Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014575.1

Orthogroup ID

OG0007881

Physical Location & Seq

Genomic Coordinates Forward (+)

3677 .. 3988

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014575.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggcagcgattgttcaggcagagcaagctcgggttgagtcacaaacacatgccgaaatgttggctcgggccccaataagggcaagtgcacttggggctcaaggcaatgatgtcccgattggtcatgatatgagagtacaggaacacggggctaacccagaagagatgataaatggatggggaaatagtatgcaaagagatgagaaagaaccatctgaagattttctaaatgacgaggagactgagaatggatctactggcatgcaggatggctggcgtgaagttggagaatttgatttgaacacacgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTSCR1

Protein Analysis

103

Amino Acids

11.4

Weight (kDa)

4.37

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17510 AT5G17510
fragaria_vesca	FvH4_7g34300 FvH4_7g34300
malus_domestica	MD01G1239600.v1.1
prunus_persica	Prupe.2G329500_v2.0.a1
pyrus_communis	pycom07g28390
rosa_chinensis	RchiOBHm_Chr1g0384691
rosa_laevigata	RLG00000026015
rosa_multiflora	Rmu_sc0003829.1_g000048 Rmu_sc0003829.1_g000049 Rmu_sc0014575.1_g000001 Rmu_sc0014575.1_g000002 Rmu_sc0032400.1_g000001 Rmu_sc0032400.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276450 Rroxscaffold_7G00217990
rosa_rugosa	Rorug01G0450800
rosa_samantha	Rh1AG475300 Rh1BG433500 Rh1CG447000 Rh1DG466000 Rh6BG009800
rosa_wichuraiana	Rw1G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	78, 79
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	301
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	233
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	259
Ama87I	CYCGRG	2 cut(s)	30, 66
AoxI	GGCC	1 cut(s)	69
ApaI	GGGCCC	1 cut(s)	73
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	69, 70
AvaI	CYCGRG	2 cut(s)	30, 66
BaeGI	GKGCMC	2 cut(s)	73, 91
BanII	GRGCYC	2 cut(s)	73, 100
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	171, 220, 263
BcoDI	GTCTC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmeT110I	CYCGRG	2 cut(s)	30, 66
BmgT120I	GGNCC	2 cut(s)	69, 70
BmiI	GGNNCC	2 cut(s)	71, 72
BpuEI	CTTGAG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 79
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	182, 274
BseLI	CCNNNNNNNGG	2 cut(s)	78, 79
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	2 cut(s)	73, 91
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	2 cut(s)	30, 66
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	78, 79
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	2 cut(s)	30, 66
Bsp120I	GGGCCC	1 cut(s)	69
Bsp1286I	GDGCHC	3 cut(s)	73, 91, 100
Bsp143I	GATC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	71, 72
BspPI	GGATC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	27, 263, 275
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	182, 274
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 95
BstNSI	RCATGY	2 cut(s)	53, 265
BstSLI	GKGCMC	2 cut(s)	73, 91
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	2 cut(s)	182, 274
Cac8I	GCNNGC	3 cut(s)	27, 263, 275
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	69, 70
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	3 cut(s)	50, 125, 262
CviJI	RGCY	6 cut(s)	29, 65, 71, 98, 152, 273
CviKI_1	RGCY	6 cut(s)	29, 65, 71, 98, 152, 273
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco24I	GRGCYC	2 cut(s)	73, 100
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	2 cut(s)	30, 66
EcoO109I	RGGNCCY	1 cut(s)	70
EcoT38I	GRGCYC	2 cut(s)	73, 100
FaeI	CATG	3 cut(s)	53, 128, 265
FaiI	YATR	5 cut(s)	51, 126, 131, 191, 263
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	49, 124, 261
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	189, 281
FriOI	GRGCYC	2 cut(s)	73, 100
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	53, 128, 265
HinfI	GANTC	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	115, 125
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	3 cut(s)	89, 193, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 95
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	3 cut(s)	53, 128, 265
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	6 cut(s)	2, 125, 171, 243, 251, 259
Lsp1109I	GCAGC	1 cut(s)	17
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	2 cut(s)	173, 230
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	3 cut(s)	73, 91, 100
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	26, 95
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	3 cut(s)	53, 128, 265
NlaIV	GGNNCC	2 cut(s)	71, 72
NmuCI	GTSAC	1 cut(s)	39
NspI	RCATGY	2 cut(s)	53, 265
PaeI	GCATGC	1 cut(s)	265
PagI	TCATGA	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	71, 72
PspOMI	GGGCCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	69, 70
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	2 cut(s)	69, 70
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	73, 91, 100
SetI	ASST	2 cut(s)	31, 310
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	310
TasI	AATT	1 cut(s)	290
TatI	WGTACW	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	39
VneI	GTGCAC	1 cut(s)	87
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	2 cut(s)	53, 265
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.