Rh1BG145100

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010138
Physical Location & Seq
Reverse (-)
23989029 .. 23990569
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG145100.1

Sequence Viewer

Length: 450 bp
ATGGTGATGGCTATGCTTCTATCACCATTGAAACCCTTGGCCTACTCCACTTCTGCATTTTCTCAAGACCCATCATCATCATACAGACCAGCTGTTCTTCTTCCAGGTTTGGGGAACAACTCAGCTGACTACAAGAAGTTGGAGGTTACATTGAGAGGGTATGGAGTGTCCACAGTGGTTGCTAAGGTGGCAAGAATTGATTGGCTGAGGAATGCCGCCGGTTTGGTGGACCCGAATTACTGGCGGGGAACTCTCAGTCCTCGTCCTGTGCTTGATTGGTATTTGAAGAGGGTGGATGAGGCTGTAAAAGAGGCAAAGGAGCTAGCACAAGGTGGACCTTTATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGAAATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCCCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGAP1

Protein Analysis

149

Amino Acids

16.26

Weight (kDa)

9.15

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 32 - 130 2.6e-06 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 216, 244
AdeI CACNNNGTG 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 31, 286
AjiI CACGTC 1 cut(s) 380
AjnI CCWGG 1 cut(s) 103
AloI GAACNNNNNNTCC 2 cut(s) 241, 273
AluBI AGCT 3 cut(s) 92, 125, 322
AluI AGCT 3 cut(s) 92, 125, 322
Alw26I GTCTC 1 cut(s) 386
AoxI GGCC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 229, 335
AsuHPI GGTGA 2 cut(s) 15, 16
AsuNHI GCTAGC 1 cut(s) 322
AvaII GGWCC 2 cut(s) 229, 335
BbvCI CCTCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 79, 363
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 2 cut(s) 323, 347
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 229, 335
BmgBI CACGTC 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 229, 335
BmiI GGNNCC 2 cut(s) 231, 436
BmrFI CCNGG 1 cut(s) 105
BmtI GCTAGC 1 cut(s) 326
Bpu10I CCTNAGC 2 cut(s) 183, 206
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 245, 445
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 301, 374
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 3 cut(s) 135, 197, 268
BseNI ACTGG 2 cut(s) 245, 445
BshFI GGCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 386
BsmBI CGTCTC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 41
BspACI CCGC 2 cut(s) 216, 244
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 3 cut(s) 134, 198, 267
BspLI GGNNCC 2 cut(s) 231, 436
BspOI GCTAGC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 2 cut(s) 245, 445
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 324, 375
BstDEI CTNAG 4 cut(s) 121, 183, 206, 254
BstF5I GGATG 2 cut(s) 301, 374
BstMAI GTCTC 1 cut(s) 386
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 41
BtrI CACGTC 1 cut(s) 380
BtsCI GGATG 2 cut(s) 301, 374
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 324, 375
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 229, 335
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 1 cut(s) 388
CviJI RGCY 8 cut(s) 11, 41, 92, 125, 205, 302, 322, 373
CviKI_1 RGCY 8 cut(s) 11, 41, 92, 125, 205, 302, 322, 373
DdeI CTNAG 4 cut(s) 121, 183, 206, 254
DraIII CACNNNGTG 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 229, 335
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 1 cut(s) 391
FaiI YATR 5 cut(s) 14, 82, 162, 389, 399
FatI CATG 1 cut(s) 387
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 308, 381
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 323, 347
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 219
Hin1II CATG 1 cut(s) 391
HinfI GANTC 1 cut(s) 427
HpaII CCGG 1 cut(s) 219
HphI GGTGA 2 cut(s) 15, 16
Hpy166II GTNNAC 3 cut(s) 171, 229, 335
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 3 cut(s) 171, 229, 335
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 2 cut(s) 56, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 4 cut(s) 121, 183, 206, 254
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 1 cut(s) 391
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 90, 102, 117, 226, 232, 279, 348, 431
MaeI CTAG 2 cut(s) 323, 347
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 145
MboII GAAGA 4 cut(s) 89, 92, 298, 404
MluCI AATT 2 cut(s) 195, 235
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 2 cut(s) 120, 331
MnlI CCTC 8 cut(s) 136, 149, 201, 270, 282, 292, 304, 359
MspA1I CMGCKG 2 cut(s) 92, 125
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 188
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 2 cut(s) 231, 436
PctI GAATGC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 231, 436
PspPI GGNCC 2 cut(s) 229, 335
PvuII CAGCTG 2 cut(s) 92, 125
SatI GCNGC 1 cut(s) 216
Sau96I GGNCC 2 cut(s) 229, 335
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 105
SetI ASST 9 cut(s) 94, 109, 127, 147, 189, 324, 334, 340, 382
SinI GGWCC 2 cut(s) 229, 335
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 2 cut(s) 195, 235
SsiI CCGC 2 cut(s) 216, 244
SspMI CTAG 2 cut(s) 323, 347
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 382
TasI AATT 2 cut(s) 195, 235
TauI GCSGC 1 cut(s) 218
TscAI CASTG 1 cut(s) 180
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 2 cut(s) 229, 335
XspI CTAG 2 cut(s) 323, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.