Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010138

Physical Location & Seq

Genomic Coordinates Forward (+)

7926013 .. 7928884

Gene Structure 2872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1081500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCACACACTTTGGATTATGGCATTTTGTACAAAGCTTAATTCCTGTTTTGTGGTTGTCTGGTTTCAGGGTTTGGGGAACAATTCAGCTGACTACCAGAAGTTGGAGCAGACTCTGAGAGGGTATGGAGTGAGCACAGTGGTTGCTAAGGTGTCAAGAATTGATTGGCTGAGGAATGCCGCCGGCTTGGTTGACCCCAATTACTGGCGAGGAACTCTCAGTCCTCGGCCTGTACTCGACTGGTATTTAAAGAGGGTGGACGAGGCAGTACAAGAGGCCAAGGAGCTGTCACAAGGTGGGACTTTATCCCTCGTTGGACACTCAGCAGGAGGATGGCTTGCGCGTCTTTACATGGAAGAATTCGGGTTTTCAGATATTTCGTTATTATTGACCCTTGGAACCCCCCACCAGCCACCACCAAAAGGCGTGTCGGGGGTCATTGATCAAACGAGGGGTCTCCTGGATTATGTTAATAAGCATTGCTCGAAAGCTGTTTACACTCCCGAACTGAAATATGTATGTATCGCAGGGAGGTATATTCAAGGTGCTCGTTTATTTGGCAACTCAAACGAAACCATTGATTCTGCACTCCCAATAGAGGGTGTAGAATCCTCATCAGATGTTGCTCTCATAAATGATGCGACTGTGAGCACTCCAACATCAACCACAACCACCTTGCGTGCGCGCTTTGTCGGGCAAGGGTACAAGCAGGTATGTGGGCAGGCAGATGTTTGGGGAGACGGGGTTGTACCAGAAGCATCAGCCCATCTGGAGGGTGCCCTCAACATTAGCTTCGACGGTGTTTACCACTCACCAGTTGGTTCAGATGATATGTTGAGACCATGGTACGGGTCTCCTGCCATCGTAGAGCAATGGATAACTCATCTCCTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGAP1

Protein Analysis

299

Amino Acids

32.61

Weight (kDa)

5.63

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17670
fragaria_vesca	FvH4_7g08340
malus_domestica	MD02G1231900.v1.1 MD07G1081500.v1.1
prunus_persica	Prupe.2G106800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340711
rosa_laevigata	RLG00000029037
rosa_multiflora	Rmu_co8436023.1_g000001 Rmu_sc0000566.1_g000056
rosa_roxburghii	Rroxscaffold_4G00311210 Rroxscaffold_4G00311270 Rroxscaffold_4G00315910
rosa_rugosa	Rorug01G0161900.1
rosa_samantha	Rh1BG145100 Rh1BG146500 Rh1CG164800 Rh1DG176700 Rh1DG178600
rosa_wichuraiana	Rw0G010010 Rw1G014610 Rw1G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
AccB1I	GGYRCC	1 cut(s)	776
AccB7I	CCANNNNNTGG	2 cut(s)	103, 204
AccII	CGCG	2 cut(s)	343, 685
AciI	CCGC	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	359
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	6 cut(s)	31, 234, 270, 704, 750, 848
AfiI	CCNNNNNNNGG	7 cut(s)	103, 204, 422, 598, 599, 772, 848
AgsI	TTSAA	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	459
AloI	GAACNNNNNNTCC	2 cut(s)	205, 237
AluBI	AGCT	5 cut(s)	37, 89, 286, 491, 792
AluI	AGCT	5 cut(s)	37, 89, 286, 491, 792
Alw21I	GWGCWC	3 cut(s)	137, 550, 653
Alw26I	GTCTC	4 cut(s)	461, 732, 832, 858
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	227, 276
ApoI	RAATTY	1 cut(s)	359
ArsI	GACNNNNNNTTYG	4 cut(s)	413, 439, 445, 471
AspLEI	GCGC	3 cut(s)	343, 685, 687
AsuHPI	GGTGA	1 cut(s)	804
BaeGI	GKGCMC	1 cut(s)	781
BanI	GGYRCC	1 cut(s)	776
Bbv12I	GWGCWC	3 cut(s)	137, 550, 653
BbvCI	CCTCAGC	1 cut(s)	170
BccI	CCATC	3 cut(s)	327, 774, 869
BciT130I	CCWGG	1 cut(s)	461
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	4 cut(s)	461, 732, 832, 858
BfuAI	ACCTGC	1 cut(s)	700
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	461
BmiI	GGNNCC	2 cut(s)	400, 778
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	2 cut(s)	628, 767
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
BpmI	CTGGAG	1 cut(s)	791
Bpu10I	CCTNAGC	2 cut(s)	147, 170
BsaI	GGTCTC	3 cut(s)	461, 832, 858
BsaJI	CCNNGG	4 cut(s)	224, 279, 394, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	7 cut(s)	103, 204, 422, 598, 599, 772, 848
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	3 cut(s)	209, 245, 815
Bse3DI	GCAATG	2 cut(s)	478, 878
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	4 cut(s)	224, 279, 394, 842
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	7 cut(s)	103, 204, 422, 598, 599, 772, 848
BseMI	GCAATG	2 cut(s)	478, 878
BseMII	CTCAG	4 cut(s)	107, 161, 232, 336
BseNI	ACTGG	3 cut(s)	209, 245, 815
BsePI	GCGCGC	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	781
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	2 cut(s)	343, 685
BshFI	GGCC	2 cut(s)	229, 278
BshNI	GGYRCC	1 cut(s)	776
BsiHKAI	GWGCWC	3 cut(s)	137, 550, 653
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	7 cut(s)	103, 204, 422, 598, 599, 772, 848
BsmAI	GTCTC	4 cut(s)	461, 732, 832, 858
BsmBI	CGTCTC	1 cut(s)	732
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	229, 278
Bso31I	GGTCTC	3 cut(s)	461, 832, 858
Bsp1286I	GDGCHC	4 cut(s)	137, 550, 653, 781
Bsp1407I	TGTACA	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	842
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	229, 278
BspCNI	CTCAG	4 cut(s)	108, 162, 231, 335
BspFNI	CGCG	2 cut(s)	343, 685
BspLI	GGNNCC	2 cut(s)	400, 778
BspMI	ACCTGC	1 cut(s)	700
BspT107I	GGYRCC	1 cut(s)	776
BspTNI	GGTCTC	3 cut(s)	461, 832, 858
BsrDI	GCAATG	2 cut(s)	478, 878
BsrFI	RCCGGY	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	29
BsrI	ACTGG	3 cut(s)	209, 245, 815
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	4 cut(s)	224, 279, 394, 842
BssHII	GCGCGC	1 cut(s)	683
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	3 cut(s)	279, 394, 842
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	3 cut(s)	139, 646, 800
BstAUI	TGTACA	1 cut(s)	29
BstC8I	GCNNGC	5 cut(s)	184, 339, 681, 685, 723
BstDEI	CTNAG	5 cut(s)	116, 147, 170, 218, 322
BstDSI	CCRYGG	1 cut(s)	842
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	2 cut(s)	343, 685
BstHHI	GCGC	3 cut(s)	343, 685, 687
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	4 cut(s)	461, 732, 832, 858
BstMBI	GATC	1 cut(s)	442
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	2 cut(s)	343, 685
BsuRI	GGCC	2 cut(s)	229, 278
BtgI	CCRYGG	1 cut(s)	842
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	5 cut(s)	184, 339, 681, 685, 723
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	3 cut(s)	343, 685, 687
Cfr10I	RCCGGY	1 cut(s)	182
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	6 cut(s)	30, 233, 269, 703, 749, 847
CviAII	CATG	2 cut(s)	352, 843
CviQI	GTAC	6 cut(s)	30, 233, 269, 703, 749, 847
DdeI	CTNAG	5 cut(s)	116, 147, 170, 218, 322
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
DraI	TTTAAA	1 cut(s)	249
DraIII	CACNNNGTG	1 cut(s)	296
Eco130I	CCWWGG	3 cut(s)	279, 394, 842
Eco31I	GGTCTC	3 cut(s)	461, 832, 858
EcoRI	GAATTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	3 cut(s)	279, 394, 842
ErhI	CCWWGG	3 cut(s)	279, 394, 842
Esp3I	CGTCTC	1 cut(s)	732
FaeI	CATG	2 cut(s)	355, 846
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	2 cut(s)	351, 842
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	180
GlaI	GCGC	3 cut(s)	342, 684, 686
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	791
HaeIII	GGCC	2 cut(s)	229, 278
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	3 cut(s)	343, 685, 687
Hin1II	CATG	2 cut(s)	355, 846
Hin6I	GCGC	3 cut(s)	341, 683, 685
HinP1I	GCGC	3 cut(s)	341, 683, 685
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	112, 581, 608
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	804
Hpy166II	GTNNAC	4 cut(s)	193, 259, 496, 805
Hpy188I	TCNGA	4 cut(s)	117, 373, 619, 826
Hpy188III	TCNNGA	3 cut(s)	156, 503, 770
Hpy8I	GTNNAC	4 cut(s)	193, 259, 496, 805
Hpy99I	CGWCG	1 cut(s)	800
HpyCH4III	ACNGT	3 cut(s)	139, 646, 800
HpyCH4V	TGCA	2 cut(s)	4, 587
HpyF3I	CTNAG	5 cut(s)	116, 147, 170, 218, 322
Hsp92II	CATG	2 cut(s)	355, 846
HspAI	GCGC	3 cut(s)	341, 683, 685
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	2 cut(s)	106, 283
LweI	GCATC	2 cut(s)	628, 767
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	1 cut(s)	368
MhlI	GDGCHC	4 cut(s)	137, 550, 653, 781
MluCI	AATT	5 cut(s)	40, 82, 159, 199, 359
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	3 cut(s)	84, 295, 680
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	4 cut(s)	39, 248, 471, 891
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	2 cut(s)	343, 685
NaeI	GCCGGC	1 cut(s)	184
NcoI	CCATGG	1 cut(s)	842
NdeII	GATC	1 cut(s)	442
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	355, 846
NlaIV	GGNNCC	2 cut(s)	400, 778
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	288
PauI	GCGCGC	1 cut(s)	683
PctI	GAATGC	1 cut(s)	181
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	581, 608
PflMI	CCANNNNNTGG	2 cut(s)	103, 204
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	400, 778
PstNI	CAGNNNCTG	1 cut(s)	115
PteI	GCGCGC	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	6 cut(s)	31, 234, 270, 704, 750, 848
RsaNI	GTAC	6 cut(s)	30, 233, 269, 703, 749, 847
SaqAI	TTAA	4 cut(s)	39, 248, 471, 891
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	4 cut(s)	137, 550, 653, 781
SfaNI	GCATC	2 cut(s)	628, 767
Sse9I	AATT	5 cut(s)	40, 82, 159, 199, 359
SsiI	CCGC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	3 cut(s)	279, 394, 842
TaaI	ACNGT	3 cut(s)	139, 646, 800
TaqI	TCGA	3 cut(s)	237, 485, 795
TasI	AATT	5 cut(s)	40, 82, 159, 199, 359
TatI	WGTACW	3 cut(s)	29, 232, 268
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	581, 608
Tru1I	TTAA	4 cut(s)	39, 248, 471, 891
Tru9I	TTAA	4 cut(s)	39, 248, 471, 891
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	288
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	2 cut(s)	103, 204
XapI	RAATTY	1 cut(s)	359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.