AT5G17670

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010138
Physical Location & Seq
Forward (+)
5820969 .. 5822736
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17670.1

Sequence Viewer

Length: 930 bp
ATGGCCTCGGCGATGGTTACATCGCTCAGGCTGAGGCCAAACTTCTCCGCAGCCACGTCACCCTCCTCCTCTTCTTCCGCCGGAAATGTCAAGTACCGACCCGCCGTAATTCTCCCGGGTTTAGGGAATAATACAGGAGACTACAAGAAGCTGGAGGTAACATTGGGTGAATACGGTGTTCCTGCTGTGGTTGCAGCTGTATCAAGGCTTGATTGGTTTAGAAATGCAGCCGGTTTGGTTGATCCAGCCTACTGGCGTGGCACGCTCCGCCCTCGTCCTGTTCTTGATTGGTACTTGAATAGAATTGATGATGCAGTCCGTGAAGCCAATGAGCTAGCTCAAGGTCAAGGATTGTGTTTGATTGGACACTCAGCTGGAGGATGGCTTGCTCGAGTTTACATGGAAGAATACGGAAACTCTGATATCTCCTTGTTGTTGACACTTGGTACGCCTCACTTACCACCACCGAGAGGACTTCCGGGGGTTATTGATCAAACAAGAGGTCTTCTCTATTATGTCGAAGAGAATTGTGCAAAAGCTGTTTACACTCCTGAGCTGAAATATGTCTGTATCGCCGGGAGATACATTCGTGGAGCTCGTTTGGTTGACAATGCAGATGCAGATATTGATTCTGATGTAACTGTTGGAATCGACAGTGGAGAAGGGATTTCAGAACTTGCTATAGCAAGCAACAAGAAGAGTGGTACTTTCCGTGCTCGTTTTGTAGGGCAAGGATACAAGCAAGTATGTGGAAGAGCTGATGTGTGGGGTGATGGAGTAGTTCCTGAGGTTTCAGCTCATCTTGAAGGTGCACTTAATGTTAGCTTCGACGGTGTTTACCATTCACCTGTTGGTTCAGACGATGAAACCAGACCTTGGTATGGCTCACCGGTTATTGTAAAGGACTGGATTCACCACCTCCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGAP1

Protein Analysis

309

Amino Acids

33.41

Weight (kDa)

5.58

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGAP1 PF07819 109 - 157 2.3e-06 PGAP1-like alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 876
AciI CCGC 4 cut(s) 48, 78, 102, 268
AclWI GGATC 1 cut(s) 236
AfaI GTAC 4 cut(s) 95, 293, 448, 706
AfiI CCNNNNNNNGG 4 cut(s) 122, 470, 876, 881
AgeI ACCGGT 1 cut(s) 889
AgsI TTSAA 2 cut(s) 298, 806
AjiI CACGTC 1 cut(s) 57
Alw21I GWGCWC 3 cut(s) 598, 718, 814
Alw26I GTCTC 1 cut(s) 132
Alw44I GTGCAC 1 cut(s) 810
AlwI GGATC 1 cut(s) 236
Ama87I CYCGRG 2 cut(s) 115, 390
AoxI GGCC 2 cut(s) 3, 35
ApaLI GTGCAC 1 cut(s) 810
ApeKI GCWGC 3 cut(s) 50, 194, 227
ArsI GACNNNNNNTTYG 2 cut(s) 487, 519
AsiGI ACCGGT 1 cut(s) 889
AsuC2I CCSGG 4 cut(s) 116, 117, 480, 577
AsuHPI GGTGA 6 cut(s) 51, 179, 782, 837, 879, 905
AsuNHI GCTAGC 1 cut(s) 334
AvaI CYCGRG 2 cut(s) 115, 390
AxyI CCTNAGG 1 cut(s) 786
BaeGI GKGCMC 1 cut(s) 814
BaeI ACNNNNGTAYC 2 cut(s) 574, 607
BanII GRGCYC 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 3 cut(s) 598, 718, 814
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 62, 206, 239
BccI CCATC 3 cut(s) 7, 375, 767
BceAI ACGGC 1 cut(s) 89
BciVI GTATCC 1 cut(s) 728
BclI TGATCA 1 cut(s) 490
BcnI CCSGG 4 cut(s) 116, 117, 480, 577
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 681
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 3 cut(s) 51, 195, 228
BlsI GCNGC 3 cut(s) 52, 196, 229
Bme1390I CCNGG 4 cut(s) 116, 117, 480, 577
BmeT110I CYCGRG 2 cut(s) 115, 390
BmgBI CACGTC 1 cut(s) 57
BmrFI CCNGG 4 cut(s) 116, 117, 480, 577
BmsI GCATC 2 cut(s) 301, 607
BmtI GCTAGC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 497
BplI GAGNNNNNCTC 2 cut(s) 492, 524
BpmI CTGGAG 2 cut(s) 173, 396
Bpu10I CCTNAGC 3 cut(s) 26, 32, 552
BpuEI CTTGAG 1 cut(s) 324
BpuMI CCSGG 4 cut(s) 116, 117, 480, 577
BsaJI CCNNGG 4 cut(s) 6, 115, 479, 875
BsaWI WCCGGW 1 cut(s) 889
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 470, 876, 881
Bse118I RCCGGY 2 cut(s) 230, 889
Bse1I ACTGG 2 cut(s) 257, 911
Bse21I CCTNAGG 1 cut(s) 786
BseDI CCNNGG 4 cut(s) 6, 115, 479, 875
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 4 cut(s) 122, 470, 876, 881
BseMII CTCAG 5 cut(s) 23, 40, 384, 543, 777
BseNI ACTGG 2 cut(s) 257, 911
BseRI GAGGAG 2 cut(s) 55, 58
BseSI GKGCMC 1 cut(s) 814
BseXI GCAGC 3 cut(s) 62, 206, 239
BshFI GGCC 2 cut(s) 5, 37
BshTI ACCGGT 1 cut(s) 889
BsiHKAI GWGCWC 3 cut(s) 598, 718, 814
BsiHKCI CYCGRG 2 cut(s) 115, 390
BsiSI CCGG 6 cut(s) 81, 116, 231, 479, 576, 890
BslI CCNNNNNNNGG 4 cut(s) 122, 470, 876, 881
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 2 cut(s) 5, 37
BsoBI CYCGRG 2 cut(s) 115, 390
Bsp1286I GDGCHC 3 cut(s) 598, 718, 814
Bsp143I GATC 2 cut(s) 241, 490
BspACI CCGC 4 cut(s) 48, 78, 102, 268
BspANI GGCC 2 cut(s) 5, 37
BspCNI CTCAG 5 cut(s) 24, 39, 383, 544, 778
BspOI GCTAGC 1 cut(s) 338
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 748
BsrFI RCCGGY 2 cut(s) 230, 889
BsrI ACTGG 2 cut(s) 257, 911
BssAI RCCGGY 2 cut(s) 230, 889
BssECI CCNNGG 4 cut(s) 6, 115, 479, 875
BssMI GATC 2 cut(s) 241, 490
BssT1I CCWWGG 1 cut(s) 875
Bst4CI ACNGT 4 cut(s) 176, 643, 656, 833
Bst6I CTCTTC 4 cut(s) 76, 516, 692, 748
BstC8I GCNNGC 4 cut(s) 263, 336, 387, 688
BstDEI CTNAG 5 cut(s) 26, 32, 370, 552, 786
BstF5I GGATG 1 cut(s) 386
BstKTI GATC 2 cut(s) 244, 493
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 241, 490
BstMWI GCNNNNNNNGC 3 cut(s) 191, 262, 267
BstSCI CCNGG 4 cut(s) 114, 115, 478, 575
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 814
BstV1I GCAGC 3 cut(s) 62, 206, 239
BstV2I GAAGAC 1 cut(s) 497
BstXI CCANNNNNNTGG 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 786
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 2 cut(s) 5, 37
BtgZI GCGATG 2 cut(s) 6, 26
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 661
Cac8I GCNNGC 4 cut(s) 263, 336, 387, 688
Cfr10I RCCGGY 2 cut(s) 230, 889
Cfr9I CCCGGG 1 cut(s) 115
Csp6I GTAC 4 cut(s) 94, 292, 447, 705
CspAI ACCGGT 1 cut(s) 889
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 1 cut(s) 400
CviQI GTAC 4 cut(s) 94, 292, 447, 705
DdeI CTNAG 5 cut(s) 26, 32, 370, 552, 786
DpnI GATC 2 cut(s) 243, 492
DpnII GATC 2 cut(s) 241, 490
Eam1104I CTCTTC 4 cut(s) 76, 516, 692, 748
EarI CTCTTC 4 cut(s) 76, 516, 692, 748
EciI GGCGGA 2 cut(s) 67, 257
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 875
Eco24I GRGCYC 1 cut(s) 598
Eco32I GATATC 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 596
Eco81I CCTNAGG 1 cut(s) 786
Eco88I CYCGRG 2 cut(s) 115, 390
EcoICRI GAGCTC 1 cut(s) 596
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 875
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 875
FaeI CATG 1 cut(s) 403
FaiI YATR 6 cut(s) 401, 516, 564, 683, 748, 882
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FatI CATG 1 cut(s) 399
FauI CCCGC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 51, 195, 228
FokI GGATG 1 cut(s) 393
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 3 cut(s) 51, 195, 228
FspBI CTAG 1 cut(s) 335
GluI GCNGC 3 cut(s) 51, 195, 228
GsuI CTGGAG 2 cut(s) 173, 396
HaeIII GGCC 2 cut(s) 5, 37
HapII CCGG 6 cut(s) 81, 116, 231, 479, 576, 890
Hin1II CATG 1 cut(s) 403
HincII GTYRAC 2 cut(s) 438, 607
HindII GTYRAC 2 cut(s) 438, 607
HinfI GANTC 3 cut(s) 629, 648, 910
HpaII CCGG 6 cut(s) 81, 116, 231, 479, 576, 890
HphI GGTGA 6 cut(s) 51, 179, 782, 837, 879, 905
Hpy166II GTNNAC 6 cut(s) 397, 438, 544, 607, 812, 838
Hpy188I TCNGA 4 cut(s) 421, 634, 673, 859
Hpy188III TCNNGA 4 cut(s) 284, 551, 785, 803
Hpy8I GTNNAC 6 cut(s) 397, 438, 544, 607, 812, 838
Hpy99I CGWCG 1 cut(s) 833
HpyAV CCTTC 2 cut(s) 656, 800
HpyCH4III ACNGT 4 cut(s) 176, 643, 656, 833
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 7 cut(s) 194, 227, 314, 533, 614, 620, 812
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 262, 267
HpyF3I CTNAG 5 cut(s) 26, 32, 370, 552, 786
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 2 cut(s) 241, 490
LguI GCTCTTC 1 cut(s) 748
LmnI GCTCC 2 cut(s) 270, 593
Lsp1109I GCAGC 3 cut(s) 62, 206, 239
LweI GCATC 2 cut(s) 301, 607
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 4 cut(s) 16, 57, 157, 637
MalI GATC 2 cut(s) 243, 492
MboI GATC 2 cut(s) 241, 490
MboII GAAGA 7 cut(s) 63, 66, 416, 497, 533, 709, 765
MhlI GDGCHC 3 cut(s) 598, 718, 814
MluCI AATT 3 cut(s) 108, 303, 526
MmeI TCCRAC 1 cut(s) 625
MseI TTAA 1 cut(s) 816
MspA1I CMGCKG 2 cut(s) 197, 374
MspI CCGG 6 cut(s) 81, 116, 231, 479, 576, 890
MspR9I CCNGG 4 cut(s) 116, 117, 480, 577
MwoI GCNNNNNNNGC 3 cut(s) 191, 262, 267
NciI CCSGG 4 cut(s) 116, 117, 480, 577
NdeII GATC 2 cut(s) 241, 490
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 57
PaeR7I CTCGAG 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 748
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PfeI GAWTC 3 cut(s) 629, 648, 910
PflMI CCANNNNNTGG 1 cut(s) 876
PinAI ACCGGT 1 cut(s) 889
PkrI GCNGC 3 cut(s) 52, 196, 229
Psp124BI GAGCTC 1 cut(s) 598
PspXI VCTCGAGB 1 cut(s) 390
PvuII CAGCTG 2 cut(s) 197, 374
RsaI GTAC 4 cut(s) 95, 293, 448, 706
RsaNI GTAC 4 cut(s) 94, 292, 447, 705
SacI GAGCTC 1 cut(s) 598
SapI GCTCTTC 1 cut(s) 748
SaqAI TTAA 1 cut(s) 816
SatI GCNGC 3 cut(s) 51, 195, 228
Sau3AI GATC 2 cut(s) 241, 490
ScrFI CCNGG 4 cut(s) 116, 117, 480, 577
SduI GDGCHC 3 cut(s) 598, 718, 814
SfaNI GCATC 2 cut(s) 301, 607
SfcI CTRYAG 1 cut(s) 681
Sfr274I CTCGAG 1 cut(s) 390
SlaI CTCGAG 1 cut(s) 390
SmaI CCCGGG 1 cut(s) 117
SmlI CTYRAG 3 cut(s) 339, 390, 923
SmoI CTYRAG 3 cut(s) 339, 390, 923
Sse9I AATT 3 cut(s) 108, 303, 526
SsiI CCGC 4 cut(s) 48, 78, 102, 268
SspMI CTAG 1 cut(s) 335
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 4 cut(s) 114, 115, 478, 575
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 4 cut(s) 176, 643, 656, 833
TaiI ACGT 1 cut(s) 59
TaqI TCGA 4 cut(s) 391, 519, 651, 828
TasI AATT 3 cut(s) 108, 303, 526
TfiI GAWTC 3 cut(s) 629, 648, 910
Tru1I TTAA 1 cut(s) 816
Tru9I TTAA 1 cut(s) 816
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 3 cut(s) 50, 194, 227
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 879
TspGWI ACGGA 3 cut(s) 308, 426, 701
TspMI CCCGGG 1 cut(s) 115
TspRI CASTG 1 cut(s) 661
Van91I CCANNNNNTGG 1 cut(s) 876
VneI GTGCAC 1 cut(s) 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 848
XhoI CTCGAG 1 cut(s) 390
XmaI CCCGGG 1 cut(s) 115
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.