RchiOBHm_Chr1g0340711

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010138
Physical Location & Seq
Forward (+)
32231803 .. 32234657
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56747

Sequence Viewer

Length: 927 bp
ATGGTGATGGCTATGCTTCTATCACCATTGAAACCCTTGGCCTACTCCACTTCTGCATTTTCTCAAGACCCATCATCATCATACAGACCAGCTGTTCTTCTTCCAGGTTTGGGGAACAATTCAGCTGACTACAAGAAGTTGGAGGTTACATTGAGAGGGTATGGAGTGTCCACAGTGGTTGCTAAGGTGGCAAGAATTGATTGGCTGAGGAATGCCGCCGGTTTGGTGGACCCGAATTACTGGCGGGGAACTCTCAGTCCTCGCCCTGTGCTTGATTGGTATTTGAAGAGGGTGGATGAGGCTGTAACAGAGGCAAGGGAGCTAGCACAAGGTGGACCTTTATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGAAATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCTCACCAACCACCTCCAAAAGGTGTGTCAGGGGTTATTGATCAAACAAGGGGACTCCTGTATTATGTTGAAAAGAATTGCTCAAAAGCTGTTTACACTCCTGAACTGAAATATGTATGTATCGCTGGGAGGTATCTCCAAGGTGCTCGCTTATTTGGCAATTCAAGTGAAAGTGTTGATTCTGCAATTCCAATAGAGAGTTTAGAACCCTCATCAGAGGTTGCTGTTATAAATGATGTGAGCACTTCAACATCAACCACACCCACTTTGCGTGCACGCTTTGTGGGGCAAGGGTATAAGCAGGTTTGTGGGCAGGCAGATGTTTGGGGTGATGGAGTTGTACCAGAAGTATCAGCTCATCTGGAGGGTGCACTCAATATTAGCATAGATGGTGTTTACCACTCACCAGTTGGTTCAGATGATATCTTAAGACCGTGGTATGGGTCTCCCGCAATTGTTGAGCAATGGATGCATCACCTCCTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGAP1

Protein Analysis

308

Amino Acids

33.37

Weight (kDa)

5.89

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 32 - 143 2.7e-06 Alpha/beta hydrolase family
PGAP1 PF07819 115 - 153 4.9e-06 PGAP1-like alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 730
AciI CCGC 3 cut(s) 216, 244, 888
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 780
AfiI CCNNNNNNNGG 3 cut(s) 110, 458, 878
AflII CTTAAG 1 cut(s) 865
AgsI TTSAA 5 cut(s) 31, 286, 509, 603, 687
AjiI CACGTC 1 cut(s) 380
AjnI CCWGG 1 cut(s) 103
AloI GAACNNNNNNTCC 2 cut(s) 241, 273
AluBI AGCT 6 cut(s) 92, 125, 322, 527, 794, 924
AluI AGCT 6 cut(s) 92, 125, 322, 527, 794, 924
Alw21I GWGCWC 4 cut(s) 586, 683, 715, 811
Alw26I GTCTC 2 cut(s) 386, 888
Alw44I GTGCAC 2 cut(s) 711, 807
AoxI GGCC 1 cut(s) 39
ApaLI GTGCAC 2 cut(s) 711, 807
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AspS9I GGNCC 2 cut(s) 229, 335
AsuHPI GGTGA 6 cut(s) 15, 16, 434, 779, 834, 905
AsuNHI GCTAGC 1 cut(s) 322
AvaII GGWCC 2 cut(s) 229, 335
BaeGI GKGCMC 2 cut(s) 715, 811
Bbv12I GWGCWC 4 cut(s) 586, 683, 715, 811
BbvCI CCTCAGC 1 cut(s) 206
BccI CCATC 4 cut(s) 79, 363, 764, 821
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 386, 888
BfaI CTAG 2 cut(s) 323, 347
BfrI CTTAAG 1 cut(s) 865
BfuAI ACCTGC 1 cut(s) 730
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 229, 335
BmgBI CACGTC 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 229, 335
BmiI GGNNCC 2 cut(s) 231, 436
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 897, 919
BmtI GCTAGC 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 821
Bpu10I CCTNAGC 3 cut(s) 183, 206, 920
BpuEI CTTGAG 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 888
BsaJI CCNNGG 3 cut(s) 36, 577, 872
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 458, 878
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 245, 845
Bse3DI GCAATG 1 cut(s) 908
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 3 cut(s) 36, 577, 872
BseGI GGATG 3 cut(s) 301, 374, 912
BseLI CCNNNNNNNGG 3 cut(s) 110, 458, 878
BseMI GCAATG 1 cut(s) 908
BseMII CTCAG 3 cut(s) 197, 268, 911
BseNI ACTGG 2 cut(s) 245, 845
BseSI GKGCMC 2 cut(s) 715, 811
BseYI CCCAGC 1 cut(s) 563
BshFI GGCC 1 cut(s) 41
BsiHKAI GWGCWC 4 cut(s) 586, 683, 715, 811
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 3 cut(s) 110, 458, 878
BsmAI GTCTC 2 cut(s) 386, 888
BsmBI CGTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 888
Bsp1286I GDGCHC 4 cut(s) 586, 683, 715, 811
Bsp143I GATC 1 cut(s) 478
BspACI CCGC 3 cut(s) 216, 244, 888
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 3 cut(s) 198, 267, 912
BspLI GGNNCC 2 cut(s) 231, 436
BspMI ACCTGC 1 cut(s) 730
BspOI GCTAGC 1 cut(s) 326
BspTI CTTAAG 1 cut(s) 865
BspTNI GGTCTC 1 cut(s) 888
BsrDI GCAATG 1 cut(s) 908
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 2 cut(s) 245, 845
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 36, 577, 872
BssMI GATC 1 cut(s) 478
BssT1I CCWWGG 2 cut(s) 36, 577
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 175, 873
Bst6I CTCTTC 1 cut(s) 281
BstAFI CTTAAG 1 cut(s) 865
BstAPI GCANNNNNTGC 1 cut(s) 907
BstC8I GCNNGC 6 cut(s) 324, 375, 586, 711, 715, 753
BstDEI CTNAG 4 cut(s) 183, 206, 254, 920
BstDSI CCRYGG 1 cut(s) 872
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 3 cut(s) 301, 374, 912
BstKTI GATC 1 cut(s) 481
BstMAI GTCTC 2 cut(s) 386, 888
BstMBI GATC 1 cut(s) 478
BstMWI GCNNNNNNNGC 3 cut(s) 188, 594, 907
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSLI GKGCMC 2 cut(s) 715, 811
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 872
BtrI CACGTC 1 cut(s) 380
BtsCI GGATG 3 cut(s) 301, 374, 912
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 6 cut(s) 324, 375, 586, 711, 715, 753
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 229, 335
Csp6I GTAC 1 cut(s) 779
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 1 cut(s) 388
CviQI GTAC 1 cut(s) 779
DdeI CTNAG 4 cut(s) 183, 206, 254, 920
DpnI GATC 1 cut(s) 480
DpnII GATC 1 cut(s) 478
DraIII CACNNNGTG 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 2 cut(s) 36, 577
Eco31I GGTCTC 1 cut(s) 888
Eco32I GATATC 1 cut(s) 862
Eco47I GGWCC 2 cut(s) 229, 335
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 103
EcoRV GATATC 1 cut(s) 862
EcoT14I CCWWGG 2 cut(s) 36, 577
EcoT22I ATGCAT 1 cut(s) 912
ErhI CCWWGG 2 cut(s) 36, 577
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 1 cut(s) 391
FaqI GGGAC 1 cut(s) 504
FatI CATG 1 cut(s) 387
FauI CCCGC 2 cut(s) 237, 895
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 3 cut(s) 308, 381, 919
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 323, 347
GluI GCNGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 567
GsuI CTGGAG 1 cut(s) 821
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 219
Hin1II CATG 1 cut(s) 391
HinfI GANTC 3 cut(s) 427, 492, 617
HpaII CCGG 1 cut(s) 219
HphI GGTGA 6 cut(s) 15, 16, 434, 779, 834, 905
Hpy166II GTNNAC 7 cut(s) 171, 229, 335, 532, 713, 809, 835
Hpy188I TCNGA 3 cut(s) 409, 655, 856
Hpy188III TCNNGA 4 cut(s) 65, 539, 800, 919
Hpy8I GTNNAC 7 cut(s) 171, 229, 335, 532, 713, 809, 835
HpyCH4III ACNGT 2 cut(s) 175, 873
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 6 cut(s) 56, 377, 623, 713, 809, 910
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 594, 907
HpyF3I CTNAG 4 cut(s) 183, 206, 254, 920
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 1 cut(s) 478
LmnI GCTCC 1 cut(s) 319
LweI GCATC 2 cut(s) 897, 919
MaeI CTAG 2 cut(s) 323, 347
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 145, 304
MalI GATC 1 cut(s) 480
MboI GATC 1 cut(s) 478
MboII GAAGA 4 cut(s) 89, 92, 298, 404
MfeI CAATTG 1 cut(s) 891
MhlI GDGCHC 4 cut(s) 586, 683, 715, 811
MluCI AATT 7 cut(s) 118, 195, 235, 514, 598, 624, 891
MlyI GAGTC 2 cut(s) 421, 486
MmeI TCCRAC 2 cut(s) 120, 331
Mph1103I ATGCAT 1 cut(s) 912
MseI TTAA 1 cut(s) 866
MspA1I CMGCKG 2 cut(s) 92, 125
MspCI CTTAAG 1 cut(s) 865
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 891
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 188, 594, 907
NdeII GATC 1 cut(s) 478
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 2 cut(s) 231, 436
NsiI ATGCAT 1 cut(s) 912
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 617
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 2 cut(s) 421, 486
PpsI GAGTC 2 cut(s) 421, 486
PsiI TTATAA 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 231, 436
PspPI GGNCC 2 cut(s) 229, 335
PvuII CAGCTG 2 cut(s) 92, 125
RsaI GTAC 1 cut(s) 780
RsaNI GTAC 1 cut(s) 779
SaqAI TTAA 1 cut(s) 866
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 478
Sau96I GGNCC 2 cut(s) 229, 335
SchI GAGTC 2 cut(s) 421, 486
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 4 cut(s) 586, 683, 715, 811
SfaNI GCATC 2 cut(s) 897, 919
SinI GGWCC 2 cut(s) 229, 335
SmlI CTYRAG 2 cut(s) 63, 865
SmoI CTYRAG 2 cut(s) 63, 865
Sse9I AATT 7 cut(s) 118, 195, 235, 514, 598, 624, 891
SsiI CCGC 3 cut(s) 216, 244, 888
SspI AATATT 1 cut(s) 817
SspMI CTAG 2 cut(s) 323, 347
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 2 cut(s) 36, 577
TaaI ACNGT 2 cut(s) 175, 873
TaiI ACGT 1 cut(s) 382
TasI AATT 7 cut(s) 118, 195, 235, 514, 598, 624, 891
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 1 cut(s) 866
Tru9I TTAA 1 cut(s) 866
TscAI CASTG 1 cut(s) 180
TspRI CASTG 1 cut(s) 180
Vha464I CTTAAG 1 cut(s) 865
VneI GTGCAC 2 cut(s) 711, 807
VpaK11BI GGWCC 2 cut(s) 229, 335
XagI CCTNNNNNAGG 1 cut(s) 456
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XspI CTAG 2 cut(s) 323, 347
Zsp2I ATGCAT 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.