Rw1G039730

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007881
Physical Location & Seq
Reverse (-)
67298349 .. 67303391
5043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039730.1

Sequence Viewer

Length: 1143 bp
ATGGAAGAAGCGAAAGCAATGGCTCAACATCAGCAGCAGCAGCAGCAGCTATTGTTACAGCAGCAACAACAGCATCAGCAACAGCAGCAGCAGCAACATCAGCAACAGCATCAGCAGCAACAACAACAACAACAACAGTTATTACTTTTACATCAATTACAAAGACAACAGCAACAGGCGCAACAGGCCGCTGCCATTTCTCGTTTCCCTTCCAACATCGATGCTCACTTGCGCCCACTCCGAGCCCTCAATCTCCAACCTAACCAAATCTCCAACCCCAACCCTAACCCTAACCCTACCCCCAACCCCAACCCTAACCCCAACCCTAACCCCAATTCTGTTCTTCCCAATCTCCAACAAAATCCTAATGAGAACCCGCAGCAACAGCCCCAACAGCAGCAGCAACAGAGGGCGATCCGTCCGGGTAACCAGGCCGAGCTGCAAATGGCGTACCAGGACGCCTGGCGGGTCTGCCATCCGGATTTCAAGCGTCCCTTCTCTTCTCTCGAAGACGCATGTGAAAGGTTACTGCCTTACCATGTGGTGGCAGATTATGAGGCTGAAGAGGATGACCGAATCCTTGACTCTGACACTACAGGCATGATGCCATCTCGCTCTCAGCAGTGGGATCACAACATTTCTGCAAAAGTTGCTGAGTTTACAGCAACGTTTGAGAAACAGGCACTGGCCTTCAACATTATCTCCCGCAAGCGTGCTTTTGGGGAATTTAGATCAGAAGAGAGACTTATGATTGAGCAAGCTCTTTGCCAAGAAGAAAAACGAGCATGTCTGGAATTAAGAGCAGAGCTTGATTCAAGAGAAAAAGCTCGAATGGCAGCGATTGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAACACATGCCGAAATGTTGGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGGCTCAAGGCAATGATGTCCCGATTGGTCATGATATGAGAGTACAGGAACACGGGGCTAACCCAGAAGAGATGATAAATGGATGGGGAAATAGTATGCAAAGAGATGAGAAAGAACCATCTGAAGATTTTCTAAATGACGAGGAGACTGAGAATGGATCTACTGGCATGCAGGATGGCTGGCGTGAAGTTGGAGAATTTGATTTGAACACACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

380

Amino Acids

43.69

Weight (kDa)

5.12

Isoelectric Point (pI)

70.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 153 - 267 6.2e-27 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 544
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 4 cut(s) 189, 377, 466, 706
AclI AACGTT 1 cut(s) 668
AclWI GGATC 3 cut(s) 409, 636, 1090
AcsI RAATTY 2 cut(s) 725, 1121
AcuI CTGAAG 2 cut(s) 582, 1068
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 2 cut(s) 452, 969
AfiI CCNNNNNNNGG 3 cut(s) 544, 909, 910
AflIII ACRYGT 1 cut(s) 1136
AgsI TTSAA 4 cut(s) 487, 694, 816, 1132
AjnI CCWGG 3 cut(s) 429, 453, 461
AluBI AGCT 6 cut(s) 49, 439, 761, 808, 827, 860
AluI AGCT 6 cut(s) 49, 439, 761, 808, 827, 860
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 2 cut(s) 736, 1064
Alw44I GTGCAC 1 cut(s) 918
AlwI GGATC 3 cut(s) 409, 636, 1090
AlwNI CAGNNNCTG 1 cut(s) 685
Ama87I CYCGRG 2 cut(s) 861, 897
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 4 cut(s) 186, 432, 687, 900
ApaI GGGCCC 1 cut(s) 904
ApaLI GTGCAC 1 cut(s) 918
ApoI RAATTY 2 cut(s) 725, 1121
Asp700I GAANNNNTTC 1 cut(s) 1053
AspLEI GCGC 2 cut(s) 181, 234
AspS9I GGNCC 2 cut(s) 900, 901
AsuC2I CCSGG 1 cut(s) 423
AvaI CYCGRG 2 cut(s) 861, 897
BaeGI GKGCMC 2 cut(s) 904, 922
BanII GRGCYC 3 cut(s) 247, 904, 931
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 922
BccI CCATC 5 cut(s) 483, 616, 1002, 1051, 1094
BciT130I CCWGG 3 cut(s) 431, 455, 463
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 736, 1064
BfmI CTRYAG 1 cut(s) 594
Bme1390I CCNGG 4 cut(s) 423, 431, 455, 463
BmeT110I CYCGRG 2 cut(s) 861, 897
BmgT120I GGNCC 2 cut(s) 900, 901
BmiI GGNNCC 2 cut(s) 902, 903
BmrFI CCNGG 4 cut(s) 423, 431, 455, 463
BmsI GCATC 4 cut(s) 82, 118, 211, 594
BpiI GAAGAC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 915
BpuMI CCSGG 1 cut(s) 423
Bsa29I ATCGAT 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 459
BsaWI WCCGGW 1 cut(s) 478
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 686, 716
Bsc4I CCNNNNNNNGG 3 cut(s) 544, 909, 910
Bse1I ACTGG 2 cut(s) 690, 1093
Bse3DI GCAATG 2 cut(s) 24, 943
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 3 cut(s) 431, 455, 463
BseCI ATCGAT 1 cut(s) 219
BseGI GGATG 4 cut(s) 475, 574, 1013, 1105
BseLI CCNNNNNNNGG 3 cut(s) 544, 909, 910
BseMI GCAATG 2 cut(s) 24, 943
BseMII CTCAG 3 cut(s) 632, 645, 1065
BseNI ACTGG 2 cut(s) 690, 1093
BseRI GAGGAG 1 cut(s) 1082
BseSI GKGCMC 2 cut(s) 904, 922
BshFI GGCC 4 cut(s) 188, 434, 689, 902
BshVI ATCGAT 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 922
BsiHKCI CYCGRG 2 cut(s) 861, 897
BsiSI CCGG 2 cut(s) 422, 479
BslFI GGGAC 2 cut(s) 477, 929
BslI CCNNNNNNNGG 3 cut(s) 544, 909, 910
BsmAI GTCTC 2 cut(s) 736, 1064
BsmFI GGGAC 2 cut(s) 477, 929
BsnI GGCC 4 cut(s) 188, 434, 689, 902
BsoBI CYCGRG 2 cut(s) 861, 897
Bsp120I GGGCCC 1 cut(s) 900
Bsp1286I GDGCHC 4 cut(s) 247, 904, 922, 931
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 4 cut(s) 414, 628, 731, 1082
BspACI CCGC 4 cut(s) 189, 377, 466, 706
BspANI GGCC 4 cut(s) 188, 434, 689, 902
BspCNI CTCAG 3 cut(s) 631, 646, 1066
BspDI ATCGAT 1 cut(s) 219
BspEI TCCGGA 1 cut(s) 478
BspHI TCATGA 1 cut(s) 955
BspLI GGNNCC 2 cut(s) 902, 903
BspPI GGATC 3 cut(s) 409, 636, 1090
BsrDI GCAATG 2 cut(s) 24, 943
BsrI ACTGG 2 cut(s) 690, 1093
BssMI GATC 4 cut(s) 414, 628, 731, 1082
BssNI GRCGYC 1 cut(s) 459
Bst2UI CCWGG 3 cut(s) 431, 455, 463
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 4 cut(s) 505, 558, 732, 987
BstACI GRCGYC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 650
BstC8I GCNNGC 6 cut(s) 710, 714, 759, 858, 1094, 1106
BstDEI CTNAG 3 cut(s) 618, 654, 1074
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 4 cut(s) 475, 574, 1013, 1105
BstHHI GCGC 2 cut(s) 181, 234
BstKTI GATC 4 cut(s) 417, 631, 734, 1085
BstMAI GTCTC 2 cut(s) 736, 1064
BstMBI GATC 4 cut(s) 414, 628, 731, 1082
BstNI CCWGG 3 cut(s) 431, 455, 463
BstNSI RCATGY 4 cut(s) 519, 789, 884, 1096
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 4 cut(s) 421, 429, 453, 461
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 2 cut(s) 904, 922
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 1082
BstYI RGATCY 1 cut(s) 1082
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 4 cut(s) 188, 434, 689, 902
BsuTUI ATCGAT 1 cut(s) 219
BtsCI GGATG 4 cut(s) 475, 574, 1013, 1105
BtsI GCAGTG 1 cut(s) 629
BtsIMutI CAGTG 2 cut(s) 629, 683
Cac8I GCNNGC 6 cut(s) 710, 714, 759, 858, 1094, 1106
CaiI CAGNNNCTG 1 cut(s) 685
CciI TCATGA 1 cut(s) 955
CfoI GCGC 2 cut(s) 181, 234
Cfr13I GGNCC 2 cut(s) 900, 901
ClaI ATCGAT 1 cut(s) 219
CseI GACGC 3 cut(s) 467, 479, 521
Csp6I GTAC 2 cut(s) 451, 968
CviAII CATG 7 cut(s) 516, 539, 601, 786, 881, 956, 1093
CviQI GTAC 2 cut(s) 451, 968
DdeI CTNAG 3 cut(s) 618, 654, 1074
DpnI GATC 4 cut(s) 416, 630, 733, 1084
DpnII GATC 4 cut(s) 414, 628, 731, 1082
Eam1104I CTCTTC 4 cut(s) 505, 558, 732, 987
EarI CTCTTC 4 cut(s) 505, 558, 732, 987
Eco24I GRGCYC 3 cut(s) 247, 904, 931
Eco57I CTGAAG 2 cut(s) 582, 1068
Eco88I CYCGRG 2 cut(s) 861, 897
Eco91I GGTNACC 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 901
EcoO65I GGTNACC 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 429, 453, 461
EcoT38I GRGCYC 3 cut(s) 247, 904, 931
FaeI CATG 7 cut(s) 519, 542, 604, 789, 884, 959, 1096
FalI AAGNNNNNCTT 4 cut(s) 479, 511, 729, 761
FaqI GGGAC 2 cut(s) 477, 929
FatI CATG 7 cut(s) 515, 538, 600, 785, 880, 955, 1092
FauI CCCGC 3 cut(s) 384, 459, 713
FokI GGATG 4 cut(s) 462, 581, 1020, 1112
FriOI GRGCYC 3 cut(s) 247, 904, 931
GlaI GCGC 2 cut(s) 180, 233
HaeIII GGCC 4 cut(s) 188, 434, 689, 902
HapII CCGG 2 cut(s) 422, 479
HgaI GACGC 3 cut(s) 467, 479, 521
HhaI GCGC 2 cut(s) 181, 234
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 7 cut(s) 519, 542, 604, 789, 884, 959, 1096
Hin6I GCGC 2 cut(s) 179, 232
HinP1I GCGC 2 cut(s) 179, 232
HinfI GANTC 4 cut(s) 576, 584, 812, 869
HpaII CCGG 2 cut(s) 422, 479
Hpy166II GTNNAC 2 cut(s) 660, 920
Hpy188I TCNGA 4 cut(s) 242, 589, 736, 1048
Hpy188III TCNNGA 6 cut(s) 479, 506, 791, 816, 946, 956
Hpy8I GTNNAC 2 cut(s) 660, 920
HpyAV CCTTC 3 cut(s) 219, 505, 700
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 2 cut(s) 668, 1138
HpyCH4V TGCA 5 cut(s) 442, 644, 920, 1024, 1096
HpyF3I CTNAG 3 cut(s) 618, 654, 1074
HpySE526I ACGT 2 cut(s) 668, 1138
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 7 cut(s) 519, 542, 604, 789, 884, 959, 1096
HspAI GCGC 2 cut(s) 179, 232
Kpn2I TCCGGA 1 cut(s) 478
Kzo9I GATC 4 cut(s) 414, 628, 731, 1082
LweI GCATC 4 cut(s) 82, 118, 211, 594
MaeII ACGT 2 cut(s) 668, 1138
MaeIII GTNAC 4 cut(s) 54, 425, 525, 870
MalI GATC 4 cut(s) 416, 630, 733, 1084
MboI GATC 4 cut(s) 414, 628, 731, 1082
MboII GAAGA 9 cut(s) 17, 335, 492, 521, 575, 749, 785, 1004, 1061
MflI RGATCY 1 cut(s) 1082
MhlI GDGCHC 4 cut(s) 247, 904, 922, 931
MluCI AATT 5 cut(s) 155, 334, 725, 794, 1121
MlyI GAGTC 2 cut(s) 578, 878
MmeI TCCRAC 5 cut(s) 237, 280, 297, 379, 1096
MnlI CCTC 5 cut(s) 257, 402, 550, 559, 1060
MroI TCCGGA 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 1053
MseI TTAA 2 cut(s) 797, 1141
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 422, 479
MspR9I CCNGG 4 cut(s) 423, 431, 455, 463
MvaI CCWGG 3 cut(s) 431, 455, 463
NciI CCSGG 1 cut(s) 423
NdeII GATC 4 cut(s) 414, 628, 731, 1082
NlaIII CATG 7 cut(s) 519, 542, 604, 789, 884, 959, 1096
NlaIV GGNNCC 2 cut(s) 902, 903
NmeAIII GCCGAG 1 cut(s) 460
NmuCI GTSAC 1 cut(s) 870
NspI RCATGY 4 cut(s) 519, 789, 884, 1096
PaeI GCATGC 1 cut(s) 1096
PagI TCATGA 1 cut(s) 955
PdmI GAANNNNTTC 1 cut(s) 1053
PfeI GAWTC 2 cut(s) 576, 812
PflMI CCANNNNNTGG 1 cut(s) 544
PleI GAGTC 2 cut(s) 578, 877
PpsI GAGTC 2 cut(s) 578, 877
Psp1406I AACGTT 1 cut(s) 668
Psp6I CCWGG 3 cut(s) 429, 453, 461
PspEI GGTNACC 1 cut(s) 425
PspGI CCWGG 3 cut(s) 429, 453, 461
PspN4I GGNNCC 2 cut(s) 902, 903
PspOMI GGGCCC 1 cut(s) 900
PspPI GGNCC 2 cut(s) 900, 901
PstNI CAGNNNCTG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 1082
RsaI GTAC 2 cut(s) 452, 969
RsaNI GTAC 2 cut(s) 451, 968
SaqAI TTAA 2 cut(s) 797, 1141
Sau3AI GATC 4 cut(s) 414, 628, 731, 1082
Sau96I GGNCC 2 cut(s) 900, 901
SchI GAGTC 2 cut(s) 578, 878
ScrFI CCNGG 4 cut(s) 423, 431, 455, 463
SduI GDGCHC 4 cut(s) 247, 904, 922, 931
SfaNI GCATC 4 cut(s) 82, 118, 211, 594
SfcI CTRYAG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 930
SmoI CTYRAG 1 cut(s) 930
SphI GCATGC 1 cut(s) 1096
Sse9I AATT 5 cut(s) 155, 334, 725, 794, 1121
SsiI CCGC 4 cut(s) 189, 377, 466, 706
StyD4I CCNGG 4 cut(s) 421, 429, 453, 461
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 2 cut(s) 671, 1141
TaqI TCGA 3 cut(s) 219, 507, 829
TaqII GACCGA 1 cut(s) 588
TasI AATT 5 cut(s) 155, 334, 725, 794, 1121
TatI WGTACW 1 cut(s) 967
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 2 cut(s) 576, 812
Tru1I TTAA 2 cut(s) 797, 1141
Tru9I TTAA 2 cut(s) 797, 1141
TscAI CASTG 2 cut(s) 629, 690
TseFI GTSAC 1 cut(s) 870
Tsp45I GTSAC 1 cut(s) 870
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 2 cut(s) 629, 690
Van91I CCANNNNNTGG 1 cut(s) 544
VneI GTGCAC 1 cut(s) 918
XapI RAATTY 2 cut(s) 725, 1121
XceI RCATGY 4 cut(s) 519, 789, 884, 1096
XmnI GAANNNNTTC 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.