Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Reverse (-)

5864182 .. 5866809

Gene Structure 2628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGATACCGAGTTTCTCCGAACCCTAGATCGTCAGATTCTTTTGGGTGTCTTCGTTGCTTTCGTCGCCGTTGGTGCTGGTGCTGCTTATTTTCTTACATCCTCCAAGAAACGCAGAGTGTGTTTGGATCCAGAGAATTTCAAGGAGTTCAAGCTTGTTAAGAGACATCAGCTTAGTCACAATGTGGCCAAGTTCGTTTTTGAACTCCCAACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAGATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTGTTGGAGACCATCTTGCCGTAAAGGGACCAAAGGGTAGGTTCAAGTATCAACCAGGTCAGTTTAGGGCATTTGGAATGCTTGCTGGAGGTTCAGGCATCACTCCCATGTTCCAAGTGGCCAGAGCAATTCTAGAAAACCCAACAGACAAGACAAAGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCTATGTTTTGAACCAGCCTCCGGAAGTATGGGATGGTGGTGTTGGATTTGTATCAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTTGAAGCTCTGGGATACTCTCCGGAGATGCAATTCCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

281

Amino Acids

31.49

Weight (kDa)

8.57

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	50 - 148	8.6e-34	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	158 - 264	6.3e-30	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc36I	ACCTGC	1 cut(s)	745
AccIII	TCCGGA	2 cut(s)	670, 823
AciI	CCGC	3 cut(s)	359, 765, 773
AclWI	GGATC	3 cut(s)	122, 135, 748
AcoI	YGGCCR	2 cut(s)	186, 513
AcsI	RAATTY	1 cut(s)	136
AdeI	CACNNNGTG	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	670
AgsI	TTSAA	7 cut(s)	142, 151, 203, 439, 598, 661, 806
AjnI	CCWGG	1 cut(s)	448
AjuI	GAANNNNNNNTTGG	4 cut(s)	202, 234, 590, 622
AluBI	AGCT	3 cut(s)	154, 172, 809
AluI	AGCT	3 cut(s)	154, 172, 809
Alw26I	GTCTC	3 cut(s)	157, 378, 396
AlwI	GGATC	3 cut(s)	122, 135, 748
Aor13HI	TCCGGA	2 cut(s)	670, 823
AoxI	GGCC	3 cut(s)	186, 513, 786
ApeKI	GCWGC	2 cut(s)	83, 794
ApoI	RAATTY	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	714
AspS9I	GGNCC	2 cut(s)	422, 767
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	422, 767
BalI	TGGCCA	2 cut(s)	188, 515
BamHI	GGATCC	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	43, 224
BbvI	GCAGC	2 cut(s)	70, 781
BccI	CCATC	3 cut(s)	263, 414, 677
BceAI	ACGGC	2 cut(s)	53, 398
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	2 cut(s)	366, 809
BcoDI	GTCTC	3 cut(s)	157, 378, 396
BfaI	CTAG	2 cut(s)	26, 527
BfuAI	ACCTGC	1 cut(s)	745
BfuI	GTATCC	2 cut(s)	366, 809
BisI	GCNGC	2 cut(s)	84, 795
BlsI	GCNGC	2 cut(s)	85, 796
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	2 cut(s)	422, 767
BmgT120I	GGNCC	2 cut(s)	422, 767
BmiI	GGNNCC	2 cut(s)	129, 423
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	6 cut(s)	381, 501, 565, 749, 752, 819
BoxI	GACNNNNGTC	1 cut(s)	370
BpiI	GAAGAC	2 cut(s)	43, 224
BpmI	CTGGAG	1 cut(s)	501
Bpu14I	TTCGAA	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	700
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	789
BsaWI	WCCGGW	2 cut(s)	670, 823
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	1 cut(s)	838
Bse3DI	GCAATG	1 cut(s)	724
Bse8I	GATNNNNATC	1 cut(s)	700
BseAI	TCCGGA	2 cut(s)	670, 823
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	5 cut(s)	98, 274, 289, 375, 688
BseJI	GATNNNNATC	1 cut(s)	700
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	1 cut(s)	724
BseNI	ACTGG	1 cut(s)	838
BseXI	GCAGC	2 cut(s)	70, 781
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	3 cut(s)	188, 515, 788
BsiSI	CCGG	2 cut(s)	671, 824
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	3 cut(s)	157, 378, 396
BsmFI	GGGAC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	188, 515, 788
Bso31I	GGTCTC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	336
Bsp13I	TCCGGA	2 cut(s)	670, 823
Bsp143I	GATC	3 cut(s)	28, 127, 753
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	3 cut(s)	359, 765, 773
BspANI	GGCC	3 cut(s)	188, 515, 788
BspEI	TCCGGA	2 cut(s)	670, 823
BspLI	GGNNCC	2 cut(s)	129, 423
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	3 cut(s)	122, 135, 748
BspT104I	TTCGAA	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	3 cut(s)	28, 127, 753
BssT1I	CCWWGG	1 cut(s)	789
Bst2UI	CCWGG	1 cut(s)	450
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	173, 758
BstDSI	CCRYGG	1 cut(s)	789
BstF5I	GGATG	5 cut(s)	98, 274, 289, 375, 688
BstKTI	GATC	3 cut(s)	31, 130, 756
BstMAI	GTCTC	3 cut(s)	157, 378, 396
BstMBI	GATC	3 cut(s)	28, 127, 753
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 74, 83, 794
BstNI	CCWGG	1 cut(s)	450
BstPAI	GACNNNNGTC	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	2 cut(s)	70, 781
BstV2I	GAAGAC	2 cut(s)	43, 224
BstX2I	RGATCY	2 cut(s)	127, 753
BstYI	RGATCY	2 cut(s)	127, 753
BsuI	GTATCC	2 cut(s)	366, 809
BsuRI	GGCC	3 cut(s)	188, 515, 788
BtgI	CCRYGG	1 cut(s)	789
BtsCI	GGATG	5 cut(s)	98, 274, 289, 375, 688
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	1 cut(s)	477
Cfr13I	GGNCC	2 cut(s)	422, 767
CsiI	ACCWGGT	1 cut(s)	448
CviAII	CATG	2 cut(s)	502, 790
CviJI	RGCY	9 cut(s)	154, 172, 188, 295, 515, 667, 788, 794, 809
CviKI_1	RGCY	9 cut(s)	154, 172, 188, 295, 515, 667, 788, 794, 809
DdeI	CTNAG	2 cut(s)	173, 758
DpnI	GATC	3 cut(s)	30, 129, 755
DpnII	GATC	3 cut(s)	28, 127, 753
DraI	TTTAAA	1 cut(s)	643
DraIII	CACNNNGTG	1 cut(s)	184
EaeI	YGGCCR	2 cut(s)	186, 513
Eco130I	CCWWGG	1 cut(s)	789
Eco31I	GGTCTC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	422, 767
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	2 cut(s)	505, 793
FaiI	YATR	6 cut(s)	298, 503, 580, 654, 679, 791
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	2 cut(s)	501, 789
Fnu4HI	GCNGC	2 cut(s)	84, 795
FokI	GGATG	5 cut(s)	85, 281, 296, 382, 695
Fsp4HI	GCNGC	2 cut(s)	84, 795
FspBI	CTAG	2 cut(s)	26, 527
GluI	GCNGC	2 cut(s)	84, 795
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	3 cut(s)	188, 515, 788
HapII	CCGG	2 cut(s)	671, 824
Hin1II	CATG	2 cut(s)	505, 793
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	4 cut(s)	37, 317, 715, 721
HpaII	CCGG	2 cut(s)	671, 824
Hpy188I	TCNGA	7 cut(s)	20, 36, 322, 720, 745, 753, 845
Hpy188III	TCNNGA	5 cut(s)	131, 527, 595, 671, 824
Hpy99I	CGWCG	2 cut(s)	68, 587
HpyAV	CCTTC	1 cut(s)	592
HpyCH4IV	ACGT	4 cut(s)	311, 324, 331, 573
HpyCH4V	TGCA	6 cut(s)	258, 556, 734, 740, 797, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 74, 83, 794
HpyF3I	CTNAG	2 cut(s)	173, 758
HpySE526I	ACGT	4 cut(s)	311, 324, 331, 573
Hsp92II	CATG	2 cut(s)	505, 793
Kpn2I	TCCGGA	2 cut(s)	670, 823
Kzo9I	GATC	3 cut(s)	28, 127, 753
Lsp1109I	GCAGC	2 cut(s)	70, 781
LweI	GCATC	6 cut(s)	381, 501, 565, 749, 752, 819
MabI	ACCWGGT	1 cut(s)	448
MaeI	CTAG	2 cut(s)	26, 527
MaeII	ACGT	4 cut(s)	311, 324, 331, 573
MaeIII	GTNAC	2 cut(s)	176, 574
MalI	GATC	3 cut(s)	30, 129, 755
MboI	GATC	3 cut(s)	28, 127, 753
MboII	GAAGA	4 cut(s)	43, 224, 614, 640
MflI	RGATCY	2 cut(s)	127, 753
MlsI	TGGCCA	2 cut(s)	188, 515
MluCI	AATT	6 cut(s)	136, 522, 605, 625, 638, 833
MluNI	TGGCCA	2 cut(s)	188, 515
MlyI	GAGTC	2 cut(s)	311, 715
MmeI	TCCRAC	3 cut(s)	307, 379, 673
MnlI	CCTC	5 cut(s)	112, 274, 476, 604, 678
Mox20I	TGGCCA	2 cut(s)	188, 515
MroI	TCCGGA	2 cut(s)	670, 823
MroXI	GAANNNNTTC	1 cut(s)	714
MscI	TGGCCA	2 cut(s)	188, 515
MseI	TTAA	4 cut(s)	159, 291, 348, 642
MslI	CAYNNNNRTG	2 cut(s)	350, 500
Msp20I	TGGCCA	2 cut(s)	188, 515
MspI	CCGG	2 cut(s)	671, 824
MspR9I	CCNGG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	4 cut(s)	65, 74, 83, 794
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	3 cut(s)	28, 127, 753
NlaIII	CATG	2 cut(s)	505, 793
NlaIV	GGNNCC	2 cut(s)	129, 423
NmuCI	GTSAC	2 cut(s)	176, 574
NspV	TTCGAA	1 cut(s)	336
PaqCI	CACCTGC	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 579
PctI	GAATGC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	37, 715
PkrI	GCNGC	2 cut(s)	85, 796
PleI	GAGTC	2 cut(s)	311, 715
PpsI	GAGTC	2 cut(s)	311, 715
PshAI	GACNNNNGTC	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	129, 423
PspPI	GGNCC	2 cut(s)	422, 767
PsuI	RGATCY	2 cut(s)	127, 753
RseI	CAYNNNNRTG	2 cut(s)	350, 500
SaqAI	TTAA	4 cut(s)	159, 291, 348, 642
SatI	GCNGC	2 cut(s)	84, 795
Sau3AI	GATC	3 cut(s)	28, 127, 753
Sau96I	GGNCC	2 cut(s)	422, 767
SchI	GAGTC	2 cut(s)	311, 715
ScrFI	CCNGG	1 cut(s)	450
SexAI	ACCWGGT	1 cut(s)	448
SfaNI	GCATC	6 cut(s)	381, 501, 565, 749, 752, 819
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	2 cut(s)	422, 767
SmiMI	CAYNNNNRTG	2 cut(s)	350, 500
Sse9I	AATT	6 cut(s)	136, 522, 605, 625, 638, 833
SsiI	CCGC	3 cut(s)	359, 765, 773
SspMI	CTAG	2 cut(s)	26, 527
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	1 cut(s)	789
TaiI	ACGT	4 cut(s)	314, 327, 334, 576
TaqI	TCGA	1 cut(s)	336
TasI	AATT	6 cut(s)	136, 522, 605, 625, 638, 833
TfiI	GAWTC	2 cut(s)	37, 715
Tru1I	TTAA	4 cut(s)	159, 291, 348, 642
Tru9I	TTAA	4 cut(s)	159, 291, 348, 642
TseFI	GTSAC	2 cut(s)	176, 574
TseI	GCWGC	2 cut(s)	83, 794
Tsp45I	GTSAC	2 cut(s)	176, 574
TspDTI	ATGAA	1 cut(s)	794
TspGWI	ACGGA	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	422, 767
XapI	RAATTY	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	2 cut(s)	26, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.