Rh1CG447000

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007881
Physical Location & Seq
Forward (+)
69785098 .. 69790197
5100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG447000.1

Sequence Viewer

Length: 1149 bp
ATGGAAGAAGCGAAAGCAATGGCTCAACATCAGCAGCAGCAGCAGCAGCAGCTATTGTTACAGCAGCAACAACAGCATCAGCAGCAGCAGCAACACCAGCAACAGCATCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGTTATTGCTTTTACATCAATTACAAAGACAACAGCAACAGGCGCAACAGGCCGCTGCCATTTCTCGTTTCCCTTCCAACATCGACGCTCATTTGCGCCCACTCCGAGCCCTCAATCTCCAACCTAACCAAATCTCCAACCCCAACCCTAACCCTACCCCCAACCCCAACCCCAACCCCAACCCTAACCCTAACCCCAATTCTGTTCTTCCCAATCTCCAACAAAATCCTAATGAGAACCCGCAGCAACAGCCCCAACAGCAGCAGCAACAGAGGGCGATCCGTCCGGGTAACCAGGCCGAGCTGCAAATGGCGTACCAGGACGCCTGGCGGGTCTGCCATCCGGATTTCAAGCGTCCCTTCTCTTCTCTCGAAGACGCATGTGAAAGGTTACTGCCTTACCATGTGGTGGCAGATTATGAGGCTGAAGAGGATGACCGAATCCTTGACTCTGACACTACAGGCATGATGCCATCTCGCTCTCAGCAGTGGGATCACAACATTTCTGCAAAAGTTGCTGAGTTTACAGCAACGTTTGAGAAACAGGCACTGGCCTTCAACATTATCTCCCGCAAGCGTGCTTTTGGGGAATTTAGATCAGAAGAGAGACTTATGATTGAGCAGGCTCTTTGCCAAGAAGAAAAACGAGCATGTCTGGAATTAAGAGCAGAGCTTGATTCAAGAGAAAAAGCTCGAATGGCAGCAATTGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAACACATGCCGAAATGTTGGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGGCTCAAGGCAATGATGTCCCGATTGGTCATGATATGAGAGTACAGGAACACGGGGCTAACCCAGAAGAGATGATAAATGGATGGGGAAATAGTATGCAAAGAGATGAGAAAGAACCATCTGAAGATTTTCTAAATGACGAGGAGACTGAGAATGGATCTACTGGCATGCAGGATGGCTGGCGTGAAGTTGGAGAATTTGATTTGAACACACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

382

Amino Acids

43.94

Weight (kDa)

5.12

Isoelectric Point (pI)

71.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 155 - 269 6.2e-27 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 550
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 4 cut(s) 195, 383, 472, 712
AclI AACGTT 1 cut(s) 674
AclWI GGATC 3 cut(s) 415, 642, 1096
AcsI RAATTY 2 cut(s) 731, 1127
AcuI CTGAAG 2 cut(s) 588, 1074
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 2 cut(s) 458, 975
AfiI CCNNNNNNNGG 3 cut(s) 550, 915, 916
AflIII ACRYGT 1 cut(s) 1142
AgsI TTSAA 4 cut(s) 493, 700, 822, 1138
AjnI CCWGG 3 cut(s) 435, 459, 467
AluBI AGCT 5 cut(s) 52, 445, 814, 833, 866
AluI AGCT 5 cut(s) 52, 445, 814, 833, 866
Alw21I GWGCWC 1 cut(s) 928
Alw26I GTCTC 2 cut(s) 742, 1070
Alw44I GTGCAC 1 cut(s) 924
AlwI GGATC 3 cut(s) 415, 642, 1096
AlwNI CAGNNNCTG 1 cut(s) 691
Ama87I CYCGRG 2 cut(s) 867, 903
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 4 cut(s) 192, 438, 693, 906
ApaI GGGCCC 1 cut(s) 910
ApaLI GTGCAC 1 cut(s) 924
ApoI RAATTY 2 cut(s) 731, 1127
Asp700I GAANNNNTTC 1 cut(s) 1059
AspLEI GCGC 2 cut(s) 187, 240
AspS9I GGNCC 2 cut(s) 906, 907
AsuC2I CCSGG 1 cut(s) 429
AvaI CYCGRG 2 cut(s) 867, 903
BaeGI GKGCMC 2 cut(s) 910, 928
BanII GRGCYC 3 cut(s) 253, 910, 937
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 928
BccI CCATC 5 cut(s) 489, 622, 1008, 1057, 1100
BciT130I CCWGG 3 cut(s) 437, 461, 469
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 2 cut(s) 742, 1070
BfmI CTRYAG 1 cut(s) 600
Bme1390I CCNGG 4 cut(s) 429, 437, 461, 469
BmeT110I CYCGRG 2 cut(s) 867, 903
BmgT120I GGNCC 2 cut(s) 906, 907
BmiI GGNNCC 2 cut(s) 908, 909
BmrFI CCNGG 4 cut(s) 429, 437, 461, 469
BmsI GCATC 3 cut(s) 85, 115, 600
BpiI GAAGAC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 921
BpuMI CCSGG 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 484
BsaXI ACNNNNNCTCC 4 cut(s) 260, 290, 692, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 550, 915, 916
Bse1I ACTGG 2 cut(s) 696, 1099
Bse3DI GCAATG 2 cut(s) 24, 949
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 3 cut(s) 437, 461, 469
BseGI GGATG 4 cut(s) 481, 580, 1019, 1111
BseLI CCNNNNNNNGG 3 cut(s) 550, 915, 916
BseMI GCAATG 2 cut(s) 24, 949
BseMII CTCAG 3 cut(s) 638, 651, 1071
BseNI ACTGG 2 cut(s) 696, 1099
BseRI GAGGAG 1 cut(s) 1088
BseSI GKGCMC 2 cut(s) 910, 928
BshFI GGCC 4 cut(s) 194, 440, 695, 908
BsiHKAI GWGCWC 1 cut(s) 928
BsiHKCI CYCGRG 2 cut(s) 867, 903
BsiSI CCGG 2 cut(s) 428, 485
BslFI GGGAC 2 cut(s) 483, 935
BslI CCNNNNNNNGG 3 cut(s) 550, 915, 916
BsmAI GTCTC 2 cut(s) 742, 1070
BsmFI GGGAC 2 cut(s) 483, 935
BsnI GGCC 4 cut(s) 194, 440, 695, 908
BsoBI CYCGRG 2 cut(s) 867, 903
Bsp120I GGGCCC 1 cut(s) 906
Bsp1286I GDGCHC 4 cut(s) 253, 910, 928, 937
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 420, 634, 737, 1088
BspACI CCGC 4 cut(s) 195, 383, 472, 712
BspANI GGCC 4 cut(s) 194, 440, 695, 908
BspCNI CTCAG 3 cut(s) 637, 652, 1072
BspEI TCCGGA 1 cut(s) 484
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 2 cut(s) 908, 909
BspPI GGATC 3 cut(s) 415, 642, 1096
BsrDI GCAATG 2 cut(s) 24, 949
BsrI ACTGG 2 cut(s) 696, 1099
BssMI GATC 4 cut(s) 420, 634, 737, 1088
BssNI GRCGYC 1 cut(s) 465
Bst2UI CCWGG 3 cut(s) 437, 461, 469
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 4 cut(s) 511, 564, 738, 993
BstACI GRCGYC 1 cut(s) 465
BstAPI GCANNNNNTGC 1 cut(s) 656
BstC8I GCNNGC 6 cut(s) 716, 720, 765, 864, 1100, 1112
BstDEI CTNAG 3 cut(s) 624, 660, 1080
BstEII GGTNACC 1 cut(s) 431
BstF5I GGATG 4 cut(s) 481, 580, 1019, 1111
BstHHI GCGC 2 cut(s) 187, 240
BstKTI GATC 4 cut(s) 423, 637, 740, 1091
BstMAI GTCTC 2 cut(s) 742, 1070
BstMBI GATC 4 cut(s) 420, 634, 737, 1088
BstNI CCWGG 3 cut(s) 437, 461, 469
BstNSI RCATGY 4 cut(s) 525, 795, 890, 1102
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 4 cut(s) 427, 435, 459, 467
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 2 cut(s) 910, 928
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 1088
BstYI RGATCY 1 cut(s) 1088
BsuRI GGCC 4 cut(s) 194, 440, 695, 908
BtsCI GGATG 4 cut(s) 481, 580, 1019, 1111
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 2 cut(s) 635, 689
Cac8I GCNNGC 6 cut(s) 716, 720, 765, 864, 1100, 1112
CaiI CAGNNNCTG 1 cut(s) 691
CciI TCATGA 1 cut(s) 961
CfoI GCGC 2 cut(s) 187, 240
Cfr13I GGNCC 2 cut(s) 906, 907
CseI GACGC 4 cut(s) 236, 473, 485, 527
Csp6I GTAC 2 cut(s) 457, 974
CviAII CATG 7 cut(s) 522, 545, 607, 792, 887, 962, 1099
CviQI GTAC 2 cut(s) 457, 974
DdeI CTNAG 3 cut(s) 624, 660, 1080
DpnI GATC 4 cut(s) 422, 636, 739, 1090
DpnII GATC 4 cut(s) 420, 634, 737, 1088
Eam1104I CTCTTC 4 cut(s) 511, 564, 738, 993
EarI CTCTTC 4 cut(s) 511, 564, 738, 993
Eco24I GRGCYC 3 cut(s) 253, 910, 937
Eco57I CTGAAG 2 cut(s) 588, 1074
Eco88I CYCGRG 2 cut(s) 867, 903
Eco91I GGTNACC 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 907
EcoO65I GGTNACC 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 435, 459, 467
EcoT38I GRGCYC 3 cut(s) 253, 910, 937
FaeI CATG 7 cut(s) 525, 548, 610, 795, 890, 965, 1102
FalI AAGNNNNNCTT 4 cut(s) 485, 517, 735, 767
FaqI GGGAC 2 cut(s) 483, 935
FatI CATG 7 cut(s) 521, 544, 606, 791, 886, 961, 1098
FauI CCCGC 3 cut(s) 390, 465, 719
FokI GGATG 4 cut(s) 468, 587, 1026, 1118
FriOI GRGCYC 3 cut(s) 253, 910, 937
GlaI GCGC 2 cut(s) 186, 239
HaeIII GGCC 4 cut(s) 194, 440, 695, 908
HapII CCGG 2 cut(s) 428, 485
HgaI GACGC 4 cut(s) 236, 473, 485, 527
HhaI GCGC 2 cut(s) 187, 240
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 7 cut(s) 525, 548, 610, 795, 890, 965, 1102
Hin6I GCGC 2 cut(s) 185, 238
HinP1I GCGC 2 cut(s) 185, 238
HinfI GANTC 4 cut(s) 582, 590, 818, 875
HpaII CCGG 2 cut(s) 428, 485
Hpy166II GTNNAC 2 cut(s) 666, 926
Hpy188I TCNGA 4 cut(s) 248, 595, 742, 1054
Hpy188III TCNNGA 6 cut(s) 485, 512, 797, 822, 952, 962
Hpy8I GTNNAC 2 cut(s) 666, 926
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 225, 511, 706
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 2 cut(s) 674, 1144
HpyCH4V TGCA 5 cut(s) 448, 650, 926, 1030, 1102
HpyF3I CTNAG 3 cut(s) 624, 660, 1080
HpySE526I ACGT 2 cut(s) 674, 1144
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 7 cut(s) 525, 548, 610, 795, 890, 965, 1102
HspAI GCGC 2 cut(s) 185, 238
Kpn2I TCCGGA 1 cut(s) 484
Kzo9I GATC 4 cut(s) 420, 634, 737, 1088
LweI GCATC 3 cut(s) 85, 115, 600
MaeII ACGT 2 cut(s) 674, 1144
MaeIII GTNAC 4 cut(s) 57, 431, 531, 876
MalI GATC 4 cut(s) 422, 636, 739, 1090
MboI GATC 4 cut(s) 420, 634, 737, 1088
MboII GAAGA 9 cut(s) 17, 341, 498, 527, 581, 755, 791, 1010, 1067
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 1 cut(s) 1088
MhlI GDGCHC 4 cut(s) 253, 910, 928, 937
MluCI AATT 6 cut(s) 161, 340, 731, 800, 846, 1127
MlyI GAGTC 2 cut(s) 584, 884
MmeI TCCRAC 5 cut(s) 243, 286, 303, 385, 1102
MnlI CCTC 5 cut(s) 263, 408, 556, 565, 1066
MroI TCCGGA 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 1059
MseI TTAA 2 cut(s) 803, 1147
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 428, 485
MspR9I CCNGG 4 cut(s) 429, 437, 461, 469
MunI CAATTG 1 cut(s) 846
MvaI CCWGG 3 cut(s) 437, 461, 469
NciI CCSGG 1 cut(s) 429
NdeII GATC 4 cut(s) 420, 634, 737, 1088
NlaIII CATG 7 cut(s) 525, 548, 610, 795, 890, 965, 1102
NlaIV GGNNCC 2 cut(s) 908, 909
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 876
NspI RCATGY 4 cut(s) 525, 795, 890, 1102
PaeI GCATGC 1 cut(s) 1102
PagI TCATGA 1 cut(s) 961
PdmI GAANNNNTTC 1 cut(s) 1059
PfeI GAWTC 2 cut(s) 582, 818
PflMI CCANNNNNTGG 1 cut(s) 550
PleI GAGTC 2 cut(s) 584, 883
PpsI GAGTC 2 cut(s) 584, 883
Psp1406I AACGTT 1 cut(s) 674
Psp6I CCWGG 3 cut(s) 435, 459, 467
PspEI GGTNACC 1 cut(s) 431
PspGI CCWGG 3 cut(s) 435, 459, 467
PspN4I GGNNCC 2 cut(s) 908, 909
PspOMI GGGCCC 1 cut(s) 906
PspPI GGNCC 2 cut(s) 906, 907
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 1 cut(s) 1088
RsaI GTAC 2 cut(s) 458, 975
RsaNI GTAC 2 cut(s) 457, 974
SaqAI TTAA 2 cut(s) 803, 1147
Sau3AI GATC 4 cut(s) 420, 634, 737, 1088
Sau96I GGNCC 2 cut(s) 906, 907
SchI GAGTC 2 cut(s) 584, 884
ScrFI CCNGG 4 cut(s) 429, 437, 461, 469
SduI GDGCHC 4 cut(s) 253, 910, 928, 937
SetI ASST 9 cut(s) 54, 268, 447, 533, 677, 816, 835, 868, 1147
SfaNI GCATC 3 cut(s) 85, 115, 600
SfcI CTRYAG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 936
SmoI CTYRAG 1 cut(s) 936
SphI GCATGC 1 cut(s) 1102
Sse9I AATT 6 cut(s) 161, 340, 731, 800, 846, 1127
SsiI CCGC 4 cut(s) 195, 383, 472, 712
StyD4I CCNGG 4 cut(s) 427, 435, 459, 467
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 2 cut(s) 677, 1147
TaqI TCGA 3 cut(s) 225, 513, 835
TaqII GACCGA 1 cut(s) 594
TasI AATT 6 cut(s) 161, 340, 731, 800, 846, 1127
TatI WGTACW 1 cut(s) 973
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 582, 818
Tru1I TTAA 2 cut(s) 803, 1147
Tru9I TTAA 2 cut(s) 803, 1147
TscAI CASTG 2 cut(s) 635, 696
TseFI GTSAC 1 cut(s) 876
Tsp45I GTSAC 1 cut(s) 876
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 2 cut(s) 635, 696
Van91I CCANNNNNTGG 1 cut(s) 550
VneI GTGCAC 1 cut(s) 924
XapI RAATTY 2 cut(s) 731, 1127
XceI RCATGY 4 cut(s) 525, 795, 890, 1102
XmnI GAANNNNTTC 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.