Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Forward (+)

16474979 .. 16480455

Gene Structure 5477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15660.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAATTGTTGCAGAGGCACAGAGCAGAAATGGTAAGCATCGCAATGGCTGTGGTGGCCATTGGTGTTGGTACGGCCTACTATTTCTACATCACCAACAAAACAAAACAGAAAGGTTGCTTGGATCCTGACAAATTCAAGGAATTTAAACTTGTTAAACGCACTCAGCTCAGCCATAATGTCGCTAAATTTAAATTTGCTCTTCCAACTCCATCAGCAGTGTTGGGACTCCCTATTGGACAGCATATGAGTTGCAGAGGAAAAGACAGCCTTAATGAAGACGTCGTCAAACCATATACCCCAACAACTTTGGATTCAGATGTTGGATACTTTGAATTAGTCATAAAGATGTATCCACAAGGAAGGATGTCTCACCACTTCCAAATGATGCGCGAAGGTGATTATCTAGCTGTGAAAGGACCTAAGGGACGATTCAAGTATCAACCTAACCAAGTTAGAGCTTTTGGGATGCTAGCTGGAGGCACTGGCATCACTCCGATGTTCCAGGTTGCTAGAGCCATATTGGAAAATCCCAGTGACAGAACAAATGTACATCTTATATATGCCAACGTCACATATGAGGACATCCTATTGAAAGAAGAGCTGGACAATCTTTCCAGTAACTTTCCCAATCGTTTCAACATTTATTATGTTTTGAATCAGCCCCCTGAACAATGGGAAGGTGGTGTTGGATTCATATCAAAAGAAATTATTCAATCTTACTGCCCGGCGCCAGCACCGGATATTAAGATTTTGCGATGCGGACCACCACCGATGAACAAGGCTATGGCTGCTAACCTCGCGAGTCTGGGATACAGCCCCGAAATGCAGTTCCAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

281

Amino Acids

31.53

Weight (kDa)

9.0

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	730
AccII	CGCG	2 cut(s)	393, 803
AciI	CCGC	1 cut(s)	762
AclWI	GGATC	2 cut(s)	119, 132
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	4 cut(s)	134, 143, 188, 194
AcyI	GRCGYC	2 cut(s)	282, 731
AfaI	GTAC	2 cut(s)	73, 552
AgsI	TTSAA	7 cut(s)	139, 335, 436, 595, 640, 658, 716
AjnI	CCWGG	1 cut(s)	504
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 672, 704
AluBI	AGCT	5 cut(s)	169, 410, 461, 476, 604
AluI	AGCT	5 cut(s)	169, 410, 461, 476, 604
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	119, 132
AoxI	GGCC	2 cut(s)	57, 75
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	4 cut(s)	134, 143, 188, 194
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	2 cut(s)	393, 733
AspS9I	GGNCC	2 cut(s)	419, 764
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	3 cut(s)	85, 365, 410
AsuNHI	GCTAGC	1 cut(s)	472
AvaII	GGWCC	2 cut(s)	419, 764
AxyI	CCTNAGG	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	778
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	506
BciVI	GTATCC	3 cut(s)	320, 363, 806
BcnI	CCSGG	1 cut(s)	728
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	3 cut(s)	407, 473, 513
BfoI	RGCGCY	1 cut(s)	734
BfuI	GTATCC	3 cut(s)	320, 363, 806
BisI	GCNGC	1 cut(s)	792
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	793
Bme1390I	CCNGG	2 cut(s)	506, 728
Bme18I	GGWCC	2 cut(s)	419, 764
BmgT120I	GGNCC	2 cut(s)	419, 764
BmiI	GGNNCC	2 cut(s)	126, 732
BmrFI	CCNGG	2 cut(s)	506, 728
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	5 cut(s)	48, 378, 459, 498, 749
BmtI	GCTAGC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	498
Bpu1102I	GCTNAGC	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	697
BsaHI	GRCGYC	2 cut(s)	282, 731
BsaWI	WCCGGW	1 cut(s)	739
Bse1I	ACTGG	4 cut(s)	490, 534, 618, 835
Bse21I	CCTNAGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	506
BseGI	GGATG	3 cut(s)	372, 474, 585
BseJI	GATNNNNATC	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	179, 184
BseNI	ACTGG	4 cut(s)	490, 534, 618, 835
BseXI	GCAGC	1 cut(s)	778
Bsh1236I	CGCG	2 cut(s)	393, 803
BshFI	GGCC	2 cut(s)	59, 77
BshNI	GGYRCC	1 cut(s)	730
BsiSI	CCGG	2 cut(s)	728, 740
BslFI	GGGAC	2 cut(s)	240, 441
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	2 cut(s)	240, 441
BsnI	GGCC	2 cut(s)	59, 77
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	1 cut(s)	124
Bsp1720I	GCTNAGC	1 cut(s)	170
Bsp68I	TCGCGA	1 cut(s)	803
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	2 cut(s)	59, 77
BspCNI	CTCAG	2 cut(s)	178, 183
BspFNI	CGCG	2 cut(s)	393, 803
BspLI	GGNNCC	2 cut(s)	126, 732
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	119, 132
BspQI	GCTCTTC	2 cut(s)	207, 594
BspT107I	GGYRCC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	4 cut(s)	490, 534, 618, 835
BssMI	GATC	1 cut(s)	124
BssNI	GRCGYC	2 cut(s)	282, 731
Bst2UI	CCWGG	1 cut(s)	506
Bst6I	CTCTTC	2 cut(s)	207, 594
BstACI	GRCGYC	2 cut(s)	282, 731
BstAUI	TGTACA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	474, 735
BstDEI	CTNAG	3 cut(s)	165, 170, 423
BstF5I	GGATG	3 cut(s)	372, 474, 585
BstFNI	CGCG	2 cut(s)	393, 803
BstH2I	RGCGCY	1 cut(s)	734
BstHHI	GCGC	2 cut(s)	393, 733
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 791, 800
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	504, 726
BstUI	CGCG	2 cut(s)	393, 803
BstV1I	GCAGC	1 cut(s)	778
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Bsu36I	CCTNAGG	1 cut(s)	423
BsuI	GTATCC	3 cut(s)	320, 363, 806
BsuRI	GGCC	2 cut(s)	59, 77
BtgZI	GCGATG	2 cut(s)	25, 772
BtsCI	GGATG	3 cut(s)	372, 474, 585
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	225, 483, 541
BtuMI	TCGCGA	1 cut(s)	803
Cac8I	GCNNGC	2 cut(s)	474, 735
CfoI	GCGC	2 cut(s)	393, 733
Cfr13I	GGNCC	2 cut(s)	419, 764
Csp6I	GTAC	2 cut(s)	72, 551
CspCI	CAANNNNNGTGG	2 cut(s)	33, 68
CviQI	GTAC	2 cut(s)	72, 551
DdeI	CTNAG	3 cut(s)	165, 170, 423
DinI	GGCGCC	1 cut(s)	732
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraI	TTTAAA	2 cut(s)	148, 193
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	207, 594
EarI	CTCTTC	2 cut(s)	207, 594
Eco47I	GGWCC	2 cut(s)	419, 764
Eco81I	CCTNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	504
EgeI	GGCGCC	1 cut(s)	732
EheI	GGCGCC	1 cut(s)	732
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	2 cut(s)	240, 441
FauNDI	CATATG	2 cut(s)	246, 577
Fnu4HI	GCNGC	1 cut(s)	792
FokI	GGATG	3 cut(s)	379, 481, 572
Fsp4HI	GCNGC	1 cut(s)	792
FspBI	CTAG	3 cut(s)	407, 473, 513
GlaI	GCGC	2 cut(s)	392, 732
GluI	GCNGC	1 cut(s)	792
GsuI	CTGGAG	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	734
HaeIII	GGCC	2 cut(s)	59, 77
HapII	CCGG	2 cut(s)	728, 740
HhaI	GCGC	2 cut(s)	393, 733
Hin1I	GRCGYC	2 cut(s)	282, 731
Hin6I	GCGC	2 cut(s)	391, 731
HinP1I	GCGC	2 cut(s)	391, 731
HinfI	GANTC	6 cut(s)	228, 314, 432, 658, 693, 805
HpaII	CCGG	2 cut(s)	728, 740
HphI	GGTGA	3 cut(s)	85, 365, 410
Hpy188I	TCNGA	2 cut(s)	319, 498
Hpy188III	TCNNGA	2 cut(s)	128, 802
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	357, 389, 674
HpyCH4IV	ACGT	2 cut(s)	282, 570
HpyCH4V	TGCA	3 cut(s)	13, 255, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 791, 800
HpyF3I	CTNAG	3 cut(s)	165, 170, 423
HpySE526I	ACGT	2 cut(s)	282, 570
Hsp92I	GRCGYC	2 cut(s)	282, 731
HspAI	GCGC	2 cut(s)	391, 731
KasI	GGCGCC	1 cut(s)	730
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	2 cut(s)	207, 594
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	5 cut(s)	48, 378, 459, 498, 749
MaeI	CTAG	3 cut(s)	407, 473, 513
MaeII	ACGT	2 cut(s)	282, 570
MaeIII	GTNAC	3 cut(s)	536, 571, 620
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	194, 290, 611
MflI	RGATCY	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	7 cut(s)	5, 134, 143, 188, 194, 335, 708
MluNI	TGGCCA	1 cut(s)	59
Mly113I	GGCGCC	1 cut(s)	731
MlyI	GAGTC	2 cut(s)	222, 814
MmeI	TCCRAC	3 cut(s)	230, 304, 670
MnlI	CCTC	5 cut(s)	9, 251, 473, 574, 809
Mox20I	TGGCCA	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	711
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	5 cut(s)	147, 156, 192, 273, 747
MslI	CAYNNNNRTG	3 cut(s)	44, 347, 497
Msp20I	TGGCCA	1 cut(s)	59
MspI	CCGG	2 cut(s)	728, 740
MspR9I	CCNGG	2 cut(s)	506, 728
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	2 cut(s)	393, 803
MwoI	GCNNNNNNNGC	3 cut(s)	56, 791, 800
NarI	GGCGCC	1 cut(s)	731
NciI	CCSGG	1 cut(s)	728
NdeI	CATATG	2 cut(s)	246, 577
NdeII	GATC	1 cut(s)	124
NheI	GCTAGC	1 cut(s)	472
NlaIV	GGNNCC	2 cut(s)	126, 732
NmuCI	GTSAC	2 cut(s)	536, 571
NruI	TCGCGA	1 cut(s)	803
PciSI	GCTCTTC	2 cut(s)	207, 594
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	4 cut(s)	314, 432, 658, 693
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	793
PleI	GAGTC	2 cut(s)	222, 813
PluTI	GGCGCC	1 cut(s)	734
PpsI	GAGTC	2 cut(s)	222, 813
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	126, 732
PspPI	GGNCC	2 cut(s)	419, 764
PspPPI	RGGWCCY	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	284
RruI	TCGCGA	1 cut(s)	803
RsaI	GTAC	2 cut(s)	73, 552
RsaNI	GTAC	2 cut(s)	72, 551
RseI	CAYNNNNRTG	3 cut(s)	44, 347, 497
SapI	GCTCTTC	2 cut(s)	207, 594
SaqAI	TTAA	5 cut(s)	147, 156, 192, 273, 747
SatI	GCNGC	1 cut(s)	792
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	2 cut(s)	419, 764
SchI	GAGTC	2 cut(s)	222, 814
ScrFI	CCNGG	2 cut(s)	506, 728
SfaNI	GCATC	5 cut(s)	48, 378, 459, 498, 749
SfoI	GGCGCC	1 cut(s)	732
SinI	GGWCC	2 cut(s)	419, 764
SmiI	ATTTAAAT	1 cut(s)	193
SmiMI	CAYNNNNRTG	3 cut(s)	44, 347, 497
Sse9I	AATT	7 cut(s)	5, 134, 143, 188, 194, 335, 708
SsiI	CCGC	1 cut(s)	762
SspDI	GGCGCC	1 cut(s)	730
SspMI	CTAG	3 cut(s)	407, 473, 513
StyD4I	CCNGG	2 cut(s)	504, 726
SwaI	ATTTAAAT	1 cut(s)	193
TaiI	ACGT	2 cut(s)	285, 573
TasI	AATT	7 cut(s)	5, 134, 143, 188, 194, 335, 708
TatI	WGTACW	1 cut(s)	550
TfiI	GAWTC	4 cut(s)	314, 432, 658, 693
Tru1I	TTAA	5 cut(s)	147, 156, 192, 273, 747
Tru9I	TTAA	5 cut(s)	147, 156, 192, 273, 747
TscAI	CASTG	3 cut(s)	225, 490, 541
TseFI	GTSAC	2 cut(s)	536, 571
TseI	GCWGC	1 cut(s)	791
Tsp45I	GTSAC	2 cut(s)	536, 571
TspDTI	ATGAA	3 cut(s)	291, 685, 791
TspRI	CASTG	3 cut(s)	225, 490, 541
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	419, 764
XapI	RAATTY	4 cut(s)	134, 143, 188, 194
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	3 cut(s)	407, 473, 513
ZraI	GACGTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.