Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Forward (+)

1411783 .. 1415727

Gene Structure 3945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1013300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATTTCTTAGAGTCACTGGATCCCCAGATCCTTGTGGGTGCGGCTGTGGCTGTTGTTGTTATTGCGGCTGCTGCTTATCTCTTCTCCTCCAAGAAGCCCAAAGTTTGCTTAGATCCGGAGAATTTCAAGGACTTCAAACTTGTCAAGCGCACACAGCTGAGCCACAATGTGGCAAAGTTTAAATTTGAACTTCCAACACCTACTGCAGTTTTAGGCCTTCCAATTGGACAGCACATAAGTTGCAGGGGCAAGGATGGGCAAGGAGAAGAGATTATCAAACCATATACCCCAACTACCTTGGATTCTGATGTTGGATATTTTGAATTGGTTATAAAGATGTATCCTCAAGGAAGAATGTCACATCATTTCCGGGAGATGCGCGTTGGAGATCATCTTGCTGTCAAGGGACCGAAGGGGCGTTTCAAGTATCAACCTGGCCAAGTTAGAGCATTTGGGATGCTTGCTGGAGGGTCTGGAATCACTCCAATGTTCCAGGTTGCAAGGGCAATATTAGAAAACCCAAAAGACAAAACGAAGGTGCACTTGATCTATGCCAATGTGACATATGAAGACATTCTTGTAAAGGAAGAGTTGGATGGCCTTGCTAGTAACTACCCTGATCGCTTCAATATTTACTACGTCTTGAATCAGCCTCCGGAAGTATGGGATGGTGGTGTTGGCTTTGTCTCAAAGGAAATGATTCAAGAGCACTTGCCTGCCCCAGCGCATGATATTCAGATTCTGAGATGTGGTCCACCCCCGATGAACAAGGCCATGGCTGCTCACCTTGAAGCACTCGGATATGCACCGGAGATGCAGTTCCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

278

Amino Acids

30.84

Weight (kDa)

7.12

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	46 - 144	1.4e-34	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	154 - 260	7.3e-31	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccII	CGCG	1 cut(s)	384
AccIII	TCCGGA	2 cut(s)	118, 658
AciI	CCGC	2 cut(s)	44, 68
AclWI	GGATC	4 cut(s)	17, 25, 30, 110
AcoI	YGGCCR	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	124, 185
AdeI	CACNNNGTG	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	9 cut(s)	130, 139, 191, 326, 427, 631, 649, 707, 794
AjnI	CCWGG	2 cut(s)	436, 495
AloI	GAACNNNNNNTCC	1 cut(s)	806
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	2 cut(s)	546, 714
Alw26I	GTCTC	1 cut(s)	694
Alw44I	GTGCAC	1 cut(s)	542
AlwI	GGATC	4 cut(s)	17, 25, 30, 110
AlwNI	CAGNNNCTG	1 cut(s)	745
Aor13HI	TCCGGA	2 cut(s)	118, 658
AoxI	GGCC	4 cut(s)	217, 439, 601, 774
ApaLI	GTGCAC	1 cut(s)	542
ApeKI	GCWGC	3 cut(s)	71, 74, 782
ApoI	RAATTY	2 cut(s)	124, 185
Asp700I	GAANNNNTTC	2 cut(s)	576, 702
AspLEI	GCGC	3 cut(s)	153, 384, 730
AspS9I	GGNCC	2 cut(s)	410, 755
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	779
AvaII	GGWCC	2 cut(s)	410, 755
BaeGI	GKGCMC	1 cut(s)	546
BalI	TGGCCA	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	2 cut(s)	546, 714
BbvI	GCAGC	3 cut(s)	58, 61, 769
BccI	CCATC	3 cut(s)	251, 593, 665
BciT130I	CCWGG	2 cut(s)	438, 497
BciVI	GTATCC	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	694
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	354
BisI	GCNGC	5 cut(s)	45, 69, 72, 75, 783
BlpI	GCTNAGC	1 cut(s)	161
BlsI	GCNGC	5 cut(s)	46, 70, 73, 76, 784
Bme1390I	CCNGG	3 cut(s)	374, 438, 497
Bme18I	GGWCC	2 cut(s)	410, 755
BmgT120I	GGNCC	2 cut(s)	410, 755
BmiI	GGNNCC	2 cut(s)	24, 411
BmrFI	CCNGG	3 cut(s)	374, 438, 497
BmsI	GCATC	3 cut(s)	369, 450, 807
BpiI	GAAGAC	1 cut(s)	579
BpmI	CTGGAG	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	300, 777
BsaWI	WCCGGW	3 cut(s)	118, 658, 811
BsaXI	ACNNNNNCTCC	1 cut(s)	806
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	24, 826
BseAI	TCCGGA	2 cut(s)	118, 658
BseBI	CCWGG	2 cut(s)	438, 497
BseDI	CCNNGG	2 cut(s)	300, 777
BseGI	GGATG	4 cut(s)	262, 465, 604, 676
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	152, 737
BseNI	ACTGG	2 cut(s)	24, 826
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	3 cut(s)	58, 61, 769
BseYI	CCCAGC	1 cut(s)	724
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	4 cut(s)	219, 441, 603, 776
BsiHKAI	GWGCWC	2 cut(s)	546, 714
BsiSI	CCGG	4 cut(s)	119, 373, 659, 812
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	694
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	4 cut(s)	219, 441, 603, 776
Bsp1286I	GDGCHC	2 cut(s)	546, 714
Bsp13I	TCCGGA	2 cut(s)	118, 658
Bsp143I	GATC	6 cut(s)	22, 30, 115, 391, 549, 622
Bsp1720I	GCTNAGC	1 cut(s)	161
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	2 cut(s)	44, 68
BspANI	GGCC	4 cut(s)	219, 441, 603, 776
BspCNI	CTCAG	2 cut(s)	153, 738
BspEI	TCCGGA	2 cut(s)	118, 658
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	24, 411
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	4 cut(s)	17, 25, 30, 110
BsrI	ACTGG	2 cut(s)	24, 826
BssECI	CCNNGG	2 cut(s)	300, 777
BssMI	GATC	6 cut(s)	22, 30, 115, 391, 549, 622
BssT1I	CCWWGG	2 cut(s)	300, 777
Bst2UI	CCWGG	2 cut(s)	438, 497
Bst6I	CTCTTC	3 cut(s)	89, 264, 585
BstC8I	GCNNGC	2 cut(s)	465, 720
BstDEI	CTNAG	4 cut(s)	10, 112, 161, 746
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	4 cut(s)	262, 465, 604, 676
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	3 cut(s)	153, 384, 730
BstKTI	GATC	6 cut(s)	25, 33, 118, 394, 552, 625
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	6 cut(s)	22, 30, 115, 391, 549, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 74, 157, 782
BstNI	CCWGG	2 cut(s)	438, 497
BstSCI	CCNGG	3 cut(s)	372, 436, 495
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	546
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	3 cut(s)	58, 61, 769
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	3 cut(s)	22, 30, 115
BstYI	RGATCY	3 cut(s)	22, 30, 115
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	4 cut(s)	219, 441, 603, 776
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	4 cut(s)	262, 465, 604, 676
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	465, 720
CaiI	CAGNNNCTG	1 cut(s)	745
CfoI	GCGC	3 cut(s)	153, 384, 730
Cfr13I	GGNCC	2 cut(s)	410, 755
CviAII	CATG	2 cut(s)	731, 778
DdeI	CTNAG	4 cut(s)	10, 112, 161, 746
DpnI	GATC	6 cut(s)	24, 32, 117, 393, 551, 624
DpnII	GATC	6 cut(s)	22, 30, 115, 391, 549, 622
DraI	TTTAAA	1 cut(s)	184
DraIII	CACNNNGTG	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	439
Eam1104I	CTCTTC	3 cut(s)	89, 264, 585
EarI	CTCTTC	3 cut(s)	89, 264, 585
Eco130I	CCWWGG	2 cut(s)	300, 777
Eco147I	AGGCCT	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	410, 755
EcoRII	CCWGG	2 cut(s)	436, 495
EcoT14I	CCWWGG	2 cut(s)	300, 777
ErhI	CCWWGG	2 cut(s)	300, 777
FaeI	CATG	2 cut(s)	734, 781
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 564, 596
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	2 cut(s)	730, 777
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	5 cut(s)	45, 69, 72, 75, 783
FokI	GGATG	4 cut(s)	269, 472, 611, 683
Fsp4HI	GCNGC	5 cut(s)	45, 69, 72, 75, 783
FspBI	CTAG	1 cut(s)	609
GlaI	GCGC	3 cut(s)	152, 383, 729
GluI	GCNGC	5 cut(s)	45, 69, 72, 75, 783
GsaI	CCCAGC	1 cut(s)	728
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	4 cut(s)	219, 441, 603, 776
HapII	CCGG	4 cut(s)	119, 373, 659, 812
HhaI	GCGC	3 cut(s)	153, 384, 730
Hin1II	CATG	2 cut(s)	734, 781
Hin6I	GCGC	3 cut(s)	151, 382, 728
HinP1I	GCGC	3 cut(s)	151, 382, 728
HinfI	GANTC	6 cut(s)	14, 305, 480, 649, 703, 742
HpaII	CCGG	4 cut(s)	119, 373, 659, 812
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	2 cut(s)	544, 758
Hpy188I	TCNGA	5 cut(s)	310, 741, 747, 803, 833
Hpy188III	TCNNGA	5 cut(s)	119, 477, 646, 659, 707
Hpy8I	GTNNAC	2 cut(s)	544, 758
HpyAV	CCTTC	3 cut(s)	230, 409, 532
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	6 cut(s)	209, 246, 503, 544, 809, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 74, 157, 782
HpyF3I	CTNAG	4 cut(s)	10, 112, 161, 746
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	2 cut(s)	734, 781
HspAI	GCGC	3 cut(s)	151, 382, 728
Kpn2I	TCCGGA	2 cut(s)	118, 658
Kzo9I	GATC	6 cut(s)	22, 30, 115, 391, 549, 622
Lsp1109I	GCAGC	3 cut(s)	58, 61, 769
LweI	GCATC	3 cut(s)	369, 450, 807
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	4 cut(s)	15, 360, 562, 611
MalI	GATC	6 cut(s)	24, 32, 117, 393, 551, 624
MboI	GATC	6 cut(s)	22, 30, 115, 391, 549, 622
MboII	GAAGA	5 cut(s)	76, 281, 366, 584, 602
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	3 cut(s)	22, 30, 115
MhlI	GDGCHC	2 cut(s)	546, 714
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	4 cut(s)	124, 185, 225, 326
MluNI	TGGCCA	1 cut(s)	441
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	4 cut(s)	221, 295, 367, 576
MnlI	CCTC	4 cut(s)	100, 357, 464, 666
Mox20I	TGGCCA	1 cut(s)	441
MroI	TCCGGA	2 cut(s)	118, 658
MroXI	GAANNNNTTC	2 cut(s)	576, 702
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	4 cut(s)	119, 373, 659, 812
MspR9I	CCNGG	3 cut(s)	374, 438, 497
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	2 cut(s)	438, 497
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	4 cut(s)	50, 74, 157, 782
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	777
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	6 cut(s)	22, 30, 115, 391, 549, 622
NlaIII	CATG	2 cut(s)	734, 781
NlaIV	GGNNCC	2 cut(s)	24, 411
NmuCI	GTSAC	3 cut(s)	15, 360, 562
PceI	AGGCCT	1 cut(s)	219
PdmI	GAANNNNTTC	2 cut(s)	576, 702
PfeI	GAWTC	5 cut(s)	305, 480, 649, 703, 742
PflMI	CCANNNNNTGG	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	372
PkrI	GCNGC	5 cut(s)	46, 70, 73, 76, 784
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PsiI	TTATAA	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	436, 495
PspFI	CCCAGC	1 cut(s)	724
PspGI	CCWGG	2 cut(s)	436, 495
PspN4I	GGNNCC	2 cut(s)	24, 411
PspPI	GGNCC	2 cut(s)	410, 755
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	745
PsuI	RGATCY	3 cut(s)	22, 30, 115
PvuII	CAGCTG	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	5 cut(s)	45, 69, 72, 75, 783
Sau3AI	GATC	6 cut(s)	22, 30, 115, 391, 549, 622
Sau96I	GGNCC	2 cut(s)	410, 755
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	3 cut(s)	374, 438, 497
SduI	GDGCHC	2 cut(s)	546, 714
SetI	ASST	8 cut(s)	162, 205, 302, 439, 501, 543, 645, 792
SfaNI	GCATC	3 cut(s)	369, 450, 807
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	410, 755
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	4 cut(s)	124, 185, 225, 326
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	2 cut(s)	44, 68
SspI	AATATT	2 cut(s)	513, 634
SspMI	CTAG	1 cut(s)	609
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	3 cut(s)	372, 436, 495
StyI	CCWWGG	2 cut(s)	300, 777
TaiI	ACGT	1 cut(s)	645
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	4 cut(s)	124, 185, 225, 326
TauI	GCSGC	2 cut(s)	47, 71
TfiI	GAWTC	5 cut(s)	305, 480, 649, 703, 742
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	3 cut(s)	15, 360, 562
TseI	GCWGC	3 cut(s)	71, 74, 782
Tsp45I	GTSAC	3 cut(s)	15, 360, 562
TspDTI	ATGAA	2 cut(s)	585, 782
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	410, 755
XapI	RAATTY	2 cut(s)	124, 185
XmnI	GAANNNNTTC	2 cut(s)	576, 702
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.