Rroxscaffold_4G00315910

PGAP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010138
Physical Location & Seq
Reverse (-)
40506923 .. 40510142
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315910.1

Sequence Viewer

Length: 546 bp
ATGGTGATGGCTATGCTTCTATCACCATTGAAACCCTTGGCCTACTCCACTTCTGCATTTTCTCAAAACCCATCATCATCATACAAACCAGCTGTTCTTCTTCCAGGTTTGGGGAACAACTCAGCTGACTACAAGAAGTTGGAGATTACATTGAGAGGGTATGGAGTGTCCACAGTGGTTGCTAAGGTGGCAAGAATTGATTGGCTGAGGAATGCCGCCGGTTTGGTGGACCCGAATTACTGGCGGGGAACTCTCAGTCCTCGCCCTGTGCTTAATTGGTATTTGAAGAGGGTGGATGAGGCTGTAAAAGAGGCAAAGGAGCTAGCACAAGGTGGACCTATATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGAAATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCCACCAACCACCTCCAAAAGGTGTGTCAGGGGTTATTGATCAAACAAGGGGACTCCTGTATTATGTTGAAAAGAATTGCTCAAAAGCTGTTTACACTCCTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGAP1

Protein Analysis

181

Amino Acids

19.83

Weight (kDa)

9.64

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_6 PF12697 32 - 136 3.2e-06 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 216, 244
AdeI CACNNNGTG 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 110, 457
AgsI TTSAA 3 cut(s) 31, 286, 508
AjiI CACGTC 1 cut(s) 380
AjnI CCWGG 1 cut(s) 103
AloI GAACNNNNNNTCC 2 cut(s) 241, 273
AluBI AGCT 4 cut(s) 92, 125, 322, 526
AluI AGCT 4 cut(s) 92, 125, 322, 526
Alw26I GTCTC 1 cut(s) 386
AoxI GGCC 1 cut(s) 39
ArsI GACNNNNNNTTYG 2 cut(s) 448, 480
AspS9I GGNCC 2 cut(s) 229, 335
AsuHPI GGTGA 2 cut(s) 15, 16
AsuNHI GCTAGC 1 cut(s) 322
AvaII GGWCC 2 cut(s) 229, 335
BbvCI CCTCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 79, 363
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 2 cut(s) 323, 347
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 229, 335
BmgBI CACGTC 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 229, 335
BmiI GGNNCC 2 cut(s) 231, 436
BmrFI CCNGG 1 cut(s) 105
BmtI GCTAGC 1 cut(s) 326
Bpu10I CCTNAGC 2 cut(s) 183, 206
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 457
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 301, 374
BseLI CCNNNNNNNGG 2 cut(s) 110, 457
BseMII CTCAG 3 cut(s) 135, 197, 268
BseNI ACTGG 1 cut(s) 245
BshFI GGCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 110, 457
BsmAI GTCTC 1 cut(s) 386
BsmBI CGTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 477
BspACI CCGC 2 cut(s) 216, 244
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 3 cut(s) 134, 198, 267
BspLI GGNNCC 2 cut(s) 231, 436
BspOI GCTAGC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 324, 375
BstDEI CTNAG 4 cut(s) 121, 183, 206, 254
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 2 cut(s) 301, 374
BstKTI GATC 1 cut(s) 480
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 1 cut(s) 477
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 41
BtrI CACGTC 1 cut(s) 380
BtsCI GGATG 2 cut(s) 301, 374
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 324, 375
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 229, 335
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 1 cut(s) 388
CviJI RGCY 9 cut(s) 11, 41, 92, 125, 205, 302, 322, 373, 526
CviKI_1 RGCY 9 cut(s) 11, 41, 92, 125, 205, 302, 322, 373, 526
DdeI CTNAG 4 cut(s) 121, 183, 206, 254
DpnI GATC 1 cut(s) 479
DpnII GATC 1 cut(s) 477
DraIII CACNNNGTG 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 229, 335
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 1 cut(s) 391
FaiI YATR 7 cut(s) 14, 82, 162, 341, 389, 399, 503
FaqI GGGAC 1 cut(s) 503
FatI CATG 1 cut(s) 387
FauI CCCGC 1 cut(s) 237
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 308, 381
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 323, 347
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 219
Hin1II CATG 1 cut(s) 391
HinfI GANTC 2 cut(s) 427, 491
HpaII CCGG 1 cut(s) 219
HphI GGTGA 2 cut(s) 15, 16
Hpy166II GTNNAC 4 cut(s) 171, 229, 335, 531
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 4 cut(s) 171, 229, 335, 531
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 2 cut(s) 56, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 4 cut(s) 121, 183, 206, 254
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 319
MaeI CTAG 2 cut(s) 323, 347
MaeII ACGT 1 cut(s) 379
MalI GATC 1 cut(s) 479
MboI GATC 1 cut(s) 477
MboII GAAGA 4 cut(s) 89, 92, 298, 404
MluCI AATT 4 cut(s) 195, 235, 274, 513
MlyI GAGTC 2 cut(s) 421, 485
MmeI TCCRAC 2 cut(s) 120, 331
MnlI CCTC 8 cut(s) 149, 201, 270, 282, 292, 304, 359, 461
MseI TTAA 1 cut(s) 273
MspA1I CMGCKG 2 cut(s) 92, 125
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 477
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 2 cut(s) 231, 436
PctI GAATGC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 2 cut(s) 421, 485
PpsI GAGTC 2 cut(s) 421, 485
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 231, 436
PspPI GGNCC 2 cut(s) 229, 335
PvuII CAGCTG 2 cut(s) 92, 125
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 477
Sau96I GGNCC 2 cut(s) 229, 335
SchI GAGTC 2 cut(s) 421, 485
ScrFI CCNGG 1 cut(s) 105
SinI GGWCC 2 cut(s) 229, 335
Sse9I AATT 4 cut(s) 195, 235, 274, 513
SsiI CCGC 2 cut(s) 216, 244
SspMI CTAG 2 cut(s) 323, 347
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 382
TasI AATT 4 cut(s) 195, 235, 274, 513
TauI GCSGC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 180
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 2 cut(s) 229, 335
XagI CCTNNNNNAGG 1 cut(s) 455
XspI CTAG 2 cut(s) 323, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.