Rh1BG146500

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010138
Physical Location & Seq
Reverse (-)
24170182 .. 24171714
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG146500.1

Sequence Viewer

Length: 480 bp
ATGGCTATGCTTCTATCACCATTGAAACCCTTGGCCTACTCCACTTCTGCATTTTCTCAAGACCCATCATCATCATACAGACCAGCTGTTCTTCTTCCAGTTAAGCTCATCTGGATTTTGGCTTCACTTTTTATAGGTTTGGGGAACAATTCAGCTGACTACAAGAAGTTGGAGATTACACTGAGAGGGCATGGAGTGTCCACAGTGGTTGCTAAGGTGGCAAGAATTGATTGGCTAAGGAATGCCGCCGGTTTGGTGGACCCGAATTACTGGCGGGGAACTCTCAGTCCTCACCCTGTGCTTGATTGGTATTTGAAGAGGGTGGATGAGGCTGTAAAAGAGGCAAAGGAGCTAGCACAAGGTGGACCTTTATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGATATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCCCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGAP1

Protein Analysis

159

Amino Acids

17.38

Weight (kDa)

8.86

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 246, 274
AdeI CACNNNGTG 2 cut(s) 298, 362
AgsI TTSAA 2 cut(s) 25, 316
AjiI CACGTC 1 cut(s) 410
AloI GAACNNNNNNTCC 2 cut(s) 271, 303
AluBI AGCT 4 cut(s) 86, 106, 155, 352
AluI AGCT 4 cut(s) 86, 106, 155, 352
Alw26I GTCTC 1 cut(s) 416
AoxI GGCC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 259, 365
AsuHPI GGTGA 2 cut(s) 9, 284
AsuNHI GCTAGC 1 cut(s) 352
AvaII GGWCC 2 cut(s) 259, 365
BccI CCATC 2 cut(s) 73, 393
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 2 cut(s) 353, 377
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme18I GGWCC 2 cut(s) 259, 365
BmgBI CACGTC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 259, 365
BmiI GGNNCC 2 cut(s) 261, 466
BmtI GCTAGC 1 cut(s) 356
Bpu10I CCTNAGC 2 cut(s) 213, 236
BpuEI CTTGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 98, 275, 475
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 331, 404
BseMII CTCAG 2 cut(s) 173, 298
BseNI ACTGG 3 cut(s) 98, 275, 475
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 416
BsmBI CGTCTC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 35
BspACI CCGC 2 cut(s) 246, 274
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 174, 297
BspLI GGNNCC 2 cut(s) 261, 466
BspOI GCTAGC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 3 cut(s) 98, 275, 475
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 354, 405
BstDEI CTNAG 4 cut(s) 182, 213, 236, 284
BstF5I GGATG 2 cut(s) 331, 404
BstMAI GTCTC 1 cut(s) 416
BstMWI GCNNNNNNNGC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 35
BtrI CACGTC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 331, 404
BtsIMutI CAGTG 2 cut(s) 179, 210
Cac8I GCNNGC 2 cut(s) 354, 405
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 259, 365
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 2 cut(s) 191, 418
DdeI CTNAG 4 cut(s) 182, 213, 236, 284
DraIII CACNNNGTG 2 cut(s) 298, 362
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 30
Eco32I GATATC 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 259, 365
EcoRV GATATC 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 2 cut(s) 194, 421
FaiI YATR 6 cut(s) 8, 76, 134, 192, 419, 429
FatI CATG 2 cut(s) 190, 417
FauI CCCGC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 2 cut(s) 338, 411
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 353, 377
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 249
Hin1II CATG 2 cut(s) 194, 421
HinfI GANTC 1 cut(s) 457
HpaII CCGG 1 cut(s) 249
HphI GGTGA 2 cut(s) 9, 284
Hpy166II GTNNAC 3 cut(s) 201, 259, 365
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 2 cut(s) 59, 112
Hpy8I GTNNAC 3 cut(s) 201, 259, 365
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 50, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 4 cut(s) 182, 213, 236, 284
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 2 cut(s) 194, 421
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 8 cut(s) 96, 97, 111, 256, 262, 309, 378, 461
MaeI CTAG 2 cut(s) 353, 377
MaeII ACGT 1 cut(s) 409
MboII GAAGA 4 cut(s) 83, 86, 328, 434
MluCI AATT 3 cut(s) 148, 225, 265
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 2 cut(s) 150, 361
MnlI CCTC 6 cut(s) 179, 300, 312, 322, 334, 389
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 2 cut(s) 86, 155
MspI CCGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 218
NheI GCTAGC 1 cut(s) 352
NlaIII CATG 2 cut(s) 194, 421
NlaIV GGNNCC 2 cut(s) 261, 466
PctI GAATGC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 261, 466
PspPI GGNCC 2 cut(s) 259, 365
PvuII CAGCTG 2 cut(s) 86, 155
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 259, 365
SchI GAGTC 1 cut(s) 451
SetI ASST 9 cut(s) 88, 108, 139, 157, 219, 354, 364, 370, 412
SinI GGWCC 2 cut(s) 259, 365
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 3 cut(s) 148, 225, 265
SsiI CCGC 2 cut(s) 246, 274
SspMI CTAG 2 cut(s) 353, 377
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 412
TasI AATT 3 cut(s) 148, 225, 265
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 2 cut(s) 186, 210
TspRI CASTG 2 cut(s) 186, 210
VpaK11BI GGWCC 2 cut(s) 259, 365
XspI CTAG 2 cut(s) 353, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.