Rroxscaffold_4G00276450

Conserved region of unknown function on GLTSCR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007881
Physical Location & Seq
Reverse (-)
34429 .. 39371
4943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00276450.1

Sequence Viewer

Length: 1140 bp
ATGGAAGAAGCGAAAGCAATGGCTCAACATCAGCAGCAGCAGCTATTGTTACAGCAGCAACAACAGCATCAGCAACAGCAGCAGCAGCAACAGCATCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGTTATTGCTTTTACATCAATTACAGAGACAACAGCAACAGGCGCAACAGGCCGCTGCCATTTCTCGTTTCCCTTCCAACATCGACGCTCATTTGCGCCCACTCCGAGCCCTCAATCTCCAACCTAACCAAATCTCCAACCCCAACCCCAACCCGAACCCTACCCCCAACCCGAACCCGAACCCGAACCCCAACCCTAACCCTAACCCCAATTCTGTTCTTCCCAATCTCCAACAAAATCCTAATGAGAACCCGCAGCAACAGCAGCAGCAACAGAGGGCGATCCGTCCGGGTAACCAGGCCGAGCTGCAAATGGCGTACCAGGACGCCTGGCGGGTCTGCCATCCGGATTTCAAACGTCCCTTCTCTTCTCTCGAAGACGCATGTGAAAGGTTACTGCCTTACCATGTGGTGGCAGATTATGAGGCTGAAGAGGATGACCGAATCCTTGACTCTGACACTACAGGCATGATGCCATCTCGCTCTCAGCAGTGGGATCACAACATTTCCGCAAAAGTTGCTGAGTTTACAGCAACGTTTGAGAAACAGGCACTGGCCTTCAACATTATCTCCCGCAAGCGTGCTTTTGGGGAATTTAGATCAGAAGAGAGACTTATGATTGAGCAGGCTCTTTGCCAAGAAGAAAAACGAGCATGTCTGGAATTAAGAGCAGAGCTTGATTCAAGAGAAAAAGCTCGAATGGCAGCAATTGTTCAGGCAGAGCAAGCTCGGGTTGAGTCACAAACACATGCCGAAATGTTGGCTCGGGCCCCCATAAGGGCAAGTGCACTTGGGGCTCAAGGCAATGATGTCCCGATTGGTCATGATATGAGAGTACAGGAACATGGGGCTAACCCAGAAGAGATGATAAATGGATGGGGAAATAGTATGCAAAGAGATGAGAAAGAACCATCTGAAGATTTTCTAAATGACGAGGAGACTGAGAATGGATCTACTGGCATGCAGGATGGCTGGCGTGAAGTTGGAGAATTTGATTTGAACACACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTSCR1

Protein Analysis

379

Amino Acids

43.49

Weight (kDa)

5.07

Isoelectric Point (pI)

69.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTSCR1 PF15249 152 - 266 6.1e-27 Conserved region of unknown function on GLTSCR protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 5 cut(s) 183, 383, 463, 639, 703
AclI AACGTT 1 cut(s) 665
AclWI GGATC 3 cut(s) 406, 633, 1087
AcsI RAATTY 2 cut(s) 722, 1118
AcuI CTGAAG 2 cut(s) 579, 1065
AcyI GRCGYC 1 cut(s) 456
AfaI GTAC 2 cut(s) 449, 966
AfiI CCNNNNNNNGG 3 cut(s) 541, 906, 907
AflIII ACRYGT 1 cut(s) 1133
AgsI TTSAA 4 cut(s) 484, 691, 813, 1129
AjnI CCWGG 3 cut(s) 426, 450, 458
AluBI AGCT 5 cut(s) 43, 436, 805, 824, 857
AluI AGCT 5 cut(s) 43, 436, 805, 824, 857
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 3 cut(s) 151, 733, 1061
Alw44I GTGCAC 1 cut(s) 915
AlwI GGATC 3 cut(s) 406, 633, 1087
AlwNI CAGNNNCTG 1 cut(s) 682
Ama87I CYCGRG 2 cut(s) 858, 894
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 4 cut(s) 180, 429, 684, 897
ApaI GGGCCC 1 cut(s) 901
ApaLI GTGCAC 1 cut(s) 915
ApoI RAATTY 2 cut(s) 722, 1118
Asp700I GAANNNNTTC 1 cut(s) 1050
AspLEI GCGC 2 cut(s) 175, 228
AspS9I GGNCC 2 cut(s) 897, 898
AsuC2I CCSGG 1 cut(s) 420
AvaI CYCGRG 2 cut(s) 858, 894
BaeGI GKGCMC 2 cut(s) 901, 919
BanII GRGCYC 3 cut(s) 241, 901, 928
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 919
BccI CCATC 5 cut(s) 480, 613, 999, 1048, 1091
BciT130I CCWGG 3 cut(s) 428, 452, 460
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 3 cut(s) 151, 733, 1061
BfmI CTRYAG 1 cut(s) 591
Bme1390I CCNGG 4 cut(s) 420, 428, 452, 460
BmeT110I CYCGRG 2 cut(s) 858, 894
BmgT120I GGNCC 2 cut(s) 897, 898
BmiI GGNNCC 2 cut(s) 899, 900
BmrFI CCNGG 4 cut(s) 420, 428, 452, 460
BmsI GCATC 3 cut(s) 76, 103, 591
BpiI GAAGAC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 912
BpuMI CCSGG 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 4 cut(s) 248, 278, 683, 713
Bsc4I CCNNNNNNNGG 3 cut(s) 541, 906, 907
Bse1I ACTGG 2 cut(s) 687, 1090
Bse3DI GCAATG 2 cut(s) 24, 940
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 3 cut(s) 428, 452, 460
BseGI GGATG 4 cut(s) 472, 571, 1010, 1102
BseLI CCNNNNNNNGG 3 cut(s) 541, 906, 907
BseMI GCAATG 2 cut(s) 24, 940
BseMII CTCAG 3 cut(s) 629, 642, 1062
BseNI ACTGG 2 cut(s) 687, 1090
BseRI GAGGAG 1 cut(s) 1079
BseSI GKGCMC 2 cut(s) 901, 919
BshFI GGCC 4 cut(s) 182, 431, 686, 899
BsiHKAI GWGCWC 1 cut(s) 919
BsiHKCI CYCGRG 2 cut(s) 858, 894
BsiSI CCGG 2 cut(s) 419, 476
BslFI GGGAC 2 cut(s) 474, 926
BslI CCNNNNNNNGG 3 cut(s) 541, 906, 907
BsmAI GTCTC 3 cut(s) 151, 733, 1061
BsmFI GGGAC 2 cut(s) 474, 926
BsnI GGCC 4 cut(s) 182, 431, 686, 899
BsoBI CYCGRG 2 cut(s) 858, 894
Bsp120I GGGCCC 1 cut(s) 897
Bsp1286I GDGCHC 4 cut(s) 241, 901, 919, 928
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 4 cut(s) 411, 625, 728, 1079
BspACI CCGC 5 cut(s) 183, 383, 463, 639, 703
BspANI GGCC 4 cut(s) 182, 431, 686, 899
BspCNI CTCAG 3 cut(s) 628, 643, 1063
BspEI TCCGGA 1 cut(s) 475
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 2 cut(s) 899, 900
BspPI GGATC 3 cut(s) 406, 633, 1087
BsrDI GCAATG 2 cut(s) 24, 940
BsrI ACTGG 2 cut(s) 687, 1090
BssMI GATC 4 cut(s) 411, 625, 728, 1079
BssNI GRCGYC 1 cut(s) 456
Bst2UI CCWGG 3 cut(s) 428, 452, 460
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 4 cut(s) 502, 555, 729, 984
BstACI GRCGYC 1 cut(s) 456
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 6 cut(s) 707, 711, 756, 855, 1091, 1103
BstDEI CTNAG 3 cut(s) 615, 651, 1071
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 4 cut(s) 472, 571, 1010, 1102
BstHHI GCGC 2 cut(s) 175, 228
BstKTI GATC 4 cut(s) 414, 628, 731, 1082
BstMAI GTCTC 3 cut(s) 151, 733, 1061
BstMBI GATC 4 cut(s) 411, 625, 728, 1079
BstNI CCWGG 3 cut(s) 428, 452, 460
BstNSI RCATGY 4 cut(s) 516, 786, 881, 1093
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 4 cut(s) 418, 426, 450, 458
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 2 cut(s) 901, 919
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 1079
BstYI RGATCY 1 cut(s) 1079
BsuRI GGCC 4 cut(s) 182, 431, 686, 899
BtsCI GGATG 4 cut(s) 472, 571, 1010, 1102
BtsI GCAGTG 1 cut(s) 626
BtsIMutI CAGTG 2 cut(s) 626, 680
Cac8I GCNNGC 6 cut(s) 707, 711, 756, 855, 1091, 1103
CaiI CAGNNNCTG 1 cut(s) 682
CciI TCATGA 1 cut(s) 952
CfoI GCGC 2 cut(s) 175, 228
Cfr13I GGNCC 2 cut(s) 897, 898
CseI GACGC 3 cut(s) 224, 464, 518
Csp6I GTAC 2 cut(s) 448, 965
CviAII CATG 8 cut(s) 513, 536, 598, 783, 878, 953, 974, 1090
CviQI GTAC 2 cut(s) 448, 965
DdeI CTNAG 3 cut(s) 615, 651, 1071
DpnI GATC 4 cut(s) 413, 627, 730, 1081
DpnII GATC 4 cut(s) 411, 625, 728, 1079
Eam1104I CTCTTC 4 cut(s) 502, 555, 729, 984
EarI CTCTTC 4 cut(s) 502, 555, 729, 984
Eco24I GRGCYC 3 cut(s) 241, 901, 928
Eco57I CTGAAG 2 cut(s) 579, 1065
Eco88I CYCGRG 2 cut(s) 858, 894
Eco91I GGTNACC 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 898
EcoO65I GGTNACC 1 cut(s) 422
EcoRII CCWGG 3 cut(s) 426, 450, 458
EcoT38I GRGCYC 3 cut(s) 241, 901, 928
FaeI CATG 8 cut(s) 516, 539, 601, 786, 881, 956, 977, 1093
FalI AAGNNNNNCTT 2 cut(s) 726, 758
FaqI GGGAC 2 cut(s) 474, 926
FatI CATG 8 cut(s) 512, 535, 597, 782, 877, 952, 973, 1089
FauI CCCGC 3 cut(s) 390, 456, 710
FokI GGATG 4 cut(s) 459, 578, 1017, 1109
FriOI GRGCYC 3 cut(s) 241, 901, 928
GlaI GCGC 2 cut(s) 174, 227
HaeIII GGCC 4 cut(s) 182, 431, 686, 899
HapII CCGG 2 cut(s) 419, 476
HgaI GACGC 3 cut(s) 224, 464, 518
HhaI GCGC 2 cut(s) 175, 228
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 8 cut(s) 516, 539, 601, 786, 881, 956, 977, 1093
Hin6I GCGC 2 cut(s) 173, 226
HinP1I GCGC 2 cut(s) 173, 226
HinfI GANTC 4 cut(s) 573, 581, 809, 866
HpaII CCGG 2 cut(s) 419, 476
Hpy166II GTNNAC 2 cut(s) 657, 917
Hpy188I TCNGA 4 cut(s) 236, 586, 733, 1045
Hpy188III TCNNGA 6 cut(s) 476, 503, 788, 813, 943, 953
Hpy8I GTNNAC 2 cut(s) 657, 917
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 213, 502, 697
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 3 cut(s) 487, 665, 1135
HpyCH4V TGCA 4 cut(s) 439, 917, 1021, 1093
HpyF3I CTNAG 3 cut(s) 615, 651, 1071
HpySE526I ACGT 3 cut(s) 487, 665, 1135
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 8 cut(s) 516, 539, 601, 786, 881, 956, 977, 1093
HspAI GCGC 2 cut(s) 173, 226
Kpn2I TCCGGA 1 cut(s) 475
Kzo9I GATC 4 cut(s) 411, 625, 728, 1079
LweI GCATC 3 cut(s) 76, 103, 591
MaeII ACGT 3 cut(s) 487, 665, 1135
MaeIII GTNAC 4 cut(s) 48, 422, 522, 867
MalI GATC 4 cut(s) 413, 627, 730, 1081
MboI GATC 4 cut(s) 411, 625, 728, 1079
MboII GAAGA 9 cut(s) 17, 341, 489, 518, 572, 746, 782, 1001, 1058
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 1 cut(s) 1079
MhlI GDGCHC 4 cut(s) 241, 901, 919, 928
MluCI AATT 6 cut(s) 149, 340, 722, 791, 837, 1118
MlyI GAGTC 2 cut(s) 575, 875
MmeI TCCRAC 5 cut(s) 231, 274, 291, 385, 1093
MnlI CCTC 5 cut(s) 251, 399, 547, 556, 1057
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 1050
MseI TTAA 2 cut(s) 794, 1138
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 2 cut(s) 419, 476
MspR9I CCNGG 4 cut(s) 420, 428, 452, 460
MunI CAATTG 1 cut(s) 837
MvaI CCWGG 3 cut(s) 428, 452, 460
NciI CCSGG 1 cut(s) 420
NdeII GATC 4 cut(s) 411, 625, 728, 1079
NlaIII CATG 8 cut(s) 516, 539, 601, 786, 881, 956, 977, 1093
NlaIV GGNNCC 2 cut(s) 899, 900
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 1 cut(s) 867
NspI RCATGY 4 cut(s) 516, 786, 881, 1093
PaeI GCATGC 1 cut(s) 1093
PagI TCATGA 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 1050
PfeI GAWTC 2 cut(s) 573, 809
PflMI CCANNNNNTGG 1 cut(s) 541
PleI GAGTC 2 cut(s) 575, 874
PpsI GAGTC 2 cut(s) 575, 874
Psp1406I AACGTT 1 cut(s) 665
Psp6I CCWGG 3 cut(s) 426, 450, 458
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 3 cut(s) 426, 450, 458
PspN4I GGNNCC 2 cut(s) 899, 900
PspOMI GGGCCC 1 cut(s) 897
PspPI GGNCC 2 cut(s) 897, 898
PstNI CAGNNNCTG 1 cut(s) 682
PsuI RGATCY 1 cut(s) 1079
RsaI GTAC 2 cut(s) 449, 966
RsaNI GTAC 2 cut(s) 448, 965
SaqAI TTAA 2 cut(s) 794, 1138
Sau3AI GATC 4 cut(s) 411, 625, 728, 1079
Sau96I GGNCC 2 cut(s) 897, 898
SchI GAGTC 2 cut(s) 575, 875
ScrFI CCNGG 4 cut(s) 420, 428, 452, 460
SduI GDGCHC 4 cut(s) 241, 901, 919, 928
SfaNI GCATC 3 cut(s) 76, 103, 591
SfcI CTRYAG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 927
SmoI CTYRAG 1 cut(s) 927
SphI GCATGC 1 cut(s) 1093
Sse9I AATT 6 cut(s) 149, 340, 722, 791, 837, 1118
SsiI CCGC 5 cut(s) 183, 383, 463, 639, 703
StyD4I CCNGG 4 cut(s) 418, 426, 450, 458
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 3 cut(s) 490, 668, 1138
TaqI TCGA 3 cut(s) 213, 504, 826
TaqII GACCGA 1 cut(s) 585
TasI AATT 6 cut(s) 149, 340, 722, 791, 837, 1118
TatI WGTACW 1 cut(s) 964
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 2 cut(s) 573, 809
Tru1I TTAA 2 cut(s) 794, 1138
Tru9I TTAA 2 cut(s) 794, 1138
TscAI CASTG 2 cut(s) 626, 687
TseFI GTSAC 1 cut(s) 867
Tsp45I GTSAC 1 cut(s) 867
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 626, 687
Van91I CCANNNNNTGG 1 cut(s) 541
VneI GTGCAC 1 cut(s) 915
XapI RAATTY 2 cut(s) 722, 1118
XceI RCATGY 4 cut(s) 516, 786, 881, 1093
XmnI GAANNNNTTC 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.