Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010138

Physical Location & Seq

Genomic Coordinates Forward (+)

16454872 .. 16458627

Gene Structure 3756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G106800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCCCCTTTCCCATGGTGTGGGTATGGGAATGGCTATGCTTTTATCTCCTTTGAAACCACTGGCCTTCTCCTCCTCTGCATTCTCTCAGGACCCATCAACATCATCATCATATCGACCTGCTGTTGTTCTTCCAGGTTTGGGGAACAATTCAGCTGACTACCAGAAGTTGGAGCTTACTTTGAGTGAGTATGGAGTGGCCACAGTAGTTGCTAAGGTGTCAAGACTTGATTGGCTGAGGAATGCCGCCGGTTTGGTTGACCCAAATTACTGGCGGGGAACTCTCAGTCCTCGCCCTGTACTAGATTGGTATTTGAAGAGGGTGGATGAGGCCGTACAAGAGGCAAAGGAGCTGGCACAAGGTGGGAAATTATCCCTGATTGGACACTCAGCAGGAGGATGGCTTGCACGTCTCTACATTGAAGAAATTGGGATGTCCGATATATCCTTGTTGTTGACTCTTGGAACCCCCCACCTGCCACCACCAAAAGGTGTGTCGGGGGTTATTGATCAAACAAGAGGTCTCCTGGATTACGTTGATAAGAATTGCTCAAAAGCTGTTTACACTCCTGAAGTGAAATATGTATGTATAGCAGGGAGGTATCTCCAAGGTGCTCGTTTGTTTGGGAACTCAAATGAAAGTATTGATTCTGCACTTCCAATAGCGAGTGTAGAACCTTCATCAGAGGTTGCTGTCATAAATGATATGAGCACTTCAACATCAACCACAACCACCTTGCGTGCTCGCTTTGTCGGGCAAGGGTACAAGCAGGTTTGTGGGCAGGCAGATGTTTGGGGAGATGGGGTTGTGCCAGAAGTATCAGCCCATCTTGAGGGTGCACTCAATATTAGCTTAGATGGTGTTTACCACTCACCAGTTGGTTCAGATGATATCTTGAGACCATGGTATGGGTCTCCTGCTATTGTAGAGCAATGGATACATCACCTCCTAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGAP1

Protein Analysis

319

Amino Acids

34.15

Weight (kDa)

5.49

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17670
fragaria_vesca	FvH4_7g08340
malus_domestica	MD02G1231900.v1.1 MD07G1081500.v1.1
prunus_persica	Prupe.2G106800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340711
rosa_laevigata	RLG00000029037
rosa_multiflora	Rmu_co8436023.1_g000001 Rmu_sc0000566.1_g000056
rosa_roxburghii	Rroxscaffold_4G00311210 Rroxscaffold_4G00311270 Rroxscaffold_4G00315910
rosa_rugosa	Rorug01G0161900.1
rosa_samantha	Rh1BG145100 Rh1BG146500 Rh1CG164800 Rh1DG176700 Rh1DG178600
rosa_wichuraiana	Rw0G010010 Rw1G014610 Rw1G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	483
Acc36I	ACCTGC	3 cut(s)	127, 483, 760
AccB7I	CCANNNNNTGG	3 cut(s)	19, 169, 908
AciI	CCGC	2 cut(s)	246, 274
AcoI	YGGCCR	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	591
AdeI	CACNNNGTG	1 cut(s)	362
AfaI	GTAC	3 cut(s)	300, 336, 764
AfiI	CCNNNNNNNGG	6 cut(s)	19, 140, 169, 488, 832, 908
AgsI	TTSAA	4 cut(s)	55, 316, 422, 717
AjiI	CACGTC	1 cut(s)	410
AjnI	CCWGG	2 cut(s)	133, 525
AloI	GAACNNNNNNTCC	2 cut(s)	271, 303
AluBI	AGCT	5 cut(s)	155, 175, 352, 557, 852
AluI	AGCT	5 cut(s)	155, 175, 352, 557, 852
Alw21I	GWGCWC	4 cut(s)	616, 713, 745, 841
Alw26I	GTCTC	4 cut(s)	416, 527, 892, 918
Alw44I	GTGCAC	1 cut(s)	837
AoxI	GGCC	3 cut(s)	63, 198, 330
ApaLI	GTGCAC	1 cut(s)	837
ArsI	GACNNNNNNTTYG	4 cut(s)	479, 505, 511, 537
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	864, 935
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	841
BalI	TGGCCA	1 cut(s)	200
Bbv12I	GWGCWC	4 cut(s)	616, 713, 745, 841
BbvCI	CCTCAGC	1 cut(s)	236
BccI	CCATC	5 cut(s)	103, 393, 794, 834, 851
BceAI	ACGGC	1 cut(s)	317
BciT130I	CCWGG	2 cut(s)	135, 527
BciVI	GTATCC	1 cut(s)	930
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	4 cut(s)	416, 527, 892, 918
BfaI	CTAG	1 cut(s)	302
BfuAI	ACCTGC	3 cut(s)	127, 483, 760
BfuI	GTATCC	1 cut(s)	930
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	135, 527
Bme18I	GGWCC	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	93, 466
BmrFI	CCNGG	2 cut(s)	135, 527
Bpu10I	CCTNAGC	2 cut(s)	213, 236
BpuEI	CTTGAG	2 cut(s)	851, 916
BsaI	GGTCTC	3 cut(s)	527, 892, 918
BsaJI	CCNNGG	3 cut(s)	13, 607, 902
BsaXI	ACNNNNNCTCC	3 cut(s)	789, 819, 930
Bsc4I	CCNNNNNNNGG	6 cut(s)	19, 140, 169, 488, 832, 908
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	3 cut(s)	66, 275, 875
Bse3DI	GCAATG	1 cut(s)	938
BseBI	CCWGG	2 cut(s)	135, 527
BseDI	CCNNGG	3 cut(s)	13, 607, 902
BseGI	GGATG	3 cut(s)	331, 404, 438
BseLI	CCNNNNNNNGG	6 cut(s)	19, 140, 169, 488, 832, 908
BseMI	GCAATG	1 cut(s)	938
BseMII	CTCAG	4 cut(s)	101, 227, 298, 402
BseNI	ACTGG	3 cut(s)	66, 275, 875
BseRI	GAGGAG	2 cut(s)	61, 64
BseSI	GKGCMC	1 cut(s)	841
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	3 cut(s)	65, 200, 332
BsiHKAI	GWGCWC	4 cut(s)	616, 713, 745, 841
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	6 cut(s)	19, 140, 169, 488, 832, 908
BsmAI	GTCTC	4 cut(s)	416, 527, 892, 918
BsmBI	CGTCTC	1 cut(s)	416
BsmI	GAATGC	2 cut(s)	80, 247
BsnI	GGCC	3 cut(s)	65, 200, 332
Bso31I	GGTCTC	3 cut(s)	527, 892, 918
Bsp1286I	GDGCHC	4 cut(s)	616, 713, 745, 841
Bsp143I	GATC	1 cut(s)	508
Bsp19I	CCATGG	2 cut(s)	13, 902
BspACI	CCGC	2 cut(s)	246, 274
BspANI	GGCC	3 cut(s)	65, 200, 332
BspCNI	CTCAG	4 cut(s)	100, 228, 297, 401
BspLI	GGNNCC	2 cut(s)	93, 466
BspMI	ACCTGC	3 cut(s)	127, 483, 760
BspTNI	GGTCTC	3 cut(s)	527, 892, 918
BsrDI	GCAATG	1 cut(s)	938
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	66, 275, 875
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	13, 607, 902
BssMI	GATC	1 cut(s)	508
BssT1I	CCWWGG	3 cut(s)	13, 607, 902
Bst2UI	CCWGG	2 cut(s)	135, 527
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	311
BstC8I	GCNNGC	5 cut(s)	354, 405, 741, 745, 783
BstDEI	CTNAG	6 cut(s)	87, 213, 236, 284, 388, 853
BstDSI	CCRYGG	2 cut(s)	13, 902
BstF5I	GGATG	3 cut(s)	331, 404, 438
BstKTI	GATC	1 cut(s)	511
BstMAI	GTCTC	4 cut(s)	416, 527, 892, 918
BstMBI	GATC	1 cut(s)	508
BstNI	CCWGG	2 cut(s)	135, 527
BstSCI	CCNGG	2 cut(s)	133, 525
BstSLI	GKGCMC	1 cut(s)	841
BstXI	CCANNNNNNTGG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	930
BsuRI	GGCC	3 cut(s)	65, 200, 332
BtgI	CCRYGG	2 cut(s)	13, 902
BtrI	CACGTC	1 cut(s)	410
BtsCI	GGATG	3 cut(s)	331, 404, 438
BtsIMutI	CAGTG	1 cut(s)	59
BveI	ACCTGC	3 cut(s)	127, 483, 760
Cac8I	GCNNGC	5 cut(s)	354, 405, 741, 745, 783
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	299, 335, 763
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	2 cut(s)	14, 903
CviQI	GTAC	3 cut(s)	299, 335, 763
DdeI	CTNAG	6 cut(s)	87, 213, 236, 284, 388, 853
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
DraIII	CACNNNGTG	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	3 cut(s)	13, 607, 902
Eco31I	GGTCTC	3 cut(s)	527, 892, 918
Eco32I	GATATC	1 cut(s)	892
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	133, 525
EcoRV	GATATC	1 cut(s)	892
EcoT14I	CCWWGG	3 cut(s)	13, 607, 902
ErhI	CCWWGG	3 cut(s)	13, 607, 902
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	2 cut(s)	17, 906
FatI	CATG	2 cut(s)	13, 902
FauI	CCCGC	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	3 cut(s)	338, 411, 445
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	65, 200, 332
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	2 cut(s)	17, 906
HincII	GTYRAC	2 cut(s)	259, 456
HindII	GTYRAC	2 cut(s)	259, 456
HinfI	GANTC	2 cut(s)	457, 647
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	864, 935
Hpy166II	GTNNAC	5 cut(s)	259, 456, 562, 839, 865
Hpy188I	TCNGA	3 cut(s)	439, 685, 886
Hpy188III	TCNNGA	5 cut(s)	89, 222, 569, 830, 895
Hpy8I	GTNNAC	5 cut(s)	259, 456, 562, 839, 865
HpyAV	CCTTC	2 cut(s)	76, 687
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	409, 534
HpyCH4V	TGCA	4 cut(s)	80, 407, 653, 839
HpyF3I	CTNAG	6 cut(s)	87, 213, 236, 284, 388, 853
HpySE526I	ACGT	2 cut(s)	409, 534
Hsp92II	CATG	2 cut(s)	17, 906
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	508
LmnI	GCTCC	2 cut(s)	172, 349
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	409, 534
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MboII	GAAGA	3 cut(s)	122, 328, 434
MhlI	GDGCHC	4 cut(s)	616, 713, 745, 841
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	5 cut(s)	148, 265, 368, 426, 544
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	150
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	135, 527
Mva1269I	GAATGC	2 cut(s)	80, 247
MvaI	CCWGG	2 cut(s)	135, 527
NcoI	CCATGG	2 cut(s)	13, 902
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	2 cut(s)	17, 906
NlaIV	GGNNCC	2 cut(s)	93, 466
PaqCI	CACCTGC	1 cut(s)	483
PctI	GAATGC	2 cut(s)	80, 247
PfeI	GAWTC	1 cut(s)	647
PflMI	CCANNNNNTGG	3 cut(s)	19, 169, 908
PfoI	TCCNGGA	1 cut(s)	525
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	133, 525
PspGI	CCWGG	2 cut(s)	133, 525
PspN4I	GGNNCC	2 cut(s)	93, 466
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	3 cut(s)	300, 336, 764
RsaNI	GTAC	3 cut(s)	299, 335, 763
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	135, 527
SduI	GDGCHC	4 cut(s)	616, 713, 745, 841
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	830, 895
SmoI	CTYRAG	2 cut(s)	830, 895
Sse9I	AATT	5 cut(s)	148, 265, 368, 426, 544
SsiI	CCGC	2 cut(s)	246, 274
SspI	AATATT	1 cut(s)	847
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	133, 525
StyI	CCWWGG	3 cut(s)	13, 607, 902
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	412, 537
TaqI	TCGA	1 cut(s)	115
TasI	AATT	5 cut(s)	148, 265, 368, 426, 544
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	647
TscAI	CASTG	1 cut(s)	66
TspDTI	ATGAA	2 cut(s)	651, 669
TspRI	CASTG	1 cut(s)	66
Van91I	CCANNNNNTGG	3 cut(s)	19, 169, 908
VneI	GTGCAC	1 cut(s)	837
VpaK11BI	GGWCC	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	875
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.