Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007881

Physical Location & Seq

Genomic Coordinates Reverse (-)

1545901 .. 1546296

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG009800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATTGAGCAGGCTCTTTGCCAAGAAGAAAAACGAGCATGTCTGGAATTAAGAGCAGAGCTTGATTCAAGAGAAAAAGCTCGAATGGCAGCGATTGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAACACATGCCGAAATGTTGGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGGCTCAAGGCAATGATGTCCCGATTGGTCATGATATGAGAGTACAGGAACACGGGGCTAACCCAGAAGAGATGATAAATGGATGGGGAAATAGTATGCAAAGAGATGAGAAAGAACCATCTGAAGATTTTCTAAATGACGAGGAGACTGAGAATGGATCTACTGGCATGCAGGATGGCTGGCGTGAAGTTGGAGAATTTGATTTGAACACACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTSCR1

Protein Analysis

131

Amino Acids

14.7

Weight (kDa)

4.53

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17510 AT5G17510
fragaria_vesca	FvH4_7g34300 FvH4_7g34300
malus_domestica	MD01G1239600.v1.1
prunus_persica	Prupe.2G329500_v2.0.a1
pyrus_communis	pycom07g28390
rosa_chinensis	RchiOBHm_Chr1g0384691
rosa_laevigata	RLG00000026015
rosa_multiflora	Rmu_sc0003829.1_g000048 Rmu_sc0003829.1_g000049 Rmu_sc0014575.1_g000001 Rmu_sc0014575.1_g000002 Rmu_sc0032400.1_g000001 Rmu_sc0032400.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276450 Rroxscaffold_7G00217990
rosa_rugosa	Rorug01G0450800
rosa_samantha	Rh1AG475300 Rh1BG433500 Rh1CG447000 Rh1DG466000 Rh6BG009800
rosa_wichuraiana	Rw1G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	162, 163
AflIII	ACRYGT	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	69, 385
AluBI	AGCT	3 cut(s)	61, 80, 113
AluI	AGCT	3 cut(s)	61, 80, 113
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	317
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	343
Ama87I	CYCGRG	2 cut(s)	114, 150
AoxI	GGCC	1 cut(s)	153
ApaI	GGGCCC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	153, 154
AvaI	CYCGRG	2 cut(s)	114, 150
BaeGI	GKGCMC	2 cut(s)	157, 175
BanII	GRGCYC	2 cut(s)	157, 184
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	3 cut(s)	255, 304, 347
BcoDI	GTCTC	1 cut(s)	317
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmeT110I	CYCGRG	2 cut(s)	114, 150
BmgT120I	GGNCC	2 cut(s)	153, 154
BmiI	GGNNCC	2 cut(s)	155, 156
BpuEI	CTTGAG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 163
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	266, 358
BseLI	CCNNNNNNNGG	2 cut(s)	162, 163
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	2 cut(s)	157, 175
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	2 cut(s)	114, 150
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	162, 163
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	2 cut(s)	114, 150
Bsp120I	GGGCCC	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	157, 175, 184
Bsp143I	GATC	1 cut(s)	335
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	155, 156
BspPI	GGATC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	346
BssMI	GATC	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	4 cut(s)	12, 111, 347, 359
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	266, 358
BstKTI	GATC	1 cut(s)	338
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 110, 179
BstNSI	RCATGY	3 cut(s)	42, 137, 349
BstSLI	GKGCMC	2 cut(s)	157, 175
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	266, 358
Cac8I	GCNNGC	4 cut(s)	12, 111, 347, 359
CciI	TCATGA	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	153, 154
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	4 cut(s)	39, 134, 209, 346
CviJI	RGCY	9 cut(s)	14, 61, 80, 113, 149, 155, 182, 236, 357
CviKI_1	RGCY	9 cut(s)	14, 61, 80, 113, 149, 155, 182, 236, 357
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	1 cut(s)	337
DpnII	GATC	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	157, 184
Eco57I	CTGAAG	1 cut(s)	321
Eco88I	CYCGRG	2 cut(s)	114, 150
EcoO109I	RGGNCCY	1 cut(s)	154
EcoT38I	GRGCYC	2 cut(s)	157, 184
FaeI	CATG	4 cut(s)	42, 137, 212, 349
FaiI	YATR	6 cut(s)	40, 135, 210, 215, 275, 347
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	4 cut(s)	38, 133, 208, 345
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	273, 365
FriOI	GRGCYC	2 cut(s)	157, 184
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	42, 137, 212, 349
HinfI	GANTC	2 cut(s)	65, 122
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	44, 69, 199, 209
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	3 cut(s)	173, 277, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 110, 179
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	4 cut(s)	42, 137, 212, 349
Kzo9I	GATC	1 cut(s)	335
LpnPI	CCDG	7 cut(s)	29, 86, 209, 255, 327, 335, 343
Lsp1109I	GCAGC	1 cut(s)	101
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	1 cut(s)	337
MboI	GATC	1 cut(s)	335
MboII	GAAGA	3 cut(s)	38, 257, 314
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	3 cut(s)	157, 175, 184
MluCI	AATT	2 cut(s)	47, 374
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	2 cut(s)	50, 394
MwoI	GCNNNNNNNGC	3 cut(s)	86, 110, 179
NdeII	GATC	1 cut(s)	335
NlaIII	CATG	4 cut(s)	42, 137, 212, 349
NlaIV	GGNNCC	2 cut(s)	155, 156
NmuCI	GTSAC	1 cut(s)	123
NspI	RCATGY	3 cut(s)	42, 137, 349
PaeI	GCATGC	1 cut(s)	349
PagI	TCATGA	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	155, 156
PspOMI	GGGCCC	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	153, 154
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	50, 394
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	335
Sau96I	GGNCC	2 cut(s)	153, 154
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	3 cut(s)	157, 175, 184
SetI	ASST	4 cut(s)	63, 82, 115, 394
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
SphI	GCATGC	1 cut(s)	349
Sse9I	AATT	2 cut(s)	47, 374
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	47, 374
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	50, 394
Tru9I	TTAA	2 cut(s)	50, 394
TseFI	GTSAC	1 cut(s)	123
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	123
VneI	GTGCAC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	3 cut(s)	42, 137, 349
XmnI	GAANNNNTTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.