Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010138

Physical Location & Seq

Genomic Coordinates Forward (+)

31767780 .. 31770469

Gene Structure 2690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029037

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCTATGCTTCTATCACCATTGAAACCCTTGGCCTACTCCACTTCTGCATTTTGTCAAGACCCATCATCATCATACAGACCAGCTGTTCTTCTTCCAGGTTTGGGGAACAACTCAGCTGACTACAACAAGTTGGAGATTACATTGAGAGGGTATGGAGTGTCCACAGTGGTTGCTAAGGTGGCAAGAATTGATTGGCTGAGGAATGCCACCGGTTTGGTGGACCCGAATTACTGGCGGGGAACTCTCAGTCCTCGTCCTGTGCTTGATTGGTATTTGAAGAGGGTGGATGAGGCTGTAAAAGAGGCAAAGGAGCTAGCACAAGGTGGACCTTTATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGAAATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCCCACCAACCACCTCCAAAAGGTGTGTCAGGGGTTATTGATCAAACAAGGGGACTCCTGTATTATGTTGAAAAGAATTGCTCAAAAGCTGTTTACACTCCTGAACTGAAATATGTATGTATCGCTGGGAGGTATCTCCAAGGTGCTCGCTTATTTGGCAACTCAAGTGAAAGTGTTGATTCTGCAATTCCAATAGAGAGTTTAGAACCCTCATCAGAGGTTGCTGTTATAAATGATGTGAGCACTTCAACATCAACCACACCCACTTTGCGTGCACGCTTCGTGGGGCAAGGTTACAAGCAGGTTTGTGGGCAGGCAGATGTTTGGGGTGATGGAGTTGTACCAGAAGTATCAGCTCATCTGGAGGGTGCACTCAATATTAGCATAGATGGTGTTTACCACTCACCAGTTGGTTCAGATGATATCTTAAGACCATGGTATGGGTCTCCCGAAATTGTTGAGCAATGGATACATCACCTCCTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGAP1

Protein Analysis

307

Amino Acids

33.22

Weight (kDa)

5.71

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	30 - 141	5e-06	Alpha/beta hydrolase family
PGAP1	PF07819	112 - 151	3.9e-06	PGAP1-like alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17670
fragaria_vesca	FvH4_7g08340
malus_domestica	MD02G1231900.v1.1 MD07G1081500.v1.1
prunus_persica	Prupe.2G106800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340711
rosa_laevigata	RLG00000029037
rosa_multiflora	Rmu_co8436023.1_g000001 Rmu_sc0000566.1_g000056
rosa_roxburghii	Rroxscaffold_4G00311210 Rroxscaffold_4G00311270 Rroxscaffold_4G00315910
rosa_rugosa	Rorug01G0161900.1
rosa_samantha	Rh1BG145100 Rh1BG146500 Rh1CG164800 Rh1DG176700 Rh1DG178600
rosa_wichuraiana	Rw0G010010 Rw1G014610 Rw1G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	662
Acc36I	ACCTGC	1 cut(s)	724
AccB7I	CCANNNNNTGG	1 cut(s)	872
AciI	CCGC	1 cut(s)	238
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	774
AfiI	CCNNNNNNNGG	3 cut(s)	104, 452, 872
AflII	CTTAAG	1 cut(s)	859
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	25, 280, 503, 681
AjiI	CACGTC	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	97
AloI	GAACNNNNNNTCC	2 cut(s)	235, 267
AluBI	AGCT	6 cut(s)	86, 119, 316, 521, 788, 918
AluI	AGCT	6 cut(s)	86, 119, 316, 521, 788, 918
Alw21I	GWGCWC	4 cut(s)	580, 677, 709, 805
Alw26I	GTCTC	2 cut(s)	380, 882
Alw44I	GTGCAC	2 cut(s)	705, 801
AoxI	GGCC	1 cut(s)	33
ApaLI	GTGCAC	2 cut(s)	705, 801
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AsiGI	ACCGGT	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	223, 329
AsuHPI	GGTGA	4 cut(s)	9, 773, 828, 899
AsuNHI	GCTAGC	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	223, 329
BaeGI	GKGCMC	2 cut(s)	709, 805
Bbv12I	GWGCWC	4 cut(s)	580, 677, 709, 805
BbvCI	CCTCAGC	1 cut(s)	200
BccI	CCATC	4 cut(s)	73, 357, 758, 815
BciT130I	CCWGG	1 cut(s)	99
BciVI	GTATCC	1 cut(s)	894
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	380, 882
BfaI	CTAG	2 cut(s)	317, 341
BfrI	CTTAAG	1 cut(s)	859
BfuAI	ACCTGC	1 cut(s)	724
BfuI	GTATCC	1 cut(s)	894
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	2 cut(s)	223, 329
BmgBI	CACGTC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	223, 329
BmiI	GGNNCC	2 cut(s)	225, 430
BmrFI	CCNGG	1 cut(s)	99
BmtI	GCTAGC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	815
Bpu10I	CCTNAGC	3 cut(s)	177, 200, 914
BpuEI	CTTGAG	1 cut(s)	580
BsaI	GGTCTC	1 cut(s)	882
BsaJI	CCNNGG	3 cut(s)	30, 571, 866
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	1 cut(s)	894
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 452, 872
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	2 cut(s)	239, 839
Bse3DI	GCAATG	1 cut(s)	902
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	30, 571, 866
BseGI	GGATG	2 cut(s)	295, 368
BseLI	CCNNNNNNNGG	3 cut(s)	104, 452, 872
BseMI	GCAATG	1 cut(s)	902
BseMII	CTCAG	4 cut(s)	129, 191, 262, 905
BseNI	ACTGG	2 cut(s)	239, 839
BseSI	GKGCMC	2 cut(s)	709, 805
BseYI	CCCAGC	1 cut(s)	557
BshFI	GGCC	1 cut(s)	35
BshTI	ACCGGT	1 cut(s)	212
BsiHKAI	GWGCWC	4 cut(s)	580, 677, 709, 805
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	3 cut(s)	104, 452, 872
BsmAI	GTCTC	2 cut(s)	380, 882
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	1 cut(s)	498
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	882
Bsp1286I	GDGCHC	4 cut(s)	580, 677, 709, 805
Bsp143I	GATC	1 cut(s)	472
Bsp19I	CCATGG	1 cut(s)	866
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	4 cut(s)	128, 192, 261, 906
BspLI	GGNNCC	2 cut(s)	225, 430
BspMI	ACCTGC	1 cut(s)	724
BspOI	GCTAGC	1 cut(s)	320
BspTI	CTTAAG	1 cut(s)	859
BspTNI	GGTCTC	1 cut(s)	882
BsrDI	GCAATG	1 cut(s)	902
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	239, 839
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	30, 571, 866
BssMI	GATC	1 cut(s)	472
BssT1I	CCWWGG	3 cut(s)	30, 571, 866
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	275
BstAFI	CTTAAG	1 cut(s)	859
BstC8I	GCNNGC	6 cut(s)	318, 369, 580, 705, 709, 747
BstDEI	CTNAG	5 cut(s)	115, 177, 200, 248, 914
BstDSI	CCRYGG	1 cut(s)	866
BstENI	CCTNNNNNAGG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	295, 368
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	2 cut(s)	380, 882
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 588
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	2 cut(s)	709, 805
BstXI	CCANNNNNNTGG	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	894
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	866
BtrI	CACGTC	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	295, 368
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	6 cut(s)	318, 369, 580, 705, 709, 747
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	223, 329
Csp6I	GTAC	1 cut(s)	773
CspAI	ACCGGT	1 cut(s)	212
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	2 cut(s)	382, 867
CviQI	GTAC	1 cut(s)	773
DdeI	CTNAG	5 cut(s)	115, 177, 200, 248, 914
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
DraIII	CACNNNGTG	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	3 cut(s)	30, 571, 866
Eco31I	GGTCTC	1 cut(s)	882
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	2 cut(s)	223, 329
EcoNI	CCTNNNNNAGG	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	3 cut(s)	30, 571, 866
ErhI	CCWWGG	3 cut(s)	30, 571, 866
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	2 cut(s)	385, 870
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	2 cut(s)	381, 866
FauI	CCCGC	1 cut(s)	231
FbaI	TGATCA	1 cut(s)	472
FokI	GGATG	2 cut(s)	302, 375
FspBI	CTAG	2 cut(s)	317, 341
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	815
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	2 cut(s)	385, 870
HinfI	GANTC	3 cut(s)	421, 486, 611
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	4 cut(s)	9, 773, 828, 899
Hpy166II	GTNNAC	7 cut(s)	165, 223, 329, 526, 707, 803, 829
Hpy188I	TCNGA	3 cut(s)	403, 649, 850
Hpy188III	TCNNGA	5 cut(s)	59, 533, 794, 881, 913
Hpy8I	GTNNAC	7 cut(s)	165, 223, 329, 526, 707, 803, 829
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	5 cut(s)	50, 371, 617, 707, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 588
HpyF3I	CTNAG	5 cut(s)	115, 177, 200, 248, 914
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	385, 870
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	317, 341
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	4 cut(s)	83, 86, 292, 398
MhlI	GDGCHC	4 cut(s)	580, 677, 709, 805
MluCI	AATT	5 cut(s)	189, 229, 508, 618, 885
MlyI	GAGTC	2 cut(s)	415, 480
MmeI	TCCRAC	2 cut(s)	114, 325
MseI	TTAA	1 cut(s)	860
MspA1I	CMGCKG	2 cut(s)	86, 119
MspCI	CTTAAG	1 cut(s)	859
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	182, 588
NcoI	CCATGG	1 cut(s)	866
NdeII	GATC	1 cut(s)	472
NheI	GCTAGC	1 cut(s)	316
NlaIII	CATG	2 cut(s)	385, 870
NlaIV	GGNNCC	2 cut(s)	225, 430
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	611
PflMI	CCANNNNNTGG	1 cut(s)	872
PinAI	ACCGGT	1 cut(s)	212
PleI	GAGTC	2 cut(s)	415, 480
PpsI	GAGTC	2 cut(s)	415, 480
PsiI	TTATAA	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	225, 430
PspPI	GGNCC	2 cut(s)	223, 329
PvuII	CAGCTG	2 cut(s)	86, 119
RsaI	GTAC	1 cut(s)	774
RsaNI	GTAC	1 cut(s)	773
SaqAI	TTAA	1 cut(s)	860
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	2 cut(s)	223, 329
SchI	GAGTC	2 cut(s)	415, 480
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	4 cut(s)	580, 677, 709, 805
SinI	GGWCC	2 cut(s)	223, 329
SmlI	CTYRAG	2 cut(s)	595, 859
SmoI	CTYRAG	2 cut(s)	595, 859
Sse9I	AATT	5 cut(s)	189, 229, 508, 618, 885
SsiI	CCGC	1 cut(s)	238
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	2 cut(s)	317, 341
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	3 cut(s)	30, 571, 866
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	376
TasI	AATT	5 cut(s)	189, 229, 508, 618, 885
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	1 cut(s)	860
Tru9I	TTAA	1 cut(s)	860
TscAI	CASTG	1 cut(s)	174
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	872
Vha464I	CTTAAG	1 cut(s)	859
VneI	GTGCAC	2 cut(s)	705, 801
VpaK11BI	GGWCC	2 cut(s)	223, 329
XagI	CCTNNNNNAGG	1 cut(s)	450
XcmI	CCANNNNNNNNNTGG	2 cut(s)	217, 839
XspI	CTAG	2 cut(s)	317, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.