Rmu_co8436023.1_g000001

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8436023.1
OG0010138
Physical Location & Seq
Reverse (-)
1 .. 1541
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8436023.1_g000001.1.cds

Sequence Viewer

Length: 341 bp
ggtttggggaacaactcagctgactacaagaagttggaggttacattgagagggtatggagtgtccacagtggttgctaaggtggcaagaattgattggctgaggaatgccgccggtttggtggacccgaattactggcggggaactctcagtcctcgccctgtgcttgattggtatttgaagagggtggatgaggctgtaaaagaggcaaaggagctagcacaaggtggacctttatccctagttggacattcggcaggaggatggcttgcacgtctctacatggaagaatatgggatatcagatatttccctgttattgactcttggaaccccccacca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGAP1

Protein Analysis

113

Amino Acids

12.37

Weight (kDa)

8.19

Isoelectric Point (pI)

21.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 111, 139
AdeI CACNNNGTG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 181
AjiI CACGTC 1 cut(s) 275
AloI GAACNNNNNNTCC 2 cut(s) 136, 168
AluBI AGCT 2 cut(s) 20, 217
AluI AGCT 2 cut(s) 20, 217
Alw26I GTCTC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 124, 230
AsuNHI GCTAGC 1 cut(s) 217
AvaII GGWCC 2 cut(s) 124, 230
BbvCI CCTCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 2 cut(s) 218, 242
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 2 cut(s) 124, 230
BmgBI CACGTC 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 124, 230
BmiI GGNNCC 2 cut(s) 126, 331
BmtI GCTAGC 1 cut(s) 221
Bpu10I CCTNAGC 2 cut(s) 78, 101
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 140
BseGI GGATG 2 cut(s) 196, 269
BseMII CTCAG 3 cut(s) 30, 92, 163
BseNI ACTGG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 112
BspACI CCGC 2 cut(s) 111, 139
BspCNI CTCAG 3 cut(s) 29, 93, 162
BspLI GGNNCC 2 cut(s) 126, 331
BspOI GCTAGC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 219, 270
BstDEI CTNAG 4 cut(s) 16, 78, 101, 149
BstF5I GGATG 2 cut(s) 196, 269
BstMAI GTCTC 1 cut(s) 281
BstMWI GCNNNNNNNGC 1 cut(s) 83
BtrI CACGTC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 196, 269
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 219, 270
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 124, 230
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 1 cut(s) 283
CviJI RGCY 5 cut(s) 20, 100, 197, 217, 268
CviKI_1 RGCY 5 cut(s) 20, 100, 197, 217, 268
DdeI CTNAG 4 cut(s) 16, 78, 101, 149
DraIII CACNNNGTG 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 124, 230
EcoRV GATATC 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 1 cut(s) 286
FaiI YATR 3 cut(s) 57, 284, 294
FatI CATG 1 cut(s) 282
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 2 cut(s) 203, 276
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 2 cut(s) 218, 242
GluI GCNGC 1 cut(s) 111
HapII CCGG 1 cut(s) 114
Hin1II CATG 1 cut(s) 286
HinfI GANTC 1 cut(s) 322
HpaII CCGG 1 cut(s) 114
Hpy166II GTNNAC 3 cut(s) 66, 124, 230
Hpy188I TCNGA 1 cut(s) 304
Hpy8I GTNNAC 3 cut(s) 66, 124, 230
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 4 cut(s) 16, 78, 101, 149
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 1 cut(s) 286
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 121, 127, 174, 243, 326
MaeI CTAG 2 cut(s) 218, 242
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 40
MboII GAAGA 2 cut(s) 193, 299
MluCI AATT 2 cut(s) 90, 130
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 2 cut(s) 15, 226
MnlI CCTC 8 cut(s) 31, 44, 96, 165, 177, 187, 199, 254
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 83
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 2 cut(s) 126, 331
PctI GAATGC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 126, 331
PspPI GGNCC 2 cut(s) 124, 230
PvuII CAGCTG 1 cut(s) 20
SatI GCNGC 1 cut(s) 111
Sau96I GGNCC 2 cut(s) 124, 230
SchI GAGTC 1 cut(s) 316
SetI ASST 7 cut(s) 22, 42, 84, 219, 229, 235, 277
SinI GGWCC 2 cut(s) 124, 230
Sse9I AATT 2 cut(s) 90, 130
SsiI CCGC 2 cut(s) 111, 139
SspMI CTAG 2 cut(s) 218, 242
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 277
TasI AATT 2 cut(s) 90, 130
TauI GCSGC 1 cut(s) 113
TscAI CASTG 1 cut(s) 75
TspRI CASTG 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 124, 230
XspI CTAG 2 cut(s) 218, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.