Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00413

Orthogroup ID

OG0010138

Physical Location & Seq

Genomic Coordinates Reverse (-)

68667 .. 71339

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGTTTAAGTATGGTGATGGCTATGCTTCTATCACCATTGAAACCCTTGACCCATCATCATCGTACAGACCAGCTGTTCTTCTTCCAGGTTTGGGGAACAATTCAGCTGACTACAAGAAGTTGGAGGTTACATTGAGAGGGTATGGAGTGTCCACAGTGGTTGCTAAGGTGGCAAGAATTGATTGGCTGAGGAATGCCGCCGGTTTGGTGGACCCGAATTACTGGCGGGGAACTCTCAGTCCTCGCCCTGTGCTTGATTGGTATTTGAACAGGGTGGATGAGGCTGTAAAAGAGGCAAAGGAGCTAGCACAAGGTGGACCTTTATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGAAATCAGATTTCCCTTTATTGACTCTTGGAACCCCCCACCAACCACCTCCAAAAGGTGTGTCAGGGGTTATTGATCAAACAAGGGGACTCCTGTATTATGTTGAAAAGAATTGCTCAAAAGCTGTTTACACTCCTGAACTGAAATATGTATGTATCGCTGGGAGGTATCTCCAAGGTGCTCGCTTATTTGGCAATTCAAGTGAAAGTGTTGATTCTGCAATTCCAATAGAGAGTTTAGAACCCTCATCAGAGGTTGCTGTTATAAATGATGTAAGCACTTCAACATCAACCACACCCACTTTGCGTGCACGCTTCGTGGGGCAAGGGTATAAGCAGGTTTGTGGGCAGGCAGATGTTTGGGGTGATGGAGTTGTACCAGAAGTATCAGCTCATCTGGAGGGTGCTCTCAATATTAGCATAGATGGTGTTTACCACTCACCAGTTGGTTCAGATGATATCTTAAGACCGTGGTATGGGTCTCCCGCAATTGTTGAGCAATGGGTACATCACCTCCTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGAP1

Protein Analysis

302

Amino Acids

32.77

Weight (kDa)

5.55

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17670
fragaria_vesca	FvH4_7g08340
malus_domestica	MD02G1231900.v1.1 MD07G1081500.v1.1
prunus_persica	Prupe.2G106800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340711
rosa_laevigata	RLG00000029037
rosa_multiflora	Rmu_co8436023.1_g000001 Rmu_sc0000566.1_g000056
rosa_roxburghii	Rroxscaffold_4G00311210 Rroxscaffold_4G00311270 Rroxscaffold_4G00315910
rosa_rugosa	Rorug01G0161900.1
rosa_samantha	Rh1BG145100 Rh1BG146500 Rh1CG164800 Rh1DG176700 Rh1DG178600
rosa_wichuraiana	Rw0G010010 Rw1G014610 Rw1G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	712
AciI	CCGC	3 cut(s)	201, 229, 870
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	3 cut(s)	68, 762, 891
AfiI	CCNNNNNNNGG	3 cut(s)	95, 440, 860
AflII	CTTAAG	1 cut(s)	847
AgsI	TTSAA	5 cut(s)	44, 271, 491, 585, 669
AjiI	CACGTC	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	88
AloI	GAACNNNNNNTCC	2 cut(s)	226, 258
AluBI	AGCT	6 cut(s)	77, 110, 307, 509, 776, 906
AluI	AGCT	6 cut(s)	77, 110, 307, 509, 776, 906
Alw21I	GWGCWC	3 cut(s)	568, 697, 793
Alw26I	GTCTC	2 cut(s)	371, 870
Alw44I	GTGCAC	1 cut(s)	693
ApaLI	GTGCAC	1 cut(s)	693
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspS9I	GGNCC	2 cut(s)	214, 320
AsuHPI	GGTGA	5 cut(s)	28, 29, 761, 816, 887
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	214, 320
BaeGI	GKGCMC	1 cut(s)	697
Bbv12I	GWGCWC	3 cut(s)	568, 697, 793
BbvCI	CCTCAGC	1 cut(s)	191
BccI	CCATC	5 cut(s)	14, 64, 348, 746, 803
BciT130I	CCWGG	1 cut(s)	90
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	371, 870
BfaI	CTAG	2 cut(s)	308, 332
BfrI	CTTAAG	1 cut(s)	847
BfuAI	ACCTGC	1 cut(s)	712
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	2 cut(s)	214, 320
BmgBI	CACGTC	1 cut(s)	365
BmgT120I	GGNCC	2 cut(s)	214, 320
BmiI	GGNNCC	2 cut(s)	216, 418
BmrFI	CCNGG	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	803
Bpu10I	CCTNAGC	3 cut(s)	168, 191, 902
BsaI	GGTCTC	1 cut(s)	870
BsaJI	CCNNGG	2 cut(s)	559, 854
BsaXI	ACNNNNNCTCC	1 cut(s)	882
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 440, 860
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	230, 827
Bse3DI	GCAATG	1 cut(s)	890
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	559, 854
BseGI	GGATG	2 cut(s)	286, 359
BseLI	CCNNNNNNNGG	3 cut(s)	95, 440, 860
BseMI	GCAATG	1 cut(s)	890
BseMII	CTCAG	3 cut(s)	182, 253, 893
BseNI	ACTGG	2 cut(s)	230, 827
BseSI	GKGCMC	1 cut(s)	697
BseYI	CCCAGC	1 cut(s)	545
BsiHKAI	GWGCWC	3 cut(s)	568, 697, 793
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	3 cut(s)	95, 440, 860
BsmAI	GTCTC	2 cut(s)	371, 870
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	870
Bsp1286I	GDGCHC	3 cut(s)	568, 697, 793
Bsp143I	GATC	1 cut(s)	460
BspACI	CCGC	3 cut(s)	201, 229, 870
BspCNI	CTCAG	3 cut(s)	183, 252, 894
BspLI	GGNNCC	2 cut(s)	216, 418
BspMI	ACCTGC	1 cut(s)	712
BspOI	GCTAGC	1 cut(s)	311
BspTI	CTTAAG	1 cut(s)	847
BspTNI	GGTCTC	1 cut(s)	870
BsrDI	GCAATG	1 cut(s)	890
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	230, 827
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	559, 854
BssMI	GATC	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	160, 855
BstAFI	CTTAAG	1 cut(s)	847
BstC8I	GCNNGC	6 cut(s)	309, 360, 568, 693, 697, 735
BstDEI	CTNAG	4 cut(s)	168, 191, 239, 902
BstDSI	CCRYGG	1 cut(s)	854
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	286, 359
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	2 cut(s)	371, 870
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 576
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	697
BtgI	CCRYGG	1 cut(s)	854
BtrI	CACGTC	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	286, 359
BtsIMutI	CAGTG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	6 cut(s)	309, 360, 568, 693, 697, 735
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	214, 320
Csp6I	GTAC	3 cut(s)	67, 761, 890
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	1 cut(s)	373
CviQI	GTAC	3 cut(s)	67, 761, 890
DdeI	CTNAG	4 cut(s)	168, 191, 239, 902
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
DraIII	CACNNNGTG	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	559
Eco31I	GGTCTC	1 cut(s)	870
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	2 cut(s)	214, 320
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	844
EcoT14I	CCWWGG	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	1 cut(s)	376
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	1 cut(s)	372
FauI	CCCGC	2 cut(s)	222, 877
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	293, 366
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	308, 332
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	803
HapII	CCGG	1 cut(s)	204
Hin1II	CATG	1 cut(s)	376
HinfI	GANTC	3 cut(s)	409, 474, 599
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	5 cut(s)	28, 29, 761, 816, 887
Hpy166II	GTNNAC	6 cut(s)	156, 214, 320, 514, 695, 817
Hpy188I	TCNGA	3 cut(s)	394, 637, 838
Hpy188III	TCNNGA	3 cut(s)	521, 782, 901
Hpy8I	GTNNAC	6 cut(s)	156, 214, 320, 514, 695, 817
HpyCH4III	ACNGT	2 cut(s)	160, 855
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	362, 605, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 576
HpyF3I	CTNAG	4 cut(s)	168, 191, 239, 902
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	308, 332
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	3 cut(s)	74, 77, 389
MfeI	CAATTG	1 cut(s)	873
MhlI	GDGCHC	3 cut(s)	568, 697, 793
MluCI	AATT	7 cut(s)	103, 180, 220, 496, 580, 606, 873
MlyI	GAGTC	2 cut(s)	403, 468
MmeI	TCCRAC	2 cut(s)	105, 316
MseI	TTAA	2 cut(s)	9, 848
MspA1I	CMGCKG	2 cut(s)	77, 110
MspCI	CTTAAG	1 cut(s)	847
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	90
MunI	CAATTG	1 cut(s)	873
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	173, 576
NdeII	GATC	1 cut(s)	460
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	2 cut(s)	216, 418
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	599
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	2 cut(s)	403, 468
PpsI	GAGTC	2 cut(s)	403, 468
PsiI	TTATAA	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	216, 418
PspPI	GGNCC	2 cut(s)	214, 320
PvuII	CAGCTG	2 cut(s)	77, 110
RsaI	GTAC	3 cut(s)	68, 762, 891
RsaNI	GTAC	3 cut(s)	67, 761, 890
SaqAI	TTAA	2 cut(s)	9, 848
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	2 cut(s)	214, 320
SchI	GAGTC	2 cut(s)	403, 468
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	3 cut(s)	568, 697, 793
SinI	GGWCC	2 cut(s)	214, 320
SmlI	CTYRAG	1 cut(s)	847
SmoI	CTYRAG	1 cut(s)	847
Sse9I	AATT	7 cut(s)	103, 180, 220, 496, 580, 606, 873
SsiI	CCGC	3 cut(s)	201, 229, 870
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	2 cut(s)	308, 332
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	2 cut(s)	160, 855
TaiI	ACGT	1 cut(s)	367
TasI	AATT	7 cut(s)	103, 180, 220, 496, 580, 606, 873
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	2 cut(s)	9, 848
Tru9I	TTAA	2 cut(s)	9, 848
TscAI	CASTG	1 cut(s)	165
TspRI	CASTG	1 cut(s)	165
Vha464I	CTTAAG	1 cut(s)	847
VneI	GTGCAC	1 cut(s)	693
VpaK11BI	GGWCC	2 cut(s)	214, 320
XagI	CCTNNNNNAGG	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XspI	CTAG	2 cut(s)	308, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.