Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010138

Physical Location & Seq

Genomic Coordinates Reverse (-)

36375847 .. 36378957

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG164800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTGATGGCTATGCTTCTATCACCATTGAAACCCTTGGCCTACTCCACTTCTGCATTTTCTCAAGACCCATCATCATCGTACAGACCAGCTGTTCTTCTTCCAGGTTTGGGGAACAACTCAGCTGACTACAAGAAGTTGGAGGTTACATTGAGAGGGTATGGAGTGTCCACAGTGGTTGCTAAGGTGGCAAGAATTGATTGGCTGAGGAATGCCGCCGGTTTGGTGGACCCGAATTACTGGCGGGGAACTCTCAGTCCTCGCCCTGTGCTTGATTGGTATTTGAAGAGGGTGGATGAGGCTGTAAAAGAGGCAAAGGAGCTAACACAAGGTGGACCTTTATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGAAATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCTCACCAACCACCTCCAAAAGGTGTGTCAGGGGTTATTGATCAAACAAGGGGACTCCTGTATTATGTTGAAAAGAATTGCTCAAAAGCTGTTTACACTCCTGAACTGAAATATGTATGTATCGCTGGGAGGTATCTCCAAGGTGCTCGCTTATTTGGCAATTCAAGTGAAAGTGTTGATTCTGCAATTCCAATAGAGAGTTTAGAACCCTCATCAGAGGTTGCTGTTATAAATGATGTGAGCACTTCAACATCAACCACACCCACTTTGCGTGCACGCTTTGTGGGGCAAGGGTATAAGCAGGTAAAACCCAATTGTCTCAGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGAP1

Protein Analysis

255

Amino Acids

27.69

Weight (kDa)

8.99

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	32 - 143	3.1e-06	Alpha/beta hydrolase family
PGAP1	PF07819	114 - 153	2.2e-06	PGAP1-like alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17670
fragaria_vesca	FvH4_7g08340
malus_domestica	MD02G1231900.v1.1 MD07G1081500.v1.1
prunus_persica	Prupe.2G106800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340711
rosa_laevigata	RLG00000029037
rosa_multiflora	Rmu_co8436023.1_g000001 Rmu_sc0000566.1_g000056
rosa_roxburghii	Rroxscaffold_4G00311210 Rroxscaffold_4G00311270 Rroxscaffold_4G00315910
rosa_rugosa	Rorug01G0161900.1
rosa_samantha	Rh1BG145100 Rh1BG146500 Rh1CG164800 Rh1DG176700 Rh1DG178600
rosa_wichuraiana	Rw0G010010 Rw1G014610 Rw1G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
Acc36I	ACCTGC	1 cut(s)	730
AciI	CCGC	2 cut(s)	216, 244
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	110, 458
AgsI	TTSAA	5 cut(s)	31, 286, 509, 603, 687
AjiI	CACGTC	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	103
AloI	GAACNNNNNNTCC	2 cut(s)	241, 273
AluBI	AGCT	4 cut(s)	92, 125, 322, 527
AluI	AGCT	4 cut(s)	92, 125, 322, 527
Alw21I	GWGCWC	3 cut(s)	586, 683, 715
Alw26I	GTCTC	2 cut(s)	386, 761
Alw44I	GTGCAC	1 cut(s)	711
AoxI	GGCC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	711
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AspS9I	GGNCC	2 cut(s)	229, 335
AsuHPI	GGTGA	3 cut(s)	15, 16, 434
AvaII	GGWCC	2 cut(s)	229, 335
BaeGI	GKGCMC	1 cut(s)	715
Bbv12I	GWGCWC	3 cut(s)	586, 683, 715
BbvCI	CCTCAGC	1 cut(s)	206
BccI	CCATC	2 cut(s)	79, 363
BciT130I	CCWGG	1 cut(s)	105
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	2 cut(s)	386, 761
BfaI	CTAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	730
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	2 cut(s)	229, 335
BmgBI	CACGTC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	229, 335
BmiI	GGNNCC	2 cut(s)	231, 436
BmrFI	CCNGG	1 cut(s)	105
Bpu10I	CCTNAGC	2 cut(s)	183, 206
BpuEI	CTTGAG	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	36, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 458
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	36, 577
BseGI	GGATG	2 cut(s)	301, 374
BseLI	CCNNNNNNNGG	2 cut(s)	110, 458
BseMII	CTCAG	3 cut(s)	135, 197, 268
BseNI	ACTGG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	715
BseYI	CCCAGC	1 cut(s)	563
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	3 cut(s)	586, 683, 715
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	110, 458
BsmAI	GTCTC	2 cut(s)	386, 761
BsmBI	CGTCTC	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	504
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	3 cut(s)	586, 683, 715
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	2 cut(s)	216, 244
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	3 cut(s)	134, 198, 267
BspLI	GGNNCC	2 cut(s)	231, 436
BspMI	ACCTGC	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	36, 577
BssMI	GATC	1 cut(s)	478
BssT1I	CCWWGG	2 cut(s)	36, 577
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	281
BstC8I	GCNNGC	4 cut(s)	375, 586, 711, 715
BstDEI	CTNAG	5 cut(s)	121, 183, 206, 254, 758
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	301, 374
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	386, 761
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 594
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstSLI	GKGCMC	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	41
BtrI	CACGTC	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	301, 374
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	4 cut(s)	375, 586, 711, 715
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	229, 335
Csp6I	GTAC	1 cut(s)	82
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	9 cut(s)	11, 41, 92, 125, 205, 302, 322, 373, 527
CviKI_1	RGCY	9 cut(s)	11, 41, 92, 125, 205, 302, 322, 373, 527
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	5 cut(s)	121, 183, 206, 254, 758
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DraIII	CACNNNGTG	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	36, 577
Eco47I	GGWCC	2 cut(s)	229, 335
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	36, 577
ErhI	CCWWGG	2 cut(s)	36, 577
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	1 cut(s)	391
FaiI	YATR	9 cut(s)	14, 162, 389, 399, 504, 552, 556, 668, 735
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	1 cut(s)	387
FauI	CCCGC	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	308, 381
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	1 cut(s)	391
HinfI	GANTC	3 cut(s)	427, 492, 617
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	15, 16, 434
Hpy166II	GTNNAC	5 cut(s)	171, 229, 335, 532, 713
Hpy188I	TCNGA	2 cut(s)	409, 655
Hpy188III	TCNNGA	2 cut(s)	65, 539
Hpy8I	GTNNAC	5 cut(s)	171, 229, 335, 532, 713
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	56, 377, 623, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 594
HpyF3I	CTNAG	5 cut(s)	121, 183, 206, 254, 758
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	4 cut(s)	89, 92, 298, 404
MfeI	CAATTG	1 cut(s)	751
MhlI	GDGCHC	3 cut(s)	586, 683, 715
MluCI	AATT	6 cut(s)	195, 235, 514, 598, 624, 751
MlyI	GAGTC	2 cut(s)	421, 486
MmeI	TCCRAC	2 cut(s)	120, 331
MseI	TTAA	1 cut(s)	766
MspA1I	CMGCKG	2 cut(s)	92, 125
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	188, 594
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	2 cut(s)	231, 436
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	617
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	2 cut(s)	421, 486
PpsI	GAGTC	2 cut(s)	421, 486
PsiI	TTATAA	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	231, 436
PspPI	GGNCC	2 cut(s)	229, 335
PvuII	CAGCTG	2 cut(s)	92, 125
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	766
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	2 cut(s)	229, 335
SchI	GAGTC	2 cut(s)	421, 486
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	3 cut(s)	586, 683, 715
SinI	GGWCC	2 cut(s)	229, 335
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	6 cut(s)	195, 235, 514, 598, 624, 751
SsiI	CCGC	2 cut(s)	216, 244
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	2 cut(s)	36, 577
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	382
TasI	AATT	6 cut(s)	195, 235, 514, 598, 624, 751
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	1 cut(s)	766
Tru9I	TTAA	1 cut(s)	766
TscAI	CASTG	1 cut(s)	180
TspRI	CASTG	1 cut(s)	180
VneI	GTGCAC	1 cut(s)	711
VpaK11BI	GGWCC	2 cut(s)	229, 335
XagI	CCTNNNNNAGG	1 cut(s)	456
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.