Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003829.1

Orthogroup ID

OG0007881

Physical Location & Seq

Genomic Coordinates Reverse (-)

163176 .. 164291

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003829.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgtccagtgtccccgtgaaggatccaaaagaggttggcaggtggacgttactgccttaccatgtggtggcagattatgaggctgaagaggatgaccgaatccttgactctgacactacaggcatgatgccatctcgctctcagcagtgggatcacaacatttctgcaaaagttgctgagtttacagcaacgtttgagaaacaggcactggccttcaacattatctcccgcaagcgtgcttttggggaatttagatcagaagagacttatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTSCR1

Protein Analysis

91

Amino Acids

10.49

Weight (kDa)

4.83

Isoelectric Point (pI)

83.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17510 AT5G17510
fragaria_vesca	FvH4_7g34300 FvH4_7g34300
malus_domestica	MD01G1239600.v1.1
prunus_persica	Prupe.2G329500_v2.0.a1
pyrus_communis	pycom07g28390
rosa_chinensis	RchiOBHm_Chr1g0384691
rosa_laevigata	RLG00000026015
rosa_multiflora	Rmu_sc0003829.1_g000048 Rmu_sc0003829.1_g000049 Rmu_sc0014575.1_g000001 Rmu_sc0014575.1_g000002 Rmu_sc0032400.1_g000001 Rmu_sc0032400.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276450 Rroxscaffold_7G00217990
rosa_rugosa	Rorug01G0450800
rosa_samantha	Rh1AG475300 Rh1BG433500 Rh1CG447000 Rh1DG466000 Rh6BG009800
rosa_wichuraiana	Rw1G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	30
AccB7I	CCANNNNNTGG	1 cut(s)	67
AciI	CCGC	1 cut(s)	229
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	3 cut(s)	17, 30, 159
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	19, 67
AgsI	TTSAA	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	3 cut(s)	17, 30, 159
AlwNI	CAGNNNCTG	1 cut(s)	208
AoxI	GGCC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	22
BccI	CCATC	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 67
Bse1I	ACTGG	2 cut(s)	6, 213
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	19, 67
BseMII	CTCAG	2 cut(s)	155, 168
BseNI	ACTGG	2 cut(s)	6, 213
BshFI	GGCC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	19, 67
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	22, 151, 254
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	154, 169
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	3 cut(s)	17, 30, 159
BsrI	ACTGG	2 cut(s)	6, 213
BssMI	GATC	3 cut(s)	22, 151, 254
Bst6I	CTCTTC	2 cut(s)	81, 255
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	233, 237
BstDEI	CTNAG	2 cut(s)	141, 177
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	3 cut(s)	25, 154, 257
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	3 cut(s)	22, 151, 254
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	3 cut(s)	13, 152, 206
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	233, 237
CaiI	CAGNNNCTG	1 cut(s)	208
CviAII	CATG	2 cut(s)	62, 124
CviJI	RGCY	2 cut(s)	83, 212
CviKI_1	RGCY	2 cut(s)	83, 212
DdeI	CTNAG	2 cut(s)	141, 177
DpnI	GATC	3 cut(s)	24, 153, 256
DpnII	GATC	3 cut(s)	22, 151, 254
Eam1104I	CTCTTC	2 cut(s)	81, 255
EarI	CTCTTC	2 cut(s)	81, 255
Eco57I	CTGAAG	1 cut(s)	105
FaeI	CATG	2 cut(s)	65, 127
FaiI	YATR	4 cut(s)	63, 78, 125, 270
FatI	CATG	2 cut(s)	61, 123
FauI	CCCGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	65, 127
HinfI	GANTC	2 cut(s)	99, 107
Hpy166II	GTNNAC	2 cut(s)	45, 183
Hpy188I	TCNGA	2 cut(s)	112, 259
Hpy8I	GTNNAC	2 cut(s)	45, 183
HpyAV	CCTTC	2 cut(s)	13, 223
HpyCH4IV	ACGT	2 cut(s)	47, 191
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	2 cut(s)	141, 177
HpySE526I	ACGT	2 cut(s)	47, 191
Hsp92II	CATG	2 cut(s)	65, 127
Kzo9I	GATC	3 cut(s)	22, 151, 254
LpnPI	CCDG	5 cut(s)	19, 25, 105, 188, 194
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	2 cut(s)	47, 191
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	3 cut(s)	24, 153, 256
MboI	GATC	3 cut(s)	22, 151, 254
MboII	GAAGA	2 cut(s)	98, 272
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	25, 73, 82
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	3 cut(s)	22, 151, 254
NlaIII	CATG	2 cut(s)	65, 127
NlaIV	GGNNCC	1 cut(s)	24
PaqCI	CACCTGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	67
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp1406I	AACGTT	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	22
Sau3AI	GATC	3 cut(s)	22, 151, 254
SchI	GAGTC	1 cut(s)	101
SetI	ASST	4 cut(s)	36, 44, 50, 194
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	229
TaiI	ACGT	2 cut(s)	50, 194
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	99
TscAI	CASTG	3 cut(s)	13, 152, 213
TspRI	CASTG	3 cut(s)	13, 152, 213
Van91I	CCANNNNNTGG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.