Rroxscaffold_4G00311270

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010138
Physical Location & Seq
Forward (+)
33638584 .. 33641838
3255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311270.1

Sequence Viewer

Length: 957 bp
ATGGCTATGCTTCTATCACCATTGAAACCCTTGGCCTACTCCACTTCTGCATTTTCTCAAGACCCATCATCATCGTACAGACCAGCTGTTCTTCTTCCAGTTAAGCTCATCTGGATTCTGGCTTCACTTTTTATAGGTTTGGGGAACAACTCAGCTGACTACAAGAAGTTGGAGATTACATTGAGAGGGTATGGAGTGTCCACAGTGGTTGCTAAGGTGGCAAGAATTGATTGGCTGAGGAATGCCGCCGGTTTGGTGGACCCGAATTACTGGCGGGGAACTCTCAGTCCTCGTCCTGTGCTTGATTGGTATTTGAAGAGGGTGGATGAGGCTGTAAAAGAGGCAAAGGAGCTAGCACAAGGTGGACCTTTATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGAAATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCCCACCAACCACCTCCAAAAGGTGTGTCAGGGGTTATTGATCAAACAAGGGGACTCCTGTATTATGTTGAAAAGAATTGCTCAAAAGCTGTTTACACTCCTGAACTGAAATATGTATGTATCGCTGGGAGGTATCTCCAAGGTACTCGCTTATTTGGCAACTCAAGTGGAAGTGTTGATTCTGCAATTCCAATAGAGAGTTTAGAACCCTCATCAGAGGTTGCTGTTATAAATGATGTGAGCACTTCAACATCAACCACACCCACTTTGCGTGCACGCTTCGTGGGGCAAGGGTATAAGCAGGTTTGTGGGGAGGCAGATGTTTGGGGTGATGGAGTTGTACCAGAAGTATCAGCTCATCTGGAGGGTGCACTCAATATTAGCATAGATGGTGTTTACCACTCACCAGTTGGTTCAGATGATATCTTAAGACCGTGGTATGGGTCTCCCGCAATTGTTGAGCAATGGATACATCACCTCCTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGAP1

Protein Analysis

318

Amino Acids

34.49

Weight (kDa)

6.31

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGAP1 PF07819 124 - 168 1.7e-06 PGAP1-like alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 698
Acc36I ACCTGC 1 cut(s) 760
AciI CCGC 3 cut(s) 246, 274, 918
AdeI CACNNNGTG 1 cut(s) 362
AfaI GTAC 3 cut(s) 77, 613, 810
AfiI CCNNNNNNNGG 2 cut(s) 488, 908
AflII CTTAAG 1 cut(s) 895
AgsI TTSAA 4 cut(s) 25, 316, 539, 717
AjiI CACGTC 1 cut(s) 410
AloI GAACNNNNNNTCC 2 cut(s) 271, 303
AluBI AGCT 7 cut(s) 86, 106, 155, 352, 557, 824, 954
AluI AGCT 7 cut(s) 86, 106, 155, 352, 557, 824, 954
Alw21I GWGCWC 3 cut(s) 713, 745, 841
Alw26I GTCTC 2 cut(s) 416, 918
Alw44I GTGCAC 2 cut(s) 741, 837
AoxI GGCC 1 cut(s) 33
ApaLI GTGCAC 2 cut(s) 741, 837
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AspS9I GGNCC 2 cut(s) 259, 365
AsuHPI GGTGA 4 cut(s) 9, 809, 864, 935
AsuNHI GCTAGC 1 cut(s) 352
AvaII GGWCC 2 cut(s) 259, 365
BaeGI GKGCMC 2 cut(s) 745, 841
Bbv12I GWGCWC 3 cut(s) 713, 745, 841
BbvCI CCTCAGC 1 cut(s) 236
BccI CCATC 4 cut(s) 73, 393, 794, 851
BciVI GTATCC 1 cut(s) 930
BclI TGATCA 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 416, 918
BfaI CTAG 2 cut(s) 353, 377
BfrI CTTAAG 1 cut(s) 895
BfuAI ACCTGC 1 cut(s) 760
BfuI GTATCC 1 cut(s) 930
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme18I GGWCC 2 cut(s) 259, 365
BmgBI CACGTC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 259, 365
BmiI GGNNCC 2 cut(s) 261, 466
BmtI GCTAGC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 851
Bpu10I CCTNAGC 3 cut(s) 213, 236, 950
BpuEI CTTGAG 2 cut(s) 42, 616
BsaI GGTCTC 1 cut(s) 918
BsaJI CCNNGG 3 cut(s) 30, 607, 902
BsaXI ACNNNNNCTCC 1 cut(s) 930
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 908
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 98, 275, 875
Bse3DI GCAATG 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 30, 607, 902
BseGI GGATG 2 cut(s) 331, 404
BseLI CCNNNNNNNGG 2 cut(s) 488, 908
BseMI GCAATG 1 cut(s) 938
BseMII CTCAG 4 cut(s) 165, 227, 298, 941
BseNI ACTGG 3 cut(s) 98, 275, 875
BseSI GKGCMC 2 cut(s) 745, 841
BseYI CCCAGC 1 cut(s) 593
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 3 cut(s) 713, 745, 841
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 488, 908
BsmAI GTCTC 2 cut(s) 416, 918
BsmBI CGTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 534
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 35
Bso31I GGTCTC 1 cut(s) 918
Bsp1286I GDGCHC 3 cut(s) 713, 745, 841
Bsp143I GATC 1 cut(s) 508
BspACI CCGC 3 cut(s) 246, 274, 918
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 4 cut(s) 164, 228, 297, 942
BspLI GGNNCC 2 cut(s) 261, 466
BspMI ACCTGC 1 cut(s) 760
BspOI GCTAGC 1 cut(s) 356
BspTI CTTAAG 1 cut(s) 895
BspTNI GGTCTC 1 cut(s) 918
BsrDI GCAATG 1 cut(s) 938
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 3 cut(s) 98, 275, 875
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 30, 607, 902
BssMI GATC 1 cut(s) 508
BssT1I CCWWGG 2 cut(s) 30, 607
Bst4CI ACNGT 2 cut(s) 205, 903
Bst6I CTCTTC 1 cut(s) 311
BstAFI CTTAAG 1 cut(s) 895
BstC8I GCNNGC 4 cut(s) 354, 405, 741, 745
BstDEI CTNAG 5 cut(s) 151, 213, 236, 284, 950
BstDSI CCRYGG 1 cut(s) 902
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 331, 404
BstKTI GATC 1 cut(s) 511
BstMAI GTCTC 2 cut(s) 416, 918
BstMBI GATC 1 cut(s) 508
BstMWI GCNNNNNNNGC 2 cut(s) 218, 624
BstSLI GKGCMC 2 cut(s) 745, 841
BsuI GTATCC 1 cut(s) 930
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 902
BtrI CACGTC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 331, 404
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 760
Cac8I GCNNGC 4 cut(s) 354, 405, 741, 745
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 259, 365
Csp6I GTAC 3 cut(s) 76, 612, 809
CspCI CAANNNNNGTGG 4 cut(s) 190, 225, 616, 651
CviAII CATG 1 cut(s) 418
CviQI GTAC 3 cut(s) 76, 612, 809
DdeI CTNAG 5 cut(s) 151, 213, 236, 284, 950
DpnI GATC 1 cut(s) 510
DpnII GATC 1 cut(s) 508
DraIII CACNNNGTG 1 cut(s) 362
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 30, 607
Eco31I GGTCTC 1 cut(s) 918
Eco32I GATATC 1 cut(s) 892
Eco47I GGWCC 2 cut(s) 259, 365
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 2 cut(s) 30, 607
ErhI CCWWGG 2 cut(s) 30, 607
Esp3I CGTCTC 1 cut(s) 416
FaeI CATG 1 cut(s) 421
FaqI GGGAC 1 cut(s) 534
FatI CATG 1 cut(s) 417
FauI CCCGC 2 cut(s) 267, 925
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 2 cut(s) 338, 411
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 353, 377
GluI GCNGC 1 cut(s) 246
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 851
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 249
Hin1II CATG 1 cut(s) 421
HinfI GANTC 4 cut(s) 115, 457, 522, 647
HpaII CCGG 1 cut(s) 249
HphI GGTGA 4 cut(s) 9, 809, 864, 935
Hpy166II GTNNAC 7 cut(s) 201, 259, 365, 562, 743, 839, 865
Hpy188I TCNGA 3 cut(s) 439, 685, 886
Hpy188III TCNNGA 5 cut(s) 59, 112, 569, 830, 949
Hpy8I GTNNAC 7 cut(s) 201, 259, 365, 562, 743, 839, 865
HpyCH4III ACNGT 2 cut(s) 205, 903
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 5 cut(s) 50, 407, 653, 743, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 624
HpyF3I CTNAG 5 cut(s) 151, 213, 236, 284, 950
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 1 cut(s) 508
LmnI GCTCC 1 cut(s) 349
MaeI CTAG 2 cut(s) 353, 377
MaeII ACGT 1 cut(s) 409
MalI GATC 1 cut(s) 510
MboI GATC 1 cut(s) 508
MboII GAAGA 4 cut(s) 83, 86, 328, 434
MfeI CAATTG 1 cut(s) 921
MhlI GDGCHC 3 cut(s) 713, 745, 841
MluCI AATT 5 cut(s) 225, 265, 544, 654, 921
MlyI GAGTC 2 cut(s) 451, 516
MmeI TCCRAC 2 cut(s) 150, 361
MseI TTAA 2 cut(s) 102, 896
MspA1I CMGCKG 2 cut(s) 86, 155
MspCI CTTAAG 1 cut(s) 895
MspI CCGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 921
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 218, 624
NdeII GATC 1 cut(s) 508
NheI GCTAGC 1 cut(s) 352
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 2 cut(s) 261, 466
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 2 cut(s) 115, 647
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 2 cut(s) 451, 516
PpsI GAGTC 2 cut(s) 451, 516
PsiI TTATAA 1 cut(s) 698
PspFI CCCAGC 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 261, 466
PspPI GGNCC 2 cut(s) 259, 365
PvuII CAGCTG 2 cut(s) 86, 155
RsaI GTAC 3 cut(s) 77, 613, 810
RsaNI GTAC 3 cut(s) 76, 612, 809
SaqAI TTAA 2 cut(s) 102, 896
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 508
Sau96I GGNCC 2 cut(s) 259, 365
SchI GAGTC 2 cut(s) 451, 516
SduI GDGCHC 3 cut(s) 713, 745, 841
SinI GGWCC 2 cut(s) 259, 365
SmlI CTYRAG 3 cut(s) 57, 631, 895
SmoI CTYRAG 3 cut(s) 57, 631, 895
Sse9I AATT 5 cut(s) 225, 265, 544, 654, 921
SsiI CCGC 3 cut(s) 246, 274, 918
SspI AATATT 1 cut(s) 847
SspMI CTAG 2 cut(s) 353, 377
StyI CCWWGG 2 cut(s) 30, 607
TaaI ACNGT 2 cut(s) 205, 903
TaiI ACGT 1 cut(s) 412
TasI AATT 5 cut(s) 225, 265, 544, 654, 921
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 2 cut(s) 115, 647
Tru1I TTAA 2 cut(s) 102, 896
Tru9I TTAA 2 cut(s) 102, 896
TscAI CASTG 1 cut(s) 210
TspRI CASTG 1 cut(s) 210
Vha464I CTTAAG 1 cut(s) 895
VneI GTGCAC 2 cut(s) 741, 837
VpaK11BI GGWCC 2 cut(s) 259, 365
XagI CCTNNNNNAGG 1 cut(s) 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 875
XspI CTAG 2 cut(s) 353, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.