Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007881

Physical Location & Seq

Genomic Coordinates Forward (+)

27718147 .. 27721066

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAAGATGAGAAGGCATTGCAGCAGCAGCAACTATTGCTACAGCAGCAACAACAGCAACAGCAACAAAACCAACAGCATCAACAGCAACAGTTATTGCTCCTGCAACAACTGCAAAGGCAACAGCAACAAGCCCAACAGGCCGCTGCCATTTCCCGTTTCCCTTCCAACATCGATGCCCATTTGCGCCCACTCCGACCCATCAATCTCCACCCTAACCCTAATTCCGCTCCTAATCTCCAACAAAATCCTGTTGCAAACCCACGGCAACAGCAGCAGCAGCCCCAACAGCCCCAACAACAGCAGCAGCAGCAGCAACAGCAGAGGGTGATCCGACCCGGGAACCAGGCGGAGCTACAGATGGCGTACCAGGACGCCTGGCGGGTCTGCCATCCCGATTTCAAGCGTCCCTTCTCTTCCCTCGAAGACGCCTGCGAGAGGTTGCTGCCTTATCATGTAGTGGCAGATTATGAGGCAGAGGAGGATGACAGAATCCTTGACTCTGACACCACAGGCCTGATTCCATCTCGCTCTCAGCAGTGGGATCACAACATATCTTCTAAAGTTGCAGAGTTTACCGCAACATTTGAGAAACAAGCACTAGCCTTTAACATAATTTCCCGTAAGCGAGCTTTAGGGGAATTTCGGTCTGAAGAGAGACTTATGATTGAGCAGGCACTTTGCCAAGAAGAAAAAAGGACATGTCTGGAATTGAAAGCAGAGTTTGATTCAAGAGAGAAAGCTGGCCGGGAAGCTAAATTACGAGCTCAGGCAGAGCAAGCTCGGGTTGAGTCGCAAGCACATGCTGAAATGTTAGCTCGGGCCCCAATAAGGGCAAGTGCACTTGGGTCTGAAGGCAATGACGTTTCGATTGGGCACGACATGAGAGAGCAGGAGCATGGGGTTAACCCAGAAGAGATGATAAATGGATGGGGAAATAATGTGCAAAGAGATGAGAAGGAACCATGTGAGGATTTTTTAAATGATGAAGAGACTGAGAATGGATCCACGGGCATGCAGGACGGCTGGCGTGAAGTTGGGGAGTTTGATTTGAACACTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTSCR1

Protein Analysis

355

Amino Acids

40.86

Weight (kDa)

5.0

Isoelectric Point (pI)

73.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17510 AT5G17510
fragaria_vesca	FvH4_7g34300 FvH4_7g34300
malus_domestica	MD01G1239600.v1.1
prunus_persica	Prupe.2G329500_v2.0.a1
pyrus_communis	pycom07g28390
rosa_chinensis	RchiOBHm_Chr1g0384691
rosa_laevigata	RLG00000026015
rosa_multiflora	Rmu_sc0003829.1_g000048 Rmu_sc0003829.1_g000049 Rmu_sc0014575.1_g000001 Rmu_sc0014575.1_g000002 Rmu_sc0032400.1_g000001 Rmu_sc0032400.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276450 Rroxscaffold_7G00217990
rosa_rugosa	Rorug01G0450800
rosa_samantha	Rh1AG475300 Rh1BG433500 Rh1CG447000 Rh1DG466000 Rh6BG009800
rosa_wichuraiana	Rw1G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	230
AciI	CCGC	5 cut(s)	144, 228, 350, 382, 579
AclWI	GGATC	4 cut(s)	325, 552, 999, 1012
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	1 cut(s)	641
AcuI	CTGAAG	2 cut(s)	672, 873
AcyI	GRCGYC	2 cut(s)	375, 429
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	3 cut(s)	438, 831, 832
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	403, 715, 732, 1054
AjnI	CCWGG	3 cut(s)	345, 369, 377
AluBI	AGCT	7 cut(s)	355, 632, 743, 755, 767, 782, 818
AluI	AGCT	7 cut(s)	355, 632, 743, 755, 767, 782, 818
Alw21I	GWGCWC	2 cut(s)	769, 844
Alw26I	GTCTC	2 cut(s)	652, 986
Alw44I	GTGCAC	1 cut(s)	840
AlwI	GGATC	4 cut(s)	325, 552, 999, 1012
Ama87I	CYCGRG	3 cut(s)	338, 783, 819
AoxI	GGCC	4 cut(s)	141, 514, 745, 822
ApaI	GGGCCC	1 cut(s)	826
ApaLI	GTGCAC	1 cut(s)	840
ApoI	RAATTY	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	822, 823
AsuC2I	CCSGG	3 cut(s)	339, 340, 749
AsuHPI	GGTGA	1 cut(s)	340
AvaI	CYCGRG	3 cut(s)	338, 783, 819
BaeGI	GKGCMC	3 cut(s)	826, 844, 879
BamHI	GGATCC	1 cut(s)	1004
BanII	GRGCYC	2 cut(s)	769, 826
BarI	GAAGNNNNNNTAC	2 cut(s)	744, 776
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	769, 844
BccI	CCATC	5 cut(s)	209, 355, 399, 532, 924
BceAI	ACGGC	2 cut(s)	281, 1039
BciT130I	CCWGG	3 cut(s)	347, 371, 379
BcnI	CCSGG	3 cut(s)	339, 340, 749
BcoDI	GTCTC	2 cut(s)	652, 986
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	2 cut(s)	41, 356
BglI	GCCNNNNNGGC	1 cut(s)	140
Bme1390I	CCNGG	6 cut(s)	339, 340, 347, 371, 379, 749
BmeT110I	CYCGRG	3 cut(s)	338, 783, 819
BmgT120I	GGNCC	2 cut(s)	822, 823
BmiI	GGNNCC	5 cut(s)	344, 824, 825, 963, 1006
BmrFI	CCNGG	6 cut(s)	339, 340, 347, 371, 379, 749
BmsI	GCATC	2 cut(s)	88, 166
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	768
BpuMI	CCSGG	3 cut(s)	339, 340, 749
Bsa29I	ATCGAT	1 cut(s)	174
BsaHI	GRCGYC	2 cut(s)	375, 429
BsaJI	CCNNGG	3 cut(s)	263, 338, 1008
Bsc4I	CCNNNNNNNGG	3 cut(s)	438, 831, 832
Bse3DI	GCAATG	2 cut(s)	17, 865
BseBI	CCWGG	3 cut(s)	347, 371, 379
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	263, 338, 1008
BseGI	GGATG	3 cut(s)	391, 490, 935
BseLI	CCNNNNNNNGG	3 cut(s)	438, 831, 832
BseMI	GCAATG	2 cut(s)	17, 865
BseMII	CTCAG	3 cut(s)	548, 782, 987
BseRI	GAGGAG	1 cut(s)	494
BseSI	GKGCMC	3 cut(s)	826, 844, 879
BshFI	GGCC	4 cut(s)	143, 516, 747, 824
BshVI	ATCGAT	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	769, 844
BsiHKCI	CYCGRG	3 cut(s)	338, 783, 819
BsiSI	CCGG	2 cut(s)	339, 748
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	3 cut(s)	438, 831, 832
BsmAI	GTCTC	2 cut(s)	652, 986
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	4 cut(s)	143, 516, 747, 824
BsoBI	CYCGRG	3 cut(s)	338, 783, 819
Bsp120I	GGGCCC	1 cut(s)	822
Bsp1286I	GDGCHC	4 cut(s)	769, 826, 844, 879
Bsp143I	GATC	3 cut(s)	330, 544, 1004
BspACI	CCGC	5 cut(s)	144, 228, 350, 382, 579
BspANI	GGCC	4 cut(s)	143, 516, 747, 824
BspCNI	CTCAG	3 cut(s)	547, 781, 988
BspDI	ATCGAT	1 cut(s)	174
BspLI	GGNNCC	5 cut(s)	344, 824, 825, 963, 1006
BspPI	GGATC	4 cut(s)	325, 552, 999, 1012
BsrBI	CCGCTC	1 cut(s)	230
BsrDI	GCAATG	2 cut(s)	17, 865
BssECI	CCNNGG	3 cut(s)	263, 338, 1008
BssMI	GATC	3 cut(s)	330, 544, 1004
BssNI	GRCGYC	2 cut(s)	375, 429
Bst2UI	CCWGG	3 cut(s)	347, 371, 379
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	4 cut(s)	421, 648, 909, 984
BstACI	GRCGYC	2 cut(s)	375, 429
BstAPI	GCANNNNNTGC	2 cut(s)	37, 112
BstC8I	GCNNGC	8 cut(s)	433, 630, 675, 745, 780, 798, 1016, 1028
BstDEI	CTNAG	3 cut(s)	534, 768, 996
BstDSI	CCRYGG	2 cut(s)	263, 1008
BstENI	CCTNNNNNAGG	1 cut(s)	436
BstF5I	GGATG	3 cut(s)	391, 490, 935
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	3 cut(s)	333, 547, 1007
BstMAI	GTCTC	2 cut(s)	652, 986
BstMBI	GATC	3 cut(s)	330, 544, 1004
BstNI	CCWGG	3 cut(s)	347, 371, 379
BstNSI	RCATGY	3 cut(s)	705, 806, 1018
BstSCI	CCNGG	6 cut(s)	337, 338, 345, 369, 377, 747
BstSFI	CTRYAG	2 cut(s)	41, 356
BstSLI	GKGCMC	3 cut(s)	826, 844, 879
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	1004
BstYI	RGATCY	1 cut(s)	1004
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	4 cut(s)	143, 516, 747, 824
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	2 cut(s)	263, 1008
BtsCI	GGATG	3 cut(s)	391, 490, 935
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	1 cut(s)	545
Cac8I	GCNNGC	8 cut(s)	433, 630, 675, 745, 780, 798, 1016, 1028
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	822, 823
Cfr9I	CCCGGG	1 cut(s)	338
ClaI	ATCGAT	1 cut(s)	174
CseI	GACGC	3 cut(s)	383, 395, 437
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	7 cut(s)	455, 702, 803, 883, 899, 966, 1015
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	3 cut(s)	534, 768, 996
DpnI	GATC	3 cut(s)	332, 546, 1006
DpnII	GATC	3 cut(s)	330, 544, 1004
DraI	TTTAAA	1 cut(s)	981
EaeI	YGGCCR	1 cut(s)	745
Eam1104I	CTCTTC	4 cut(s)	421, 648, 909, 984
EarI	CTCTTC	4 cut(s)	421, 648, 909, 984
EciI	GGCGGA	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	767
Eco147I	AGGCCT	1 cut(s)	516
Eco24I	GRGCYC	2 cut(s)	769, 826
Eco53kI	GAGCTC	1 cut(s)	767
Eco57I	CTGAAG	2 cut(s)	672, 873
Eco88I	CYCGRG	3 cut(s)	338, 783, 819
EcoICRI	GAGCTC	1 cut(s)	767
EcoNI	CCTNNNNNAGG	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	823
EcoRII	CCWGG	3 cut(s)	345, 369, 377
EcoT38I	GRGCYC	2 cut(s)	769, 826
FaeI	CATG	7 cut(s)	458, 705, 806, 886, 902, 969, 1018
FalI	AAGNNNNNCTT	4 cut(s)	395, 427, 645, 677
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	7 cut(s)	454, 701, 802, 882, 898, 965, 1014
FauI	CCCGC	1 cut(s)	375
FokI	GGATG	3 cut(s)	378, 497, 942
FriOI	GRGCYC	2 cut(s)	769, 826
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	188
HaeIII	GGCC	4 cut(s)	143, 516, 747, 824
HapII	CCGG	2 cut(s)	339, 748
HgaI	GACGC	3 cut(s)	383, 395, 437
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	2 cut(s)	375, 429
Hin1II	CATG	7 cut(s)	458, 705, 806, 886, 902, 969, 1018
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HinfI	GANTC	5 cut(s)	492, 500, 520, 728, 791
HpaI	GTTAAC	1 cut(s)	907
HpaII	CCGG	2 cut(s)	339, 748
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	3 cut(s)	576, 842, 907
Hpy188I	TCNGA	5 cut(s)	197, 335, 505, 652, 853
Hpy188III	TCNNGA	3 cut(s)	395, 707, 732
Hpy8I	GTNNAC	3 cut(s)	576, 842, 907
HpyAV	CCTTC	5 cut(s)	7, 174, 421, 848, 952
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	8 cut(s)	22, 106, 115, 257, 569, 842, 946, 1018
HpyF3I	CTNAG	3 cut(s)	534, 768, 996
HpySE526I	ACGT	1 cut(s)	864
Hsp92I	GRCGYC	2 cut(s)	375, 429
Hsp92II	CATG	7 cut(s)	458, 705, 806, 886, 902, 969, 1018
HspAI	GCGC	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	907
Kzo9I	GATC	3 cut(s)	330, 544, 1004
LmnI	GCTCC	4 cut(s)	105, 235, 352, 895
LweI	GCATC	2 cut(s)	88, 166
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	864
MalI	GATC	3 cut(s)	332, 546, 1006
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	3 cut(s)	330, 544, 1004
MboII	GAAGA	8 cut(s)	17, 408, 437, 549, 665, 701, 926, 1001
MflI	RGATCY	1 cut(s)	1004
MhlI	GDGCHC	4 cut(s)	769, 826, 844, 879
MluCI	AATT	5 cut(s)	223, 615, 641, 710, 758
MlyI	GAGTC	2 cut(s)	494, 800
MmeI	TCCRAC	4 cut(s)	192, 220, 265, 358
MnlI	CCTC	7 cut(s)	318, 431, 432, 466, 472, 475, 964
MseI	TTAA	4 cut(s)	609, 906, 980, 1063
MslI	CAYNNNNRTG	1 cut(s)	1013
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	2 cut(s)	339, 748
MspR9I	CCNGG	6 cut(s)	339, 340, 347, 371, 379, 749
MvaI	CCWGG	3 cut(s)	347, 371, 379
NciI	CCSGG	3 cut(s)	339, 340, 749
NdeII	GATC	3 cut(s)	330, 544, 1004
NlaIII	CATG	7 cut(s)	458, 705, 806, 886, 902, 969, 1018
NlaIV	GGNNCC	5 cut(s)	344, 824, 825, 963, 1006
NspI	RCATGY	3 cut(s)	705, 806, 1018
PaeI	GCATGC	1 cut(s)	1018
PceI	AGGCCT	1 cut(s)	516
PciI	ACATGT	1 cut(s)	701
PfeI	GAWTC	3 cut(s)	492, 520, 728
PleI	GAGTC	2 cut(s)	494, 799
PpsI	GAGTC	2 cut(s)	494, 799
PscI	ACATGT	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	769
Psp6I	CCWGG	3 cut(s)	345, 369, 377
PspGI	CCWGG	3 cut(s)	345, 369, 377
PspN4I	GGNNCC	5 cut(s)	344, 824, 825, 963, 1006
PspOMI	GGGCCC	1 cut(s)	822
PspPI	GGNCC	2 cut(s)	822, 823
PsuI	RGATCY	1 cut(s)	1004
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	1013
SacI	GAGCTC	1 cut(s)	769
SaqAI	TTAA	4 cut(s)	609, 906, 980, 1063
Sau3AI	GATC	3 cut(s)	330, 544, 1004
Sau96I	GGNCC	2 cut(s)	822, 823
SchI	GAGTC	2 cut(s)	494, 800
ScrFI	CCNGG	6 cut(s)	339, 340, 347, 371, 379, 749
SduI	GDGCHC	4 cut(s)	769, 826, 844, 879
SetI	ASST	9 cut(s)	357, 443, 634, 745, 757, 769, 784, 820, 867
SfaNI	GCATC	2 cut(s)	88, 166
SfcI	CTRYAG	2 cut(s)	41, 356
SmaI	CCCGGG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	1013
SphI	GCATGC	1 cut(s)	1018
Sse9I	AATT	5 cut(s)	223, 615, 641, 710, 758
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	5 cut(s)	144, 228, 350, 382, 579
SspMI	CTAG	1 cut(s)	602
SstI	GAGCTC	1 cut(s)	769
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	6 cut(s)	337, 338, 345, 369, 377, 747
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	3 cut(s)	174, 423, 869
TaqII	GACCGA	1 cut(s)	636
TasI	AATT	5 cut(s)	223, 615, 641, 710, 758
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	3 cut(s)	492, 520, 728
Tru1I	TTAA	4 cut(s)	609, 906, 980, 1063
Tru9I	TTAA	4 cut(s)	609, 906, 980, 1063
TscAI	CASTG	1 cut(s)	545
TspDTI	ATGAA	1 cut(s)	1002
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	1 cut(s)	545
VneI	GTGCAC	1 cut(s)	840
XagI	CCTNNNNNAGG	1 cut(s)	436
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	3 cut(s)	705, 806, 1018
XmaI	CCCGGG	1 cut(s)	338
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.