Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Reverse (-)

20334727 .. 20339191

Gene Structure 4465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTTGAGGTACAGAGTCACAGAGCAGAAATGCTGAGCATAGCCATGGCTGTGGTCGCCATTGGTGCTGGTACCGTCTTCTATTTCTACGTCACCAGGAAACCAAAAGGTTGCTTGGATCCTGAGAAATTTAAGGAATTCAAACTTGTTAAACGCACTCAGCTCAGCCATAATGTGGCCAAGTTTAAGTTTGTTCTTCCAACACCAACATCAGTATTGGGTCTGCCTATTGGACAGCATATAAGTTGCAGAGGAAAAGATAGTCTTAATGAAGAAGTTGTCAAAGCATATACCCCAACTACTTTGGATACAGATGTTGGATACTTTGAGTTAGTCATAAAGATGTATCCCCAAGGTAGGATGTCTCACCATTTTCGTGTCATGAGTGAAGGTGATTATCTGTCTGTTAAAGGACCTAAGGGTCGATTCAAGTATCAGCCTAACCAAGTTAGAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGGTTGCTAGAGCCATAATGGAAAATCCTAGTGACAAAACGAATGTACATCTCATATATGCCAATGTCACATATGAAGACATTCTATTGAAAGAAGAGCTGGATAATCTTGCGAGTAACTTTCCTAATCGTTTCAACATTTATTATGTTCTGAATCAGGCCCCTGAAGGCTGGGAAGGTGGTGTTGGCTTCATATCAAAAGAAATTATTCAGACTCACTGCCCTGCGCCAGCACCTGATATTAAGATTTTAAGATGCGGGCCACCACCTATGAACAAGGCTATGGCTGCTAACCTGGACAGTCTTGGATACAGTTCGGAAATGCAGTTTCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

279

Amino Acids

31.1

Weight (kDa)

8.74

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	47 - 145	9.7e-32	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	155 - 261	2.9e-30	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	420
Acc65I	GGTACC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	1 cut(s)	756
AclWI	GGATC	2 cut(s)	113, 126
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	128, 137
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	3 cut(s)	12, 73, 546
AfiI	CCNNNNNNNGG	2 cut(s)	175, 357
AgsI	TTSAA	4 cut(s)	142, 430, 589, 634
AjnI	CCWGG	3 cut(s)	95, 498, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	3 cut(s)	163, 455, 598
AluI	AGCT	3 cut(s)	163, 455, 598
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	113, 126
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	3 cut(s)	177, 657, 758
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	2 cut(s)	128, 137
Asp700I	GAANNNNTTC	2 cut(s)	579, 705
Asp718I	GGTACC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	3 cut(s)	413, 658, 758
AsuHPI	GGTGA	3 cut(s)	85, 359, 404
AvaII	GGWCC	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	417
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BalI	TGGCCA	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	71
BbsI	GAAGAC	2 cut(s)	70, 582
BbvI	GCAGC	1 cut(s)	772
BciT130I	CCWGG	3 cut(s)	97, 500, 794
BciVI	GTATCC	4 cut(s)	301, 314, 357, 800
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	507, 528
BfuI	GTATCC	4 cut(s)	301, 314, 357, 800
BisI	GCNGC	1 cut(s)	786
BlpI	GCTNAGC	2 cut(s)	35, 164
BlsI	GCNGC	1 cut(s)	787
Bme1390I	CCNGG	3 cut(s)	97, 500, 794
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	3 cut(s)	413, 658, 758
BmiI	GGNNCC	3 cut(s)	73, 120, 660
BmrFI	CCNGG	3 cut(s)	97, 500, 794
BmsI	GCATC	3 cut(s)	453, 492, 743
BpiI	GAAGAC	2 cut(s)	70, 582
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	2 cut(s)	35, 164
BsaJI	CCNNGG	2 cut(s)	45, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 357
Bse1I	ACTGG	1 cut(s)	484
Bse21I	CCTNAGG	1 cut(s)	417
BseBI	CCWGG	3 cut(s)	97, 500, 794
BseDI	CCNNGG	2 cut(s)	45, 352
BseGI	GGATG	2 cut(s)	366, 468
BseLI	CCNNNNNNNGG	2 cut(s)	175, 357
BseMII	CTCAG	4 cut(s)	26, 114, 173, 178
BseNI	ACTGG	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	772
BseYI	CCCAGC	1 cut(s)	669
BshFI	GGCC	3 cut(s)	179, 659, 760
BshNI	GGYRCC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	175, 357
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	179, 659, 760
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	1 cut(s)	118
Bsp1720I	GCTNAGC	2 cut(s)	35, 164
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	3 cut(s)	179, 659, 760
BspCNI	CTCAG	4 cut(s)	27, 115, 172, 177
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	3 cut(s)	73, 120, 660
BspPI	GGATC	2 cut(s)	113, 126
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	45, 352
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	2 cut(s)	45, 352
Bst2UI	CCWGG	3 cut(s)	97, 500, 794
Bst4CI	ACNGT	3 cut(s)	76, 800, 812
Bst6I	CTCTTC	1 cut(s)	588
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	468, 729, 758
BstDEI	CTNAG	5 cut(s)	35, 123, 159, 164, 417
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	366, 468
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 65, 785
BstNI	CCWGG	3 cut(s)	97, 500, 794
BstSCI	CCNGG	3 cut(s)	95, 498, 792
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	2 cut(s)	70, 582
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	417
BsuI	GTATCC	4 cut(s)	301, 314, 357, 800
BsuRI	GGCC	3 cut(s)	179, 659, 760
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	366, 468
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	2 cut(s)	477, 715
Cac8I	GCNNGC	3 cut(s)	468, 729, 758
CaiI	CAGNNNCTG	1 cut(s)	734
CciI	TCATGA	1 cut(s)	381
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	3 cut(s)	413, 658, 758
Csp6I	GTAC	3 cut(s)	11, 72, 545
CviAII	CATG	2 cut(s)	46, 382
CviQI	GTAC	3 cut(s)	11, 72, 545
DdeI	CTNAG	5 cut(s)	35, 123, 159, 164, 417
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DrdI	GACNNNNNNGTC	1 cut(s)	420
DseDI	GACNNNNNNGTC	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	2 cut(s)	45, 352
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	417
EcoO109I	RGGNCCY	2 cut(s)	413, 658
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	3 cut(s)	95, 498, 792
EcoT14I	CCWWGG	2 cut(s)	45, 352
ErhI	CCWWGG	2 cut(s)	45, 352
FaeI	CATG	2 cut(s)	49, 385
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	2 cut(s)	45, 381
FauI	CCCGC	1 cut(s)	749
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	2 cut(s)	373, 475
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	2 cut(s)	507, 528
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	1 cut(s)	786
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	179, 659, 760
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	2 cut(s)	49, 385
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HinfI	GANTC	4 cut(s)	16, 426, 652, 712
HphI	GGTGA	3 cut(s)	85, 359, 404
Hpy188I	TCNGA	3 cut(s)	651, 711, 817
Hpy188III	TCNNGA	2 cut(s)	122, 382
HpyAV	CCTTC	3 cut(s)	383, 659, 668
HpyCH4III	ACNGT	3 cut(s)	76, 800, 812
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	249, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 65, 785
HpyF3I	CTNAG	5 cut(s)	35, 123, 159, 164, 417
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	49, 385
HspAI	GCGC	1 cut(s)	725
KpnI	GGTACC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	588
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	3 cut(s)	453, 492, 743
MaeI	CTAG	2 cut(s)	507, 528
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	5 cut(s)	17, 91, 530, 565, 614
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	5 cut(s)	70, 188, 284, 587, 605
MflI	RGATCY	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	3 cut(s)	128, 137, 702
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	2 cut(s)	25, 706
MmeI	TCCRAC	2 cut(s)	224, 298
MnlI	CCTC	2 cut(s)	245, 467
Mox20I	TGGCCA	1 cut(s)	179
MroXI	GAANNNNTTC	2 cut(s)	579, 705
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	8 cut(s)	132, 150, 186, 267, 408, 741, 749, 835
MslI	CAYNNNNRTG	5 cut(s)	44, 50, 341, 375, 491
Msp20I	TGGCCA	1 cut(s)	179
MspR9I	CCNGG	3 cut(s)	97, 500, 794
MvaI	CCWGG	3 cut(s)	97, 500, 794
MwoI	GCNNNNNNNGC	3 cut(s)	56, 65, 785
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	49, 385
NlaIV	GGNNCC	3 cut(s)	73, 120, 660
NmuCI	GTSAC	4 cut(s)	17, 91, 530, 565
PagI	TCATGA	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	588
PdmI	GAANNNNTTC	2 cut(s)	579, 705
PfeI	GAWTC	2 cut(s)	426, 652
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	2 cut(s)	24, 706
PpsI	GAGTC	2 cut(s)	24, 706
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	95, 498, 792
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	3 cut(s)	95, 498, 792
PspN4I	GGNNCC	3 cut(s)	73, 120, 660
PspPI	GGNCC	3 cut(s)	413, 658, 758
PspPPI	RGGWCCY	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	734
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	3 cut(s)	12, 73, 546
RsaNI	GTAC	3 cut(s)	11, 72, 545
RseI	CAYNNNNRTG	5 cut(s)	44, 50, 341, 375, 491
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	8 cut(s)	132, 150, 186, 267, 408, 741, 749, 835
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	3 cut(s)	413, 658, 758
SchI	GAGTC	2 cut(s)	25, 706
ScrFI	CCNGG	3 cut(s)	97, 500, 794
SfaNI	GCATC	3 cut(s)	453, 492, 743
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	5 cut(s)	44, 50, 341, 375, 491
Sse9I	AATT	3 cut(s)	128, 137, 702
SsiI	CCGC	1 cut(s)	756
SspMI	CTAG	2 cut(s)	507, 528
StyD4I	CCNGG	3 cut(s)	95, 498, 792
StyI	CCWWGG	2 cut(s)	45, 352
TaaI	ACNGT	3 cut(s)	76, 800, 812
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	424
TasI	AATT	3 cut(s)	128, 137, 702
TatI	WGTACW	1 cut(s)	544
TfiI	GAWTC	2 cut(s)	426, 652
Tru1I	TTAA	8 cut(s)	132, 150, 186, 267, 408, 741, 749, 835
Tru9I	TTAA	8 cut(s)	132, 150, 186, 267, 408, 741, 749, 835
TscAI	CASTG	2 cut(s)	484, 722
TseFI	GTSAC	4 cut(s)	17, 91, 530, 565
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	4 cut(s)	17, 91, 530, 565
TspDTI	ATGAA	4 cut(s)	285, 588, 679, 785
TspRI	CASTG	2 cut(s)	484, 722
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	128, 137
XmnI	GAANNNNTTC	2 cut(s)	579, 705
XspI	CTAG	2 cut(s)	507, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.