Rh1AG475300

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0007881
Physical Location & Seq
Forward (+)
68598156 .. 68602251
4096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG475300.1

Sequence Viewer

Length: 699 bp
ATGGCGTACCAGGACGCCTGGCGGGTCTGCCATCCGGATTTCAAGCGTCCCTTCTCTTCTCTAGAAGACGCATGTGAAAGGTTACTGCCTTACCATGTGGTGGCAGATTATGAGGCTGAAGAGGATGACCGAATCCTTGACTCTGACACTACAGGCATGATGCCATCTCGCTCTCAGCAGTGGGATCACAACATTTCTGCAAAAGTTGCTGAGTTTACAGCAACGTTTGAGAAACAGGCACTGGCCTTCAACATTATCTCCCGCAAGCGTGCTTTTGGGGAATTTAGATCAGAAGAGAGACTTATGATTGAGCAGGCTCTTTGCCAAGAAGAAAAACGAGCATGTCTGGAATTAAGAGCAGAGCTTGATTCAAGAGAAAAAGCTCGAATGGCAGCGATTGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAACACATGCCGAAATGTTGGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGGCTCAAGGCAATGATGTCCCGATTGGTCATGATATGAGAGTACAGGAACACGGGGCTAACCCAGAAGAGATGATAAATGGATGGGGAAATAGTATGCAAAGAGATGAGAAAGAACCATCTGAAGATTTTCTAAATGACGAGGAGACTGAGAATGGATCTACTGGCATGCAGGATGGCTGGCGTGAAGTTGGAGAATTTGATTTGAACACACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

232

Amino Acids

26.5

Weight (kDa)

4.69

Isoelectric Point (pI)

59.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 5 - 119 2e-27 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 2 cut(s) 22, 262
AclI AACGTT 1 cut(s) 224
AclWI GGATC 2 cut(s) 192, 646
AcsI RAATTY 2 cut(s) 281, 677
AcuI CTGAAG 2 cut(s) 138, 624
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 8, 525
AfiI CCNNNNNNNGG 3 cut(s) 100, 465, 466
AflIII ACRYGT 1 cut(s) 692
AgsI TTSAA 4 cut(s) 43, 250, 372, 688
AjnI CCWGG 2 cut(s) 9, 17
AluBI AGCT 3 cut(s) 364, 383, 416
AluI AGCT 3 cut(s) 364, 383, 416
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 2 cut(s) 292, 620
Alw44I GTGCAC 1 cut(s) 474
AlwI GGATC 2 cut(s) 192, 646
AlwNI CAGNNNCTG 1 cut(s) 241
Ama87I CYCGRG 2 cut(s) 417, 453
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 2 cut(s) 243, 456
ApaI GGGCCC 1 cut(s) 460
ApaLI GTGCAC 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 2 cut(s) 281, 677
Asp700I GAANNNNTTC 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 456, 457
AvaI CYCGRG 2 cut(s) 417, 453
BaeGI GKGCMC 2 cut(s) 460, 478
BanII GRGCYC 2 cut(s) 460, 487
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 1 cut(s) 404
BccI CCATC 5 cut(s) 39, 172, 558, 607, 650
BciT130I CCWGG 2 cut(s) 11, 19
BcoDI GTCTC 2 cut(s) 292, 620
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 11, 19
BmeT110I CYCGRG 2 cut(s) 417, 453
BmgT120I GGNCC 2 cut(s) 456, 457
BmiI GGNNCC 2 cut(s) 458, 459
BmrFI CCNGG 2 cut(s) 11, 19
BmsI GCATC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 465, 466
Bse1I ACTGG 2 cut(s) 246, 649
Bse3DI GCAATG 1 cut(s) 499
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 2 cut(s) 11, 19
BseGI GGATG 4 cut(s) 31, 130, 569, 661
BseLI CCNNNNNNNGG 3 cut(s) 100, 465, 466
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 3 cut(s) 188, 201, 621
BseNI ACTGG 2 cut(s) 246, 649
BseRI GAGGAG 1 cut(s) 638
BseSI GKGCMC 2 cut(s) 460, 478
BseXI GCAGC 1 cut(s) 404
BshFI GGCC 2 cut(s) 245, 458
BsiHKAI GWGCWC 1 cut(s) 478
BsiHKCI CYCGRG 2 cut(s) 417, 453
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 2 cut(s) 33, 485
BslI CCNNNNNNNGG 3 cut(s) 100, 465, 466
BsmAI GTCTC 2 cut(s) 292, 620
BsmFI GGGAC 2 cut(s) 33, 485
BsnI GGCC 2 cut(s) 245, 458
BsoBI CYCGRG 2 cut(s) 417, 453
Bsp120I GGGCCC 1 cut(s) 456
Bsp1286I GDGCHC 3 cut(s) 460, 478, 487
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 3 cut(s) 184, 287, 638
BspACI CCGC 2 cut(s) 22, 262
BspANI GGCC 2 cut(s) 245, 458
BspCNI CTCAG 3 cut(s) 187, 202, 622
BspEI TCCGGA 1 cut(s) 34
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 458, 459
BspPI GGATC 2 cut(s) 192, 646
BsrDI GCAATG 1 cut(s) 499
BsrI ACTGG 2 cut(s) 246, 649
BssMI GATC 3 cut(s) 184, 287, 638
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 11, 19
Bst6I CTCTTC 4 cut(s) 61, 114, 288, 543
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 6 cut(s) 266, 270, 315, 414, 650, 662
BstDEI CTNAG 3 cut(s) 174, 210, 630
BstF5I GGATG 4 cut(s) 31, 130, 569, 661
BstKTI GATC 3 cut(s) 187, 290, 641
BstMAI GTCTC 2 cut(s) 292, 620
BstMBI GATC 3 cut(s) 184, 287, 638
BstMWI GCNNNNNNNGC 4 cut(s) 206, 389, 413, 482
BstNI CCWGG 2 cut(s) 11, 19
BstNSI RCATGY 4 cut(s) 75, 345, 440, 652
BstSCI CCNGG 2 cut(s) 9, 17
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 2 cut(s) 460, 478
BstV1I GCAGC 1 cut(s) 404
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
BsuRI GGCC 2 cut(s) 245, 458
BtsCI GGATG 4 cut(s) 31, 130, 569, 661
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 2 cut(s) 185, 239
Cac8I GCNNGC 6 cut(s) 266, 270, 315, 414, 650, 662
CaiI CAGNNNCTG 1 cut(s) 241
CciI TCATGA 1 cut(s) 511
Cfr13I GGNCC 2 cut(s) 456, 457
CseI GACGC 3 cut(s) 23, 35, 77
Csp6I GTAC 2 cut(s) 7, 524
CviAII CATG 7 cut(s) 72, 95, 157, 342, 437, 512, 649
CviQI GTAC 2 cut(s) 7, 524
DdeI CTNAG 3 cut(s) 174, 210, 630
DpnI GATC 3 cut(s) 186, 289, 640
DpnII GATC 3 cut(s) 184, 287, 638
Eam1104I CTCTTC 4 cut(s) 61, 114, 288, 543
EarI CTCTTC 4 cut(s) 61, 114, 288, 543
Eco24I GRGCYC 2 cut(s) 460, 487
Eco57I CTGAAG 2 cut(s) 138, 624
Eco88I CYCGRG 2 cut(s) 417, 453
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 9, 17
EcoT38I GRGCYC 2 cut(s) 460, 487
FaeI CATG 7 cut(s) 75, 98, 160, 345, 440, 515, 652
FalI AAGNNNNNCTT 4 cut(s) 35, 67, 285, 317
FaqI GGGAC 2 cut(s) 33, 485
FatI CATG 7 cut(s) 71, 94, 156, 341, 436, 511, 648
FauI CCCGC 2 cut(s) 15, 269
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 4 cut(s) 18, 137, 576, 668
FriOI GRGCYC 2 cut(s) 460, 487
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 1 cut(s) 62
GluI GCNGC 1 cut(s) 393
HaeIII GGCC 2 cut(s) 245, 458
HapII CCGG 1 cut(s) 35
HgaI GACGC 3 cut(s) 23, 35, 77
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 7 cut(s) 75, 98, 160, 345, 440, 515, 652
HinfI GANTC 4 cut(s) 132, 140, 368, 425
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 216, 476
Hpy188I TCNGA 3 cut(s) 145, 292, 604
Hpy188III TCNNGA 6 cut(s) 35, 62, 347, 372, 502, 512
Hpy8I GTNNAC 2 cut(s) 216, 476
HpyAV CCTTC 2 cut(s) 61, 256
HpyCH4IV ACGT 2 cut(s) 224, 694
HpyCH4V TGCA 4 cut(s) 200, 476, 580, 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 389, 413, 482
HpyF3I CTNAG 3 cut(s) 174, 210, 630
HpySE526I ACGT 2 cut(s) 224, 694
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 7 cut(s) 75, 98, 160, 345, 440, 515, 652
Kpn2I TCCGGA 1 cut(s) 34
Kzo9I GATC 3 cut(s) 184, 287, 638
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 62
MaeII ACGT 2 cut(s) 224, 694
MaeIII GTNAC 2 cut(s) 81, 426
MalI GATC 3 cut(s) 186, 289, 640
MboI GATC 3 cut(s) 184, 287, 638
MboII GAAGA 7 cut(s) 48, 77, 131, 305, 341, 560, 617
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 3 cut(s) 460, 478, 487
MluCI AATT 3 cut(s) 281, 350, 677
MlyI GAGTC 2 cut(s) 134, 434
MmeI TCCRAC 1 cut(s) 652
MnlI CCTC 3 cut(s) 106, 115, 616
MroI TCCGGA 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 2 cut(s) 353, 697
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 11, 19
MvaI CCWGG 2 cut(s) 11, 19
MwoI GCNNNNNNNGC 4 cut(s) 206, 389, 413, 482
NdeII GATC 3 cut(s) 184, 287, 638
NlaIII CATG 7 cut(s) 75, 98, 160, 345, 440, 515, 652
NlaIV GGNNCC 2 cut(s) 458, 459
NmuCI GTSAC 1 cut(s) 426
NspI RCATGY 4 cut(s) 75, 345, 440, 652
PaeI GCATGC 1 cut(s) 652
PagI TCATGA 1 cut(s) 511
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 132, 368
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 2 cut(s) 134, 433
PpsI GAGTC 2 cut(s) 134, 433
Psp1406I AACGTT 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 9, 17
PspGI CCWGG 2 cut(s) 9, 17
PspN4I GGNNCC 2 cut(s) 458, 459
PspOMI GGGCCC 1 cut(s) 456
PspPI GGNCC 2 cut(s) 456, 457
PstNI CAGNNNCTG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 638
RsaI GTAC 2 cut(s) 8, 525
RsaNI GTAC 2 cut(s) 7, 524
SaqAI TTAA 2 cut(s) 353, 697
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 3 cut(s) 184, 287, 638
Sau96I GGNCC 2 cut(s) 456, 457
SchI GAGTC 2 cut(s) 134, 434
ScrFI CCNGG 2 cut(s) 11, 19
SduI GDGCHC 3 cut(s) 460, 478, 487
SetI ASST 6 cut(s) 83, 227, 366, 385, 418, 697
SfaNI GCATC 1 cut(s) 150
SfcI CTRYAG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
SphI GCATGC 1 cut(s) 652
Sse9I AATT 3 cut(s) 281, 350, 677
SsiI CCGC 2 cut(s) 22, 262
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 9, 17
TaiI ACGT 2 cut(s) 227, 697
TaqI TCGA 1 cut(s) 385
TaqII GACCGA 1 cut(s) 144
TasI AATT 3 cut(s) 281, 350, 677
TatI WGTACW 1 cut(s) 523
TfiI GAWTC 2 cut(s) 132, 368
Tru1I TTAA 2 cut(s) 353, 697
Tru9I TTAA 2 cut(s) 353, 697
TscAI CASTG 2 cut(s) 185, 246
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 426
TspRI CASTG 2 cut(s) 185, 246
Van91I CCANNNNNTGG 1 cut(s) 100
VneI GTGCAC 1 cut(s) 474
XapI RAATTY 2 cut(s) 281, 677
XbaI TCTAGA 1 cut(s) 61
XceI RCATGY 4 cut(s) 75, 345, 440, 652
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.