Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Forward (+)

47982582 .. 47989222

Gene Structure 6641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32749

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTGTGTTACAGAGTCACAGAGCAGAAATGCTGAGCATAGCCGTGGCCGTAGTCGCCATTGGTGTTGGTACGGCCTACTATTTCTACGTCACCAGGAAACCAAAAGGTTGCTTGGATCCTGAGAAATTCAAGGAATTCAAACTTGTTAAACGCACTCAGCTCAGCCATAATGTGGCTAAGTTTAAGTTTTCTCTTCCAACAGCAACATCAGTGTTCGGTCTGCCTATTGGACAGCATATAAGTTGCAGAGGAAAAGATAGTCTTAATGAAGAAGTTATCAAAGCATATACCCCAACCACTTTGGATACAGATGTTGGATACTTTGAATTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCTCACCATTTTCGAGTCATGAGTGAAGGTGATTATCTCGCTGTAAAAGGACCTAAGGGTCGATTCAAGTATCAGCCTAACCAAGTTAGAGCTTTTGGGATGCTAGCTGGAGGCACTGGCATCACTCCAATGTTCCAGGTTGCTAGAGCCATAATGGAAAATCCCAGTGACAGAACGAATGTACATCTCATATATGGCAATGTCACATATGATGACATTCTATTGAAAGAAGAGCTAGATAATCTGGCCATTAACTTTCCCAATCGTTTCAACATTTATTATGTTTTAAATCAGCCCCTGAAGGCTGGGAAGGTGGTGTTGGGTTCATATCAAAAGAAATTATTCAGACTCACTGCCCTGCACCAGCACCCGATATTAAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

249

Amino Acids

28.17

Weight (kDa)

9.68

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	47 - 145	2e-31	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	155 - 228	2.4e-18	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	420
AccB7I	CCANNNNNTGG	1 cut(s)	175
AclWI	GGATC	2 cut(s)	113, 126
AcoI	YGGCCR	2 cut(s)	48, 609
AcsI	RAATTY	2 cut(s)	128, 137
AcuI	CTGAAG	1 cut(s)	683
AfaI	GTAC	2 cut(s)	73, 546
AfiI	CCNNNNNNNGG	2 cut(s)	175, 357
AgsI	TTSAA	6 cut(s)	133, 142, 329, 430, 589, 634
AjnI	CCWGG	2 cut(s)	95, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AluBI	AGCT	4 cut(s)	163, 455, 470, 598
AluI	AGCT	4 cut(s)	163, 455, 470, 598
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	113, 126
AlwNI	CAGNNNCTG	1 cut(s)	661
AoxI	GGCC	3 cut(s)	48, 75, 609
ApoI	RAATTY	2 cut(s)	128, 137
Asp700I	GAANNNNTTC	1 cut(s)	704
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	3 cut(s)	85, 359, 404
AsuNHI	GCTAGC	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	417
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BalI	TGGCCA	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	118
BceAI	ACGGC	3 cut(s)	29, 35, 90
BciT130I	CCWGG	2 cut(s)	97, 500
BciVI	GTATCC	3 cut(s)	301, 314, 357
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	3 cut(s)	467, 507, 599
BfuI	GTATCC	3 cut(s)	301, 314, 357
BlpI	GCTNAGC	2 cut(s)	35, 164
Bme1390I	CCNGG	2 cut(s)	97, 500
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	97, 500
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	2 cut(s)	453, 492
BmtI	GCTAGC	1 cut(s)	470
BmuI	ACTGGG	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	2 cut(s)	35, 164
BsaJI	CCNNGG	2 cut(s)	45, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 357
Bse1I	ACTGG	2 cut(s)	484, 528
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	97, 500
BseDI	CCNNGG	2 cut(s)	45, 352
BseGI	GGATG	2 cut(s)	366, 468
BseLI	CCNNNNNNNGG	2 cut(s)	175, 357
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	4 cut(s)	26, 114, 173, 178
BseNI	ACTGG	2 cut(s)	484, 528
BseYI	CCCAGC	1 cut(s)	668
BsgI	GTGCAG	1 cut(s)	707
BshFI	GGCC	3 cut(s)	50, 77, 611
BslI	CCNNNNNNNGG	2 cut(s)	175, 357
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	50, 77, 611
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	1 cut(s)	118
Bsp1720I	GCTNAGC	2 cut(s)	35, 164
BspANI	GGCC	3 cut(s)	50, 77, 611
BspCNI	CTCAG	4 cut(s)	27, 115, 172, 177
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	120
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	2 cut(s)	113, 126
BspQI	GCTCTTC	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	568
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	484, 528
BssECI	CCNNGG	2 cut(s)	45, 352
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	2 cut(s)	97, 500
Bst6I	CTCTTC	2 cut(s)	201, 588
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	6 cut(s)	35, 123, 159, 164, 180, 417
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	366, 468
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	97, 500
BstSCI	CCNGG	2 cut(s)	95, 498
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	417
BsuI	GTATCC	3 cut(s)	301, 314, 357
BsuRI	GGCC	3 cut(s)	50, 77, 611
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	366, 468
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	4 cut(s)	219, 477, 535, 714
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	661
CciI	TCATGA	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	72, 545
CviAII	CATG	1 cut(s)	382
CviQI	GTAC	2 cut(s)	72, 545
DdeI	CTNAG	6 cut(s)	35, 123, 159, 164, 180, 417
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DraI	TTTAAA	1 cut(s)	651
DrdI	GACNNNNNNGTC	1 cut(s)	420
DseDI	GACNNNNNNGTC	1 cut(s)	420
EaeI	YGGCCR	2 cut(s)	48, 609
Eam1104I	CTCTTC	2 cut(s)	201, 588
EarI	CTCTTC	2 cut(s)	201, 588
Eco130I	CCWWGG	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	683
Eco81I	CCTNAGG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	95, 498
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	385
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	1 cut(s)	381
FauNDI	CATATG	1 cut(s)	571
FokI	GGATG	2 cut(s)	373, 475
FspBI	CTAG	3 cut(s)	467, 507, 599
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	50, 77, 611
Hin1II	CATG	1 cut(s)	385
HinfI	GANTC	4 cut(s)	16, 378, 426, 711
HphI	GGTGA	3 cut(s)	85, 359, 404
Hpy188I	TCNGA	1 cut(s)	710
Hpy188III	TCNNGA	2 cut(s)	122, 382
HpyAV	CCTTC	4 cut(s)	351, 383, 658, 667
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	249, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	6 cut(s)	35, 123, 159, 164, 180, 417
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	588
LweI	GCATC	2 cut(s)	453, 492
MaeI	CTAG	3 cut(s)	467, 507, 599
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	5 cut(s)	9, 17, 91, 530, 565
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	188, 284, 605
MflI	RGATCY	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	4 cut(s)	128, 137, 329, 701
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	3 cut(s)	25, 387, 705
MmeI	TCCRAC	2 cut(s)	224, 298
MnlI	CCTC	2 cut(s)	245, 467
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	7 cut(s)	150, 186, 267, 615, 650, 740, 748
MslI	CAYNNNNRTG	3 cut(s)	44, 341, 491
Msp20I	TGGCCA	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	97, 500
MvaI	CCWGG	2 cut(s)	97, 500
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	1 cut(s)	118
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	4 cut(s)	17, 91, 530, 565
PagI	TCATGA	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	704
PfeI	GAWTC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	175
PleI	GAGTC	3 cut(s)	24, 386, 705
PpsI	GAGTC	3 cut(s)	24, 386, 705
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	95, 498
PspFI	CCCAGC	1 cut(s)	668
PspGI	CCWGG	2 cut(s)	95, 498
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	413
PspPPI	RGGWCCY	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	73, 546
RsaNI	GTAC	2 cut(s)	72, 545
RseI	CAYNNNNRTG	3 cut(s)	44, 341, 491
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	7 cut(s)	150, 186, 267, 615, 650, 740, 748
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	3 cut(s)	25, 387, 705
ScrFI	CCNGG	2 cut(s)	97, 500
SfaNI	GCATC	2 cut(s)	453, 492
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	3 cut(s)	44, 341, 491
Sse9I	AATT	4 cut(s)	128, 137, 329, 701
SspMI	CTAG	3 cut(s)	467, 507, 599
StyD4I	CCNGG	2 cut(s)	95, 498
StyI	CCWWGG	1 cut(s)	352
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	376, 424
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	4 cut(s)	128, 137, 329, 701
TatI	WGTACW	1 cut(s)	544
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	7 cut(s)	150, 186, 267, 615, 650, 740, 748
Tru9I	TTAA	7 cut(s)	150, 186, 267, 615, 650, 740, 748
TscAI	CASTG	4 cut(s)	219, 484, 535, 721
TseFI	GTSAC	4 cut(s)	17, 91, 530, 565
Tsp45I	GTSAC	4 cut(s)	17, 91, 530, 565
TspDTI	ATGAA	2 cut(s)	285, 678
TspRI	CASTG	4 cut(s)	219, 484, 535, 721
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	128, 137
XmnI	GAANNNNTTC	1 cut(s)	704
XspI	CTAG	3 cut(s)	467, 507, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.