Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007881

Physical Location & Seq

Genomic Coordinates Reverse (-)

30257291 .. 30261797

Gene Structure 4507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G329500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAAGAGGCAAAGGCATTGGCTCAACACCAACAGCAACTAATGCTACAGCAGCAGCAGCAGCAACACCAGCAGCAGCAACACCAGCAGCAGCAGCAGCAGCAACACCATCAACACCATCAACATCAACAGCAACAGCAACAGCAACATCAACAGCAACAGTTATTGCTCTTACAACAACTACAAAGGCAACAGCAACAAGCCCAACAGGCCGCGGCCATTTCCCGTTTCCCTTCCAACATCGACGCCCATTTGCGCCCACTCCGAGGCCTCAATCTCCAACCTAACCTTATCCCCAACCCCAACCCCAACCCCAACCCTAACCCTAACCCTAATCCTAATCCTAATTCTGCTCCTAATCTCCAACAAAATCCTGTTGCGAACCCGCAGCAACAGCCCCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGCAACAGAGGGCCATCCGACCCGGGAACCAGGCGGAGCTACAGATGGCGTACCAGGACGCCTGGCGGGTCTGTCATCCCGACTTCAAGCGTGCCTTCTCTTCCCTCGAAGACGCCTGCGAGAGGTTACTGCCTTATCATGTAGTGGCAGATTATGAGGCAGAGGAGGATGACAGAATCCTTGACTCTGACACAACAGGCCTGATACCATCTCGCTCTCAGCAGTGGGATCACAACATATCTGCTAAAGTTGCAGAGTTTACAGCAACATTTGAGAAACAGGCACTAGCCTTTAACATAATTTCTCGTAAACGAGCTTTGGGGGAATTTCGTTCCGAAGAGAGACTTATGGTTGAGCAGGCACTTTGCCAAGAAGAAAAACGAACGTGTCTGGAATTGAAAGCAGAGCTTGATTCAAGAGAGAAAGCTGGCCGGGAAGCTAAATTACGAATGGCAGCAATCGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAGCGCATGCTGAAATGTTGGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGTCTCAAGGCAATGATGTTGCTATTGGTCATGACATGAGAGAGCAGGAACACGGGGTTAACCCAGAAGAGATGATAAATGGATGGGGAAATAATATGCAAAGAGATGAGAAGGAACCATCTGAAGATTTTTTGAATGATGAAGAGACTGAGAATGGATCCACAGACATGCAGGATGGCTGGCGTGAAGTTGGGGAGTTTGATTTGAACACGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTSCR1

Protein Analysis

397

Amino Acids

45.65

Weight (kDa)

5.34

Isoelectric Point (pI)

69.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17510 AT5G17510
fragaria_vesca	FvH4_7g34300 FvH4_7g34300
malus_domestica	MD01G1239600.v1.1
prunus_persica	Prupe.2G329500_v2.0.a1
pyrus_communis	pycom07g28390
rosa_chinensis	RchiOBHm_Chr1g0384691
rosa_laevigata	RLG00000026015
rosa_multiflora	Rmu_sc0003829.1_g000048 Rmu_sc0003829.1_g000049 Rmu_sc0014575.1_g000001 Rmu_sc0014575.1_g000002 Rmu_sc0032400.1_g000001 Rmu_sc0032400.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276450 Rroxscaffold_7G00217990
rosa_rugosa	Rorug01G0450800
rosa_samantha	Rh1AG475300 Rh1BG433500 Rh1CG447000 Rh1DG466000 Rh6BG009800
rosa_wichuraiana	Rw1G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	215, 1186
AciI	CCGC	5 cut(s)	213, 215, 386, 464, 496
AclWI	GGATC	3 cut(s)	666, 1125, 1138
AcoI	YGGCCR	2 cut(s)	216, 859
AcsI	RAATTY	1 cut(s)	755
AcuI	CTGAAG	1 cut(s)	1116
AcyI	GRCGYC	3 cut(s)	246, 489, 543
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	4 cut(s)	266, 552, 957, 958
AflIII	ACRYGT	2 cut(s)	815, 1184
AgsI	TTSAA	5 cut(s)	517, 829, 846, 1108, 1180
AjnI	CCWGG	3 cut(s)	459, 483, 491
AluBI	AGCT	6 cut(s)	469, 746, 838, 857, 869, 908
AluI	AGCT	6 cut(s)	469, 746, 838, 857, 869, 908
Alw21I	GWGCWC	1 cut(s)	970
Alw26I	GTCTC	3 cut(s)	766, 981, 1112
Alw44I	GTGCAC	1 cut(s)	966
AlwI	GGATC	3 cut(s)	666, 1125, 1138
Ama87I	CYCGRG	3 cut(s)	452, 909, 945
AoxI	GGCC	7 cut(s)	210, 216, 268, 441, 628, 859, 948
ApaI	GGGCCC	1 cut(s)	952
ApaLI	GTGCAC	1 cut(s)	966
ApoI	RAATTY	1 cut(s)	755
AspLEI	GCGC	2 cut(s)	258, 928
AspS9I	GGNCC	3 cut(s)	441, 948, 949
AsuC2I	CCSGG	3 cut(s)	453, 454, 863
AvaI	CYCGRG	3 cut(s)	452, 909, 945
BaeGI	GKGCMC	2 cut(s)	952, 970
BamHI	GGATCC	1 cut(s)	1130
BanII	GRGCYC	1 cut(s)	952
BarI	GAAGNNNNNNTAC	2 cut(s)	858, 890
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	970
BccI	CCATC	8 cut(s)	117, 126, 452, 469, 646, 1050, 1099, 1142
BciT130I	CCWGG	3 cut(s)	461, 485, 493
BcnI	CCSGG	3 cut(s)	453, 454, 863
BcoDI	GTCTC	3 cut(s)	766, 981, 1112
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	2 cut(s)	47, 470
BglI	GCCNNNNNGGC	1 cut(s)	209
Bme1390I	CCNGG	6 cut(s)	453, 454, 461, 485, 493, 863
BmeT110I	CYCGRG	3 cut(s)	452, 909, 945
BmgT120I	GGNCC	3 cut(s)	441, 948, 949
BmiI	GGNNCC	5 cut(s)	458, 950, 951, 1089, 1132
BmrFI	CCNGG	6 cut(s)	453, 454, 461, 485, 493, 863
BpiI	GAAGAC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	963
BpuMI	CCSGG	3 cut(s)	453, 454, 863
BsaHI	GRCGYC	3 cut(s)	246, 489, 543
BsaI	GGTCTC	1 cut(s)	981
BsaJI	CCNNGG	3 cut(s)	213, 265, 452
Bsc4I	CCNNNNNNNGG	4 cut(s)	266, 552, 957, 958
Bse3DI	GCAATG	1 cut(s)	991
BseBI	CCWGG	3 cut(s)	461, 485, 493
BseDI	CCNNGG	3 cut(s)	213, 265, 452
BseGI	GGATG	5 cut(s)	444, 505, 604, 1061, 1153
BseLI	CCNNNNNNNGG	4 cut(s)	266, 552, 957, 958
BseMI	GCAATG	1 cut(s)	991
BseMII	CTCAG	2 cut(s)	662, 1113
BseRI	GAGGAG	1 cut(s)	608
BseSI	GKGCMC	2 cut(s)	952, 970
Bsh1236I	CGCG	2 cut(s)	215, 1186
BshFI	GGCC	7 cut(s)	212, 218, 270, 443, 630, 861, 950
BsiHKAI	GWGCWC	1 cut(s)	970
BsiHKCI	CYCGRG	3 cut(s)	452, 909, 945
BsiSI	CCGG	2 cut(s)	453, 862
BslI	CCNNNNNNNGG	4 cut(s)	266, 552, 957, 958
BsmAI	GTCTC	3 cut(s)	766, 981, 1112
BsnI	GGCC	7 cut(s)	212, 218, 270, 443, 630, 861, 950
Bso31I	GGTCTC	1 cut(s)	981
BsoBI	CYCGRG	3 cut(s)	452, 909, 945
Bsp120I	GGGCCC	1 cut(s)	948
Bsp1286I	GDGCHC	2 cut(s)	952, 970
Bsp143I	GATC	2 cut(s)	658, 1130
BspACI	CCGC	5 cut(s)	213, 215, 386, 464, 496
BspANI	GGCC	7 cut(s)	212, 218, 270, 443, 630, 861, 950
BspCNI	CTCAG	2 cut(s)	661, 1114
BspFNI	CGCG	2 cut(s)	215, 1186
BspHI	TCATGA	1 cut(s)	1003
BspLI	GGNNCC	5 cut(s)	458, 950, 951, 1089, 1132
BspPI	GGATC	3 cut(s)	666, 1125, 1138
BspTNI	GGTCTC	1 cut(s)	981
BsrDI	GCAATG	1 cut(s)	991
BssECI	CCNNGG	3 cut(s)	213, 265, 452
BssMI	GATC	2 cut(s)	658, 1130
BssNI	GRCGYC	3 cut(s)	246, 489, 543
Bst2UI	CCWGG	3 cut(s)	461, 485, 493
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	4 cut(s)	535, 762, 1035, 1110
BstACI	GRCGYC	3 cut(s)	246, 489, 543
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstC8I	GCNNGC	7 cut(s)	522, 547, 789, 859, 906, 930, 1154
BstDEI	CTNAG	2 cut(s)	648, 1122
BstDSI	CCRYGG	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	550
BstF5I	GGATG	5 cut(s)	444, 505, 604, 1061, 1153
BstFNI	CGCG	2 cut(s)	215, 1186
BstHHI	GCGC	2 cut(s)	258, 928
BstKTI	GATC	2 cut(s)	661, 1133
BstMAI	GTCTC	3 cut(s)	766, 981, 1112
BstMBI	GATC	2 cut(s)	658, 1130
BstNI	CCWGG	3 cut(s)	461, 485, 493
BstNSI	RCATGY	2 cut(s)	932, 1144
BstSCI	CCNGG	6 cut(s)	451, 452, 459, 483, 491, 861
BstSFI	CTRYAG	2 cut(s)	47, 470
BstSLI	GKGCMC	2 cut(s)	952, 970
BstUI	CGCG	2 cut(s)	215, 1186
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	1130
BstYI	RGATCY	1 cut(s)	1130
BsuRI	GGCC	7 cut(s)	212, 218, 270, 443, 630, 861, 950
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	5 cut(s)	444, 505, 604, 1061, 1153
BtsI	GCAGTG	1 cut(s)	659
BtsIMutI	CAGTG	1 cut(s)	659
Cac8I	GCNNGC	7 cut(s)	522, 547, 789, 859, 906, 930, 1154
CciI	TCATGA	1 cut(s)	1003
CfoI	GCGC	2 cut(s)	258, 928
Cfr13I	GGNCC	3 cut(s)	441, 948, 949
Cfr42I	CCGCGG	1 cut(s)	216
Cfr9I	CCCGGG	1 cut(s)	452
CseI	GACGC	3 cut(s)	254, 497, 551
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	5 cut(s)	569, 929, 1004, 1009, 1141
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	2 cut(s)	648, 1122
DpnI	GATC	2 cut(s)	660, 1132
DpnII	GATC	2 cut(s)	658, 1130
EaeI	YGGCCR	2 cut(s)	216, 859
Eam1104I	CTCTTC	4 cut(s)	535, 762, 1035, 1110
EarI	CTCTTC	4 cut(s)	535, 762, 1035, 1110
EciI	GGCGGA	1 cut(s)	479
Eco147I	AGGCCT	2 cut(s)	270, 630
Eco24I	GRGCYC	1 cut(s)	952
Eco31I	GGTCTC	1 cut(s)	981
Eco57I	CTGAAG	1 cut(s)	1116
Eco88I	CYCGRG	3 cut(s)	452, 909, 945
EcoNI	CCTNNNNNAGG	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	949
EcoRII	CCWGG	3 cut(s)	459, 483, 491
EcoT38I	GRGCYC	1 cut(s)	952
FaeI	CATG	5 cut(s)	572, 932, 1007, 1012, 1144
FalI	AAGNNNNNCTT	6 cut(s)	509, 541, 759, 791, 822, 854
FatI	CATG	5 cut(s)	568, 928, 1003, 1008, 1140
FauI	CCCGC	2 cut(s)	393, 489
FokI	GGATG	5 cut(s)	431, 492, 611, 1068, 1160
FriOI	GRGCYC	1 cut(s)	952
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	2 cut(s)	257, 927
HaeIII	GGCC	7 cut(s)	212, 218, 270, 443, 630, 861, 950
HapII	CCGG	2 cut(s)	453, 862
HgaI	GACGC	3 cut(s)	254, 497, 551
HhaI	GCGC	2 cut(s)	258, 928
Hin1I	GRCGYC	3 cut(s)	246, 489, 543
Hin1II	CATG	5 cut(s)	572, 932, 1007, 1012, 1144
Hin6I	GCGC	2 cut(s)	256, 926
HinP1I	GCGC	2 cut(s)	256, 926
HincII	GTYRAC	1 cut(s)	1033
HindII	GTYRAC	1 cut(s)	1033
HinfI	GANTC	4 cut(s)	606, 614, 842, 917
HpaI	GTTAAC	1 cut(s)	1033
HpaII	CCGG	2 cut(s)	453, 862
Hpy166II	GTNNAC	4 cut(s)	690, 740, 968, 1033
Hpy188I	TCNGA	5 cut(s)	266, 449, 619, 766, 1096
Hpy188III	TCNNGA	4 cut(s)	509, 821, 846, 1004
Hpy8I	GTNNAC	4 cut(s)	690, 740, 968, 1033
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	3 cut(s)	243, 535, 1078
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	815
HpyCH4V	TGCA	4 cut(s)	683, 968, 1072, 1144
HpyF3I	CTNAG	2 cut(s)	648, 1122
HpySE526I	ACGT	1 cut(s)	815
Hsp92I	GRCGYC	3 cut(s)	246, 489, 543
Hsp92II	CATG	5 cut(s)	572, 932, 1007, 1012, 1144
HspAI	GCGC	2 cut(s)	256, 926
KspAI	GTTAAC	1 cut(s)	1033
KspI	CCGCGG	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	658, 1130
LmnI	GCTCC	2 cut(s)	358, 466
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	1 cut(s)	815
MaeIII	GTNAC	2 cut(s)	555, 918
MalI	GATC	2 cut(s)	660, 1132
MboI	GATC	2 cut(s)	658, 1130
MboII	GAAGA	8 cut(s)	17, 522, 551, 779, 815, 1052, 1109, 1127
MflI	RGATCY	1 cut(s)	1130
MhlI	GDGCHC	2 cut(s)	952, 970
MluCI	AATT	5 cut(s)	346, 729, 755, 824, 872
MluI	ACGCGT	1 cut(s)	1184
MlyI	GAGTC	2 cut(s)	608, 926
MmeI	TCCRAC	4 cut(s)	261, 304, 388, 472
MnlI	CCTC	8 cut(s)	260, 281, 432, 545, 546, 580, 586, 589
MseI	TTAA	3 cut(s)	723, 1032, 1189
MslI	CAYNNNNRTG	1 cut(s)	1139
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	453, 862
MspR9I	CCNGG	6 cut(s)	453, 454, 461, 485, 493, 863
MvaI	CCWGG	3 cut(s)	461, 485, 493
MvnI	CGCG	2 cut(s)	215, 1186
NciI	CCSGG	3 cut(s)	453, 454, 863
NdeII	GATC	2 cut(s)	658, 1130
NlaIII	CATG	5 cut(s)	572, 932, 1007, 1012, 1144
NlaIV	GGNNCC	5 cut(s)	458, 950, 951, 1089, 1132
NmuCI	GTSAC	1 cut(s)	918
NspI	RCATGY	2 cut(s)	932, 1144
PaeI	GCATGC	1 cut(s)	932
PagI	TCATGA	1 cut(s)	1003
PceI	AGGCCT	2 cut(s)	270, 630
PfeI	GAWTC	2 cut(s)	606, 842
PleI	GAGTC	2 cut(s)	608, 925
PpsI	GAGTC	2 cut(s)	608, 925
Psp6I	CCWGG	3 cut(s)	459, 483, 491
PspGI	CCWGG	3 cut(s)	459, 483, 491
PspN4I	GGNNCC	5 cut(s)	458, 950, 951, 1089, 1132
PspOMI	GGGCCC	1 cut(s)	948
PspPI	GGNCC	3 cut(s)	441, 948, 949
PsuI	RGATCY	1 cut(s)	1130
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	1139
SacII	CCGCGG	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	723, 1032, 1189
Sau3AI	GATC	2 cut(s)	658, 1130
Sau96I	GGNCC	3 cut(s)	441, 948, 949
SchI	GAGTC	2 cut(s)	608, 926
ScrFI	CCNGG	6 cut(s)	453, 454, 461, 485, 493, 863
SduI	GDGCHC	2 cut(s)	952, 970
SfcI	CTRYAG	2 cut(s)	47, 470
Sfr303I	CCGCGG	1 cut(s)	216
SgrBI	CCGCGG	1 cut(s)	216
SmaI	CCCGGG	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	1139
SmlI	CTYRAG	1 cut(s)	978
SmoI	CTYRAG	1 cut(s)	978
SphI	GCATGC	1 cut(s)	932
Sse9I	AATT	5 cut(s)	346, 729, 755, 824, 872
SseBI	AGGCCT	2 cut(s)	270, 630
SsiI	CCGC	5 cut(s)	213, 215, 386, 464, 496
SspMI	CTAG	1 cut(s)	716
StuI	AGGCCT	2 cut(s)	270, 630
StyD4I	CCNGG	6 cut(s)	451, 452, 459, 483, 491, 861
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	818
TaqI	TCGA	2 cut(s)	243, 537
TasI	AATT	5 cut(s)	346, 729, 755, 824, 872
TauI	GCSGC	2 cut(s)	215, 218
TfiI	GAWTC	2 cut(s)	606, 842
Tru1I	TTAA	3 cut(s)	723, 1032, 1189
Tru9I	TTAA	3 cut(s)	723, 1032, 1189
TscAI	CASTG	1 cut(s)	659
TseFI	GTSAC	1 cut(s)	918
Tsp45I	GTSAC	1 cut(s)	918
TspDTI	ATGAA	1 cut(s)	1128
TspMI	CCCGGG	1 cut(s)	452
TspRI	CASTG	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	966
XagI	CCTNNNNNAGG	1 cut(s)	550
XapI	RAATTY	1 cut(s)	755
XceI	RCATGY	2 cut(s)	932, 1144
XmaI	CCCGGG	1 cut(s)	452
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.