Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010138

Physical Location & Seq

Genomic Coordinates Reverse (-)

27767477 .. 27770100

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1231900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGTGTCAAGAATTGATTGGCTGAGGAATGCCGCTGGCTTGGTTGACCACAATTACGGGCGAGGAACTCTCAGTCCTCGGCCTGTACTCGATTGGTATTTGAAGAGGGTGGATGATGCCGTACAAGAGGCCAAGGAGCTCTCACAAGGAGGATGGCTTGCACGTCTTTACAAGGAAGAATTCGGGTTTTCCGATATTTCGTTGTTATTGACTCTTGGAACCCCGCACCTGCCGCCACCAAAGGGTGTGTCGGGGGTCATTGATCAAACGAGGGGTCTTCTGGATTACGTTAATAAGCATTGCTCAAAAGCTGTTTACACTCGTGAACTGAAATATGTATGTATCGCAGGGAGATACATTCAAGGTGCTCGTTTATTTGGCAACTCAAATCAAAGTATTGTTTCTGCACTCCCAATAGAGGGTGTAGATCCCTCATCAGATGTTGCTTTCATAAGTGATGCGATTGTGAGCACTTCAACATCAACCACAACCACCTTGCGTGCGCGCTTTGTCAGGCAAGGGTACAAGCAGGTCTGTGGGCAGGCAGATGTTTGGGGAGATAGAGTTGTACCAGAAGCATCATCTTATCTGGAGGCTGCCCTCATCATTAGCTTCGACGGTGTTTACCACTCACCAGTTGGTTCAGATGATGCGTTGACACCATGGTACGGGTCTCCCGCCATTGTAGAGCAATGGATACATCATCTCCTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGAP1

Protein Analysis

239

Amino Acids

26.21

Weight (kDa)

6.06

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17670
fragaria_vesca	FvH4_7g08340
malus_domestica	MD02G1231900.v1.1 MD07G1081500.v1.1
prunus_persica	Prupe.2G106800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340711
rosa_laevigata	RLG00000029037
rosa_multiflora	Rmu_co8436023.1_g000001 Rmu_sc0000566.1_g000056
rosa_roxburghii	Rroxscaffold_4G00311210 Rroxscaffold_4G00311270 Rroxscaffold_4G00315910
rosa_rugosa	Rorug01G0161900.1
rosa_samantha	Rh1BG145100 Rh1BG146500 Rh1CG164800 Rh1DG176700 Rh1DG178600
rosa_wichuraiana	Rw0G010010 Rw1G014610 Rw1G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	237
Acc36I	ACCTGC	2 cut(s)	237, 520
AccII	CGCG	1 cut(s)	505
AciI	CCGC	4 cut(s)	33, 224, 233, 678
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	5 cut(s)	87, 123, 524, 570, 668
AfiI	CCNNNNNNNGG	4 cut(s)	242, 418, 419, 668
AgsI	TTSAA	3 cut(s)	103, 362, 477
AjiI	CACGTC	1 cut(s)	164
AloI	GAACNNNNNNTCC	2 cut(s)	58, 90
AluBI	AGCT	3 cut(s)	139, 311, 612
AluI	AGCT	3 cut(s)	139, 311, 612
Alw21I	GWGCWC	3 cut(s)	141, 370, 473
Alw26I	GTCTC	1 cut(s)	678
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	2 cut(s)	80, 129
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	1 cut(s)	179
ArsI	GACNNNNNNTTYG	4 cut(s)	233, 259, 265, 291
AspLEI	GCGC	2 cut(s)	505, 507
AsuHPI	GGTGA	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	3 cut(s)	141, 370, 473
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	690
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	678
BfuAI	ACCTGC	2 cut(s)	237, 520
BfuI	GTATCC	1 cut(s)	690
BisI	GCNGC	3 cut(s)	33, 233, 597
BlsI	GCNGC	3 cut(s)	34, 234, 598
BmgBI	CACGTC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	4 cut(s)	106, 448, 587, 640
BpiI	GAAGAC	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpmI	CTGGAG	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	678
BsaJI	CCNNGG	3 cut(s)	77, 132, 662
BsaXI	ACNNNNNCTCC	3 cut(s)	549, 579, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 418, 419, 668
Bse1I	ACTGG	1 cut(s)	635
Bse3DI	GCAATG	2 cut(s)	298, 698
BseDI	CCNNGG	3 cut(s)	77, 132, 662
BseGI	GGATG	2 cut(s)	118, 158
BseLI	CCNNNNNNNGG	4 cut(s)	242, 418, 419, 668
BseMI	GCAATG	2 cut(s)	298, 698
BseMII	CTCAG	2 cut(s)	14, 85
BseNI	ACTGG	1 cut(s)	635
BsePI	GCGCGC	1 cut(s)	503
BseXI	GCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	390
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	2 cut(s)	82, 131
BsiHKAI	GWGCWC	3 cut(s)	141, 370, 473
BslI	CCNNNNNNNGG	4 cut(s)	242, 418, 419, 668
BsmAI	GTCTC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	82, 131
Bso31I	GGTCTC	1 cut(s)	678
Bsp1286I	GDGCHC	3 cut(s)	141, 370, 473
Bsp143I	GATC	2 cut(s)	262, 427
Bsp19I	CCATGG	1 cut(s)	662
BspACI	CCGC	4 cut(s)	33, 224, 233, 678
BspANI	GGCC	2 cut(s)	82, 131
BspCNI	CTCAG	2 cut(s)	15, 84
BspFNI	CGCG	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	220
BspMI	ACCTGC	2 cut(s)	237, 520
BspPI	GGATC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	678
BsrDI	GCAATG	2 cut(s)	298, 698
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	3 cut(s)	77, 132, 662
BssHII	GCGCGC	1 cut(s)	503
BssMI	GATC	2 cut(s)	262, 427
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	2 cut(s)	132, 662
Bst2BI	CACGAG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	5 cut(s)	37, 159, 501, 505, 543
BstDEI	CTNAG	2 cut(s)	23, 71
BstDSI	CCRYGG	1 cut(s)	662
BstF5I	GGATG	2 cut(s)	118, 158
BstFNI	CGCG	1 cut(s)	505
BstHHI	GCGC	2 cut(s)	505, 507
BstKTI	GATC	2 cut(s)	265, 430
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	2 cut(s)	262, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	690
BsuRI	GGCC	2 cut(s)	82, 131
BtgI	CCRYGG	1 cut(s)	662
BtrI	CACGTC	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	118, 158
BveI	ACCTGC	2 cut(s)	237, 520
Cac8I	GCNNGC	5 cut(s)	37, 159, 501, 505, 543
CfoI	GCGC	2 cut(s)	505, 507
Csp6I	GTAC	5 cut(s)	86, 122, 523, 569, 667
CviAII	CATG	1 cut(s)	663
CviJI	RGCY	9 cut(s)	22, 39, 82, 131, 139, 157, 311, 596, 612
CviKI_1	RGCY	9 cut(s)	22, 39, 82, 131, 139, 157, 311, 596, 612
CviQI	GTAC	5 cut(s)	86, 122, 523, 569, 667
DdeI	CTNAG	2 cut(s)	23, 71
DpnI	GATC	2 cut(s)	264, 429
DpnII	GATC	2 cut(s)	262, 427
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	132, 662
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	678
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	132, 662
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	2 cut(s)	132, 662
FaeI	CATG	1 cut(s)	666
FaiI	YATR	4 cut(s)	336, 340, 452, 664
FatI	CATG	1 cut(s)	662
FauI	CCCGC	2 cut(s)	231, 685
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	33, 233, 597
FokI	GGATG	2 cut(s)	125, 165
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	3 cut(s)	33, 233, 597
GlaI	GCGC	2 cut(s)	504, 506
GluI	GCNGC	3 cut(s)	33, 233, 597
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	2 cut(s)	82, 131
HhaI	GCGC	2 cut(s)	505, 507
Hin1II	CATG	1 cut(s)	666
Hin6I	GCGC	2 cut(s)	503, 505
HinP1I	GCGC	2 cut(s)	503, 505
HincII	GTYRAC	2 cut(s)	46, 657
HindII	GTYRAC	2 cut(s)	46, 657
HinfI	GANTC	1 cut(s)	211
HphI	GGTGA	1 cut(s)	624
Hpy166II	GTNNAC	5 cut(s)	46, 316, 326, 625, 657
Hpy188I	TCNGA	3 cut(s)	193, 439, 646
Hpy188III	TCNNGA	4 cut(s)	9, 281, 323, 590
Hpy8I	GTNNAC	5 cut(s)	46, 316, 326, 625, 657
Hpy99I	CGWCG	1 cut(s)	620
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	2 cut(s)	163, 288
HpyCH4V	TGCA	2 cut(s)	161, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	2 cut(s)	23, 71
HpySE526I	ACGT	2 cut(s)	163, 288
Hsp92II	CATG	1 cut(s)	666
HspAI	GCGC	2 cut(s)	503, 505
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	262, 427
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	4 cut(s)	106, 448, 587, 640
MaeII	ACGT	2 cut(s)	163, 288
MalI	GATC	2 cut(s)	264, 429
MboI	GATC	2 cut(s)	262, 427
MboII	GAAGA	3 cut(s)	115, 188, 269
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	3 cut(s)	141, 370, 473
MluCI	AATT	3 cut(s)	12, 52, 179
MlyI	GAGTC	1 cut(s)	205
MseI	TTAA	2 cut(s)	291, 711
MspA1I	CMGCKG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	34
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	662
NdeII	GATC	2 cut(s)	262, 427
NlaIII	CATG	1 cut(s)	666
NlaIV	GGNNCC	1 cut(s)	220
NmeAIII	GCCGAG	1 cut(s)	58
PaqCI	CACCTGC	1 cut(s)	237
PauI	GCGCGC	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	34, 234, 598
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	427
PteI	GCGCGC	1 cut(s)	503
RsaI	GTAC	5 cut(s)	87, 123, 524, 570, 668
RsaNI	GTAC	5 cut(s)	86, 122, 523, 569, 667
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	291, 711
SatI	GCNGC	3 cut(s)	33, 233, 597
Sau3AI	GATC	2 cut(s)	262, 427
SchI	GAGTC	1 cut(s)	205
SduI	GDGCHC	3 cut(s)	141, 370, 473
SetI	ASST	9 cut(s)	141, 166, 231, 291, 313, 367, 497, 534, 614
SfaNI	GCATC	4 cut(s)	106, 448, 587, 640
Sse9I	AATT	3 cut(s)	12, 52, 179
SsiI	CCGC	4 cut(s)	33, 224, 233, 678
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	132, 662
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	2 cut(s)	166, 291
TaqI	TCGA	2 cut(s)	90, 615
TasI	AATT	3 cut(s)	12, 52, 179
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	2 cut(s)	35, 235
Tru1I	TTAA	2 cut(s)	291, 711
Tru9I	TTAA	2 cut(s)	291, 711
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	1 cut(s)	439
XapI	RAATTY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.