Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010138

Physical Location & Seq

Genomic Coordinates Reverse (-)

32667403 .. 32670038

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTGATGGCTATGCTTCTATCACCATTGAAACCCTTGGCCTACTCCACTTCTGCATTTTCTCAAGACCCATCATCATCATACAGACCAGCTGTTCTTCTTCCAGGTTTGGGGAACAACTCAGCTGACTACAAGAAGTTGGAGGTTACATTGAGAGGGTATGGAGTGTCCACAGTGGTTGCTAAGGTGGCAAGAATTGATTGGCTGAGGAATGGGTGGACCCGAATTATGGCGGGGAACTCTCAGTCCTCACCTGTGCTTGATTGGTATTTGAACAGGGTGGATGAGGCTGTAAAAGAGGCAAAGGAGCTAGCACAAGGTGGACCTTTATCCCTAGTTGGACATTCGGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGATATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCCCACCAACCACCTCCAAAAGGTGTGTCAGGGGTTATTGATCAAACAAGGGGACTCCTGTATTATGTTGAAAAGAATTGCTCAAAAGCTGCTTACACTCCTGAACTGAAATATGTATGTATCGCTGGGAGGTATCTCCAAGGTGCTCGGTTATTTGGCAACTCAAGTGGAAGTGTTGATTCTGCAATTCCAATAGAGAGTTTAGAACCCTCATCAGAGGTTGCTGTTATAAATGATGTGAGCCCTTCAACATCAACCACACCCACTTTGCGTGCACGCTTCGTGGGGCAAGGGTATAAGCAGGTTTGTGGGCAGGCAGATGTTTGGGGTGATGGAGTTGTACCAGAAGTATCAGCTCATCTGGAGGGTGCTCTCAATATTAGCATAGATGGTGTTTACCACTCACCAGTTGGCTCAGATGATATCTTAAGACCGTGGTATGGGTCTCCCGCAATTGTTGAGCAATGGATACATCACCTCCTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGAP1

Protein Analysis

304

Amino Acids

32.74

Weight (kDa)

5.88

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	32 - 138	3.6e-06	Alpha/beta hydrolase family
PGAP1	PF07819	110 - 151	5.1e-06	PGAP1-like alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17670
fragaria_vesca	FvH4_7g08340
malus_domestica	MD02G1231900.v1.1 MD07G1081500.v1.1
prunus_persica	Prupe.2G106800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340711
rosa_laevigata	RLG00000029037
rosa_multiflora	Rmu_co8436023.1_g000001 Rmu_sc0000566.1_g000056
rosa_roxburghii	Rroxscaffold_4G00311210 Rroxscaffold_4G00311270 Rroxscaffold_4G00315910
rosa_rugosa	Rorug01G0161900.1
rosa_samantha	Rh1BG145100 Rh1BG146500 Rh1CG164800 Rh1DG176700 Rh1DG178600
rosa_wichuraiana	Rw0G010010 Rw1G014610 Rw1G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
Acc36I	ACCTGC	1 cut(s)	718
AciI	CCGC	2 cut(s)	233, 876
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	4 cut(s)	110, 229, 446, 866
AflII	CTTAAG	1 cut(s)	853
AgsI	TTSAA	4 cut(s)	31, 274, 497, 675
AjiI	CACGTC	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	103
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	6 cut(s)	92, 125, 310, 515, 782, 912
AluI	AGCT	6 cut(s)	92, 125, 310, 515, 782, 912
Alw21I	GWGCWC	3 cut(s)	574, 703, 799
Alw26I	GTCTC	2 cut(s)	374, 876
Alw44I	GTGCAC	1 cut(s)	699
AoxI	GGCC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	699
ApeKI	GCWGC	1 cut(s)	515
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspS9I	GGNCC	2 cut(s)	219, 323
AsuHPI	GGTGA	6 cut(s)	15, 16, 243, 767, 822, 893
AsuNHI	GCTAGC	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	219, 323
BaeGI	GKGCMC	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	671
Bbv12I	GWGCWC	3 cut(s)	574, 703, 799
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	4 cut(s)	79, 351, 752, 809
BciT130I	CCWGG	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	888
BclI	TGATCA	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	374, 876
BfaI	CTAG	2 cut(s)	311, 335
BfrI	CTTAAG	1 cut(s)	853
BfuAI	ACCTGC	1 cut(s)	718
BfuI	GTATCC	1 cut(s)	888
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	2 cut(s)	219, 323
BmgBI	CACGTC	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	219, 323
BmiI	GGNNCC	2 cut(s)	221, 424
BmrFI	CCNGG	1 cut(s)	105
BmtI	GCTAGC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	809
Bpu10I	CCTNAGC	3 cut(s)	183, 206, 908
BpuEI	CTTGAG	2 cut(s)	48, 574
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	3 cut(s)	36, 565, 860
BsaXI	ACNNNNNCTCC	1 cut(s)	888
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 229, 446, 866
Bse1I	ACTGG	1 cut(s)	833
Bse3DI	GCAATG	1 cut(s)	896
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	36, 565, 860
BseGI	GGATG	2 cut(s)	289, 362
BseLI	CCNNNNNNNGG	4 cut(s)	110, 229, 446, 866
BseMI	GCAATG	1 cut(s)	896
BseMII	CTCAG	5 cut(s)	135, 197, 257, 855, 899
BseNI	ACTGG	1 cut(s)	833
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	551
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	3 cut(s)	574, 703, 799
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	4 cut(s)	110, 229, 446, 866
BsmAI	GTCTC	2 cut(s)	374, 876
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	876
Bsp1286I	GDGCHC	4 cut(s)	574, 671, 703, 799
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	2 cut(s)	233, 876
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	5 cut(s)	134, 198, 256, 854, 900
BspLI	GGNNCC	2 cut(s)	221, 424
BspMI	ACCTGC	1 cut(s)	718
BspOI	GCTAGC	1 cut(s)	314
BspTI	CTTAAG	1 cut(s)	853
BspTNI	GGTCTC	1 cut(s)	876
BsrDI	GCAATG	1 cut(s)	896
BsrI	ACTGG	1 cut(s)	833
BssECI	CCNNGG	3 cut(s)	36, 565, 860
BssMI	GATC	1 cut(s)	466
BssT1I	CCWWGG	2 cut(s)	36, 565
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	175, 861
BstAFI	CTTAAG	1 cut(s)	853
BstC8I	GCNNGC	5 cut(s)	312, 363, 699, 703, 741
BstDEI	CTNAG	6 cut(s)	121, 183, 206, 243, 841, 908
BstDSI	CCRYGG	1 cut(s)	860
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	289, 362
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	2 cut(s)	374, 876
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	888
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	860
BtrI	CACGTC	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	289, 362
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	5 cut(s)	312, 363, 699, 703, 741
Cfr13I	GGNCC	2 cut(s)	219, 323
Csp6I	GTAC	1 cut(s)	767
CspCI	CAANNNNNGTGG	4 cut(s)	160, 195, 574, 609
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	6 cut(s)	121, 183, 206, 243, 841, 908
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DraIII	CACNNNGTG	1 cut(s)	320
Eco130I	CCWWGG	2 cut(s)	36, 565
Eco24I	GRGCYC	1 cut(s)	671
Eco31I	GGTCTC	1 cut(s)	876
Eco32I	GATATC	2 cut(s)	393, 850
Eco47I	GGWCC	2 cut(s)	219, 323
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	103
EcoRV	GATATC	2 cut(s)	393, 850
EcoT14I	CCWWGG	2 cut(s)	36, 565
EcoT38I	GRGCYC	1 cut(s)	671
ErhI	CCWWGG	2 cut(s)	36, 565
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	1 cut(s)	379
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	1 cut(s)	375
FauI	CCCGC	2 cut(s)	226, 883
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	2 cut(s)	296, 369
FriOI	GRGCYC	1 cut(s)	671
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	2 cut(s)	311, 335
GluI	GCNGC	1 cut(s)	516
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	809
HaeIII	GGCC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	3 cut(s)	415, 480, 605
HphI	GGTGA	6 cut(s)	15, 16, 243, 767, 822, 893
Hpy166II	GTNNAC	5 cut(s)	171, 219, 323, 701, 823
Hpy188I	TCNGA	3 cut(s)	397, 643, 844
Hpy188III	TCNNGA	4 cut(s)	65, 527, 788, 907
Hpy8I	GTNNAC	5 cut(s)	171, 219, 323, 701, 823
HpyAV	CCTTC	1 cut(s)	681
HpyCH4III	ACNGT	2 cut(s)	175, 861
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	56, 365, 611, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	6 cut(s)	121, 183, 206, 243, 841, 908
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	1 cut(s)	502
MaeI	CTAG	2 cut(s)	311, 335
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	3 cut(s)	89, 92, 392
MfeI	CAATTG	1 cut(s)	879
MhlI	GDGCHC	4 cut(s)	574, 671, 703, 799
MluCI	AATT	5 cut(s)	195, 225, 502, 612, 879
MlyI	GAGTC	2 cut(s)	409, 474
MmeI	TCCRAC	2 cut(s)	120, 319
MseI	TTAA	1 cut(s)	854
MspA1I	CMGCKG	2 cut(s)	92, 125
MspCI	CTTAAG	1 cut(s)	853
MspR9I	CCNGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	879
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	1 cut(s)	466
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	221, 424
PfeI	GAWTC	1 cut(s)	605
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	2 cut(s)	409, 474
PpsI	GAGTC	2 cut(s)	409, 474
PsiI	TTATAA	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	221, 424
PspPI	GGNCC	2 cut(s)	219, 323
PvuII	CAGCTG	2 cut(s)	92, 125
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
SaqAI	TTAA	1 cut(s)	854
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	2 cut(s)	219, 323
SchI	GAGTC	2 cut(s)	409, 474
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	4 cut(s)	574, 671, 703, 799
SinI	GGWCC	2 cut(s)	219, 323
SmlI	CTYRAG	3 cut(s)	63, 589, 853
SmoI	CTYRAG	3 cut(s)	63, 589, 853
Sse9I	AATT	5 cut(s)	195, 225, 502, 612, 879
SsiI	CCGC	2 cut(s)	233, 876
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	2 cut(s)	311, 335
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	2 cut(s)	36, 565
TaaI	ACNGT	2 cut(s)	175, 861
TaiI	ACGT	1 cut(s)	370
TasI	AATT	5 cut(s)	195, 225, 502, 612, 879
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	1 cut(s)	854
Tru9I	TTAA	1 cut(s)	854
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	515
TspRI	CASTG	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	853
VneI	GTGCAC	1 cut(s)	699
VpaK11BI	GGWCC	2 cut(s)	219, 323
XagI	CCTNNNNNAGG	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	833
XspI	CTAG	2 cut(s)	311, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.