s) 157, 210, 465, 1083
Cfr13I GGNCC 2 cut(s) 873, 874
CseI GACGC 4 cut(s) 17, 206, 440, 494
CviAII CATG 8 cut(s) 489, 512, 574, 759, 854, 929, 950, 1066
DdeI CTNAG 1 cut(s) 591
DpnI GATC 5 cut(s) 220, 546, 603, 706, 1057
DpnII GATC 5 cut(s) 218, 544, 601, 704, 1055
Eam1104I CTCTTC 4 cut(s) 478, 531, 705, 960
EarI CTCTTC 4 cut(s) 478, 531, 705, 960
Eco24I GRGCYC 2 cut(s) 877, 904
Eco31I GGTCTC 1 cut(s) 1037
Eco57I CTGAAG 3 cut(s) 555, 729, 1041
Eco88I CYCGRG 2 cut(s) 834, 870
Eco91I GGTNACC 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 874
EcoO65I GGTNACC 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 426, 434
EcoT38I GRGCYC 2 cut(s) 877, 904
Esp3I CGTCTC 1 cut(s) 588
FaeI CATG 8 cut(s) 492, 515, 577, 762, 857, 932, 953, 1069
FalI AAGNNNNNCTT 4 cut(s) 452, 484, 702, 734
FatI CATG 8 cut(s) 488, 511, 573, 758, 853, 928, 949, 1065
FauI CCCGC 3 cut(s) 363, 432, 686
FokI GGATG 4 cut(s) 435, 554, 993, 1085
FriOI GRGCYC 2 cut(s) 877, 904
FspBI CTAG 1 cut(s) 789
GlaI GCGC 4 cut(s) 156, 209, 464, 1082
HaeII RGCGCY 1 cut(s) 466
HaeIII GGCC 4 cut(s) 164, 422, 662, 875
HapII CCGG 3 cut(s) 395, 919, 1061
HgaI GACGC 4 cut(s) 17, 206, 440, 494
HhaI GCGC 4 cut(s) 157, 210, 465, 1083
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 8 cut(s) 492, 515, 577, 762, 857, 932, 953, 1069
Hin6I GCGC 4 cut(s) 155, 208, 463, 1081
HinP1I GCGC 4 cut(s) 155, 208, 463, 1081
HinfI GANTC 4 cut(s) 549, 557, 785, 842
HpaII CCGG 3 cut(s) 395, 919, 1061
HphI GGTGA 1 cut(s) 1103
Hpy166II GTNNAC 1 cut(s) 893
Hpy188I TCNGA 5 cut(s) 218, 345, 562, 709, 1021
Hpy188III TCNNGA 7 cut(s) 247, 452, 743, 764, 789, 919, 929
Hpy8I GTNNAC 1 cut(s) 893
Hpy99I CGWCG 2 cut(s) 200, 643
HpyAV CCTTC 3 cut(s) 195, 478, 673
HpyCH4III ACNGT 2 cut(s) 51, 114
HpyCH4IV ACGT 2 cut(s) 641, 1111
HpyCH4V TGCA 6 cut(s) 415, 617, 626, 893, 997, 1069
HpyF3I CTNAG 1 cut(s) 591
HpySE526I ACGT 2 cut(s) 641, 1111
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 8 cut(s) 492, 515, 577, 762, 857, 932, 953, 1069
HspAI GCGC 4 cut(s) 155, 208, 463, 1081
Kpn2I TCCGGA 1 cut(s) 918
Kzo9I GATC 5 cut(s) 218, 544, 601, 704, 1055
LweI GCATC 1 cut(s) 567
MaeI CTAG 1 cut(s) 789
MaeII ACGT 2 cut(s) 641, 1111
MaeIII GTNAC 4 cut(s) 51, 398, 498, 843
MalI GATC 5 cut(s) 220, 546, 603, 706, 1057
MboI GATC 5 cut(s) 218, 544, 601, 704, 1055
MboII GAAGA 8 cut(s) 17, 465, 494, 548, 722, 758, 977, 1034
MflI RGATCY 2 cut(s) 704, 1055
MhlI GDGCHC 3 cut(s) 877, 895, 904
MluCI AATT 6 cut(s) 131, 322, 629, 698, 767, 1094
MlyI GAGTC 2 cut(s) 551, 851
MmeI TCCRAC 3 cut(s) 213, 256, 358
MnlI CCTC 6 cut(s) 233, 375, 378, 488, 532, 1033
MroI TCCGGA 1 cut(s) 918
MroXI GAANNNNTTC 1 cut(s) 1026
MseI TTAA 2 cut(s) 770, 1114
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 3 cut(s) 395, 919, 1061
MspR9I CCNGG 4 cut(s) 396, 428, 436, 1062
MvaI CCWGG 2 cut(s) 428, 436
MvnI CGCG 2 cut(s) 11, 1083
NciI CCSGG 2 cut(s) 396, 1062
NdeII GATC 5 cut(s) 218, 544, 601, 704, 1055
NlaIII CATG 8 cut(s) 492, 515, 577, 762, 857, 932, 953, 1069
NlaIV GGNNCC 2 cut(s) 875, 876
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 843
NspI RCATGY 4 cut(s) 492, 762, 857, 1069
PaeI GCATGC 1 cut(s) 1069
PagI TCATGA 1 cut(s) 928
PdmI GAANNNNTTC 1 cut(s) 1026
PfeI GAWTC 2 cut(s) 549, 785
PleI GAGTC 2 cut(s) 551, 850
PpsI GAGTC 2 cut(s) 551, 850
Psp6I CCWGG 2 cut(s) 426, 434
PspEI GGTNACC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 426, 434
PspN4I GGNNCC 2 cut(s) 875, 876
PspOMI GGGCCC 1 cut(s) 873
PspPI GGNCC 2 cut(s) 873, 874
PstNI CAGNNNCTG 1 cut(s) 658
PsuI RGATCY 2 cut(s) 704, 1055
SaqAI TTAA 2 cut(s) 770, 1114
Sau3AI GATC 5 cut(s) 218, 544, 601, 704, 1055
Sau96I GGNCC 2 cut(s) 873, 874
SchI GAGTC 2 cut(s) 551, 851
ScrFI CCNGG 4 cut(s) 396, 428, 436, 1062
SduI GDGCHC 3 cut(s) 877, 895, 904
SetI ASST 9 cut(s) 238, 414, 500, 535, 644, 783, 802, 835, 1114
SfaNI GCATC 1 cut(s) 567
SfcI CTRYAG 2 cut(s) 47, 567
SmlI CTYRAG 1 cut(s) 903
SmoI CTYRAG 1 cut(s) 903
SphI GCATGC 1 cut(s) 1069
Sse9I AATT 6 cut(s) 131, 322, 629, 698, 767, 1094
SsiI CCGC 4 cut(s) 165, 356, 439, 679
SspMI CTAG 1 cut(s) 789
StyD4I CCNGG 4 cut(s) 394, 426, 434, 1060
TaaI ACNGT 2 cut(s) 51, 114
TaiI ACGT 2 cut(s) 644, 1114
TaqI TCGA 5 cut(s) 195, 248, 480, 547, 802
TaqII GACCGA 1 cut(s) 1061
TasI AATT 6 cut(s) 131, 322, 629, 698, 767, 1094
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 2 cut(s) 549, 785
Tru1I TTAA 2 cut(s) 770, 1114
Tru9I TTAA 2 cut(s) 770, 1114
TscAI CASTG 2 cut(s) 602, 663
TseFI GTSAC 1 cut(s) 843
Tsp45I GTSAC 1 cut(s) 843
TspDTI ATGAA 1 cut(s) 543
TspGWI ACGGA 2 cut(s) 380, 993
TspRI CASTG 2 cut(s) 602, 663
VneI GTGCAC 1 cut(s) 891
XapI RAATTY 3 cut(s) 629, 698, 1094
XbaI TCTAGA 1 cut(s) 788
XceI RCATGY 4 cut(s) 492, 762, 857, 1069
XmnI GAANNNNTTC 1 cut(s) 1026
XspI CTAG 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.