Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Reverse (-)

23313308 .. 23318529

Gene Structure 5222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29800.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAATCCTATGGATTTCATCGAGTCACTCGATCCTCAGATCCTCGTGGGTGTATCTGTTGCTTTTGTGGTCATTGTTGCTGCAGCTTTTCTCTTCTCCTCCAAGAAGCCGAAAGGTTGCTTAGATCCCCAGAATTTCAAGGACTTCAAACTTGTCAAGCGCACACAATTGAGCCACAATGTGGCAAAGTTCAAATTTGAACTTCTGACATCGACTTCAATTTTAGGTCTTCCAATTGGACAACACATAAGTTGTAGGGGCAAGGATAGCCAAGGTGAAGAGGTTATCAAACCATATACCCCAACCACATTGGATTCTGATGTTGGATACTTTGAACTAGTGATAAAGATGTATCCTCAAGGAAGAATGTCACACCATTTCCGTGAGATGCGTGTTGGAGATCATCTTGCTGTCAAGGGACCCAAGGGCCGTTTCAAGTATGAACCTGGCCAAGTTAGAGCTTTTGGGATGCTTGCTGGAGGCTCTGGAATCACTCCGATGTTCCAGGTTGCTAGGGCAATATTAGAAAATCCCAAAGACAAAACAAGGGTTCACCTGATCTATGCCAACGTGACACACGAGGACATTCTCTTAAAGGATGAGTTGGATGGCCTTGCTACTACCTACCCTGATCGCTTTCAAATCTTCTACGTATTGAACCAGGTTAGTTGCGTTGCTCGTTCAGTAATTTCTAAACAATTTTTTTTTCTCCTATACTTCTTACTGTCTTGTTGCTCAATAAATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

250

Amino Acids

28.0

Weight (kDa)

9.02

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	49 - 147	3.2e-33	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	157 - 221	6.5e-18	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AclWI	GGATC	3 cut(s)	26, 34, 119
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	2 cut(s)	133, 194
AdeI	CACNNNGTG	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	9 cut(s)	139, 148, 193, 200, 219, 335, 436, 641, 658
AhlI	ACTAGT	1 cut(s)	337
AjnI	CCWGG	3 cut(s)	445, 504, 660
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	2 cut(s)	86, 461
AluI	AGCT	2 cut(s)	86, 461
AlwI	GGATC	3 cut(s)	26, 34, 119
AoxI	GGCC	3 cut(s)	427, 448, 610
ApeKI	GCWGC	2 cut(s)	80, 83
ApoI	RAATTY	2 cut(s)	133, 194
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	419, 427
AsuHPI	GGTGA	2 cut(s)	287, 545
AvaII	GGWCC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	450
BauI	CACGAG	2 cut(s)	44, 578
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	67, 95
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	3 cut(s)	447, 506, 662
BciVI	GTATCC	2 cut(s)	320, 363
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	2 cut(s)	338, 513
BfmI	CTRYAG	1 cut(s)	81
BfuI	GTATCC	2 cut(s)	320, 363
BisI	GCNGC	2 cut(s)	81, 84
BlsI	GCNGC	2 cut(s)	82, 85
Bme1390I	CCNGG	3 cut(s)	447, 506, 662
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	419, 427
BmiI	GGNNCC	2 cut(s)	420, 421
BmrFI	CCNGG	3 cut(s)	447, 506, 662
BmsI	GCATC	2 cut(s)	378, 459
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	271, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	3 cut(s)	447, 506, 662
BseDI	CCNNGG	2 cut(s)	271, 423
BseGI	GGATG	3 cut(s)	474, 604, 613
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	67, 95
BshFI	GGCC	3 cut(s)	429, 450, 612
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	3 cut(s)	429, 450, 612
Bsp143I	GATC	6 cut(s)	31, 39, 124, 400, 558, 631
BspANI	GGCC	3 cut(s)	429, 450, 612
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	420, 421
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	3 cut(s)	26, 34, 119
BssECI	CCNNGG	2 cut(s)	271, 423
BssMI	GATC	6 cut(s)	31, 39, 124, 400, 558, 631
BssSI	CACGAG	2 cut(s)	44, 578
BssT1I	CCWWGG	2 cut(s)	271, 423
Bst2BI	CACGAG	2 cut(s)	44, 578
Bst2UI	CCWGG	3 cut(s)	447, 506, 662
Bst4CI	ACNGT	1 cut(s)	726
Bst6I	CTCTTC	2 cut(s)	98, 273
BstBAI	YACGTR	1 cut(s)	652
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	36, 121
BstF5I	GGATG	3 cut(s)	474, 604, 613
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	6 cut(s)	34, 42, 127, 403, 561, 634
BstMBI	GATC	6 cut(s)	31, 39, 124, 400, 558, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	3 cut(s)	447, 506, 662
BstSCI	CCNGG	3 cut(s)	445, 504, 660
BstSFI	CTRYAG	1 cut(s)	81
BstSNI	TACGTA	1 cut(s)	652
BstV1I	GCAGC	2 cut(s)	67, 95
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	39, 124
BstYI	RGATCY	2 cut(s)	39, 124
BsuI	GTATCC	2 cut(s)	320, 363
BsuRI	GGCC	3 cut(s)	429, 450, 612
BtsCI	GGATG	3 cut(s)	474, 604, 613
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	419, 427
CsiI	ACCWGGT	1 cut(s)	660
CviJI	RGCY	9 cut(s)	86, 109, 174, 270, 429, 450, 461, 483, 612
CviKI_1	RGCY	9 cut(s)	86, 109, 174, 270, 429, 450, 461, 483, 612
DdeI	CTNAG	2 cut(s)	36, 121
DpnI	GATC	6 cut(s)	33, 41, 126, 402, 560, 633
DpnII	GATC	6 cut(s)	31, 39, 124, 400, 558, 631
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	98, 273
EarI	CTCTTC	2 cut(s)	98, 273
Eco105I	TACGTA	1 cut(s)	652
Eco130I	CCWWGG	2 cut(s)	271, 423
Eco47I	GGWCC	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	3 cut(s)	445, 504, 660
EcoT14I	CCWWGG	2 cut(s)	271, 423
ErhI	CCWWGG	2 cut(s)	271, 423
FaiI	YATR	9 cut(s)	11, 248, 295, 297, 441, 564, 715, 746, 748
FaqI	GGGAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	81, 84
FokI	GGATG	3 cut(s)	481, 611, 620
Fsp4HI	GCNGC	2 cut(s)	81, 84
FspBI	CTAG	2 cut(s)	338, 513
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	81, 84
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	429, 450, 612
HhaI	GCGC	1 cut(s)	162
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	4 cut(s)	4, 23, 314, 489
HphI	GGTGA	2 cut(s)	287, 545
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	4 cut(s)	39, 207, 319, 498
Hpy188III	TCNNGA	1 cut(s)	486
Hpy8I	GTNNAC	1 cut(s)	553
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4IV	ACGT	2 cut(s)	570, 651
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	2 cut(s)	36, 121
HpySE526I	ACGT	2 cut(s)	570, 651
HspAI	GCGC	1 cut(s)	160
KflI	GGGWCCC	1 cut(s)	419
Kzo9I	GATC	6 cut(s)	31, 39, 124, 400, 558, 631
Lsp1109I	GCAGC	2 cut(s)	67, 95
LweI	GCATC	2 cut(s)	378, 459
MabI	ACCWGGT	1 cut(s)	660
MaeI	CTAG	2 cut(s)	338, 513
MaeII	ACGT	2 cut(s)	570, 651
MaeIII	GTNAC	3 cut(s)	24, 369, 571
MalI	GATC	6 cut(s)	33, 41, 126, 402, 560, 633
MboI	GATC	6 cut(s)	31, 39, 124, 400, 558, 631
MboII	GAAGA	5 cut(s)	85, 221, 290, 375, 637
MfeI	CAATTG	2 cut(s)	167, 234
MflI	RGATCY	2 cut(s)	39, 124
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	7 cut(s)	133, 167, 194, 219, 234, 687, 698
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	3 cut(s)	304, 376, 585
MnlI	CCTC	7 cut(s)	45, 53, 109, 274, 366, 473, 574
Mox20I	TGGCCA	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	2 cut(s)	381, 497
Msp20I	TGGCCA	1 cut(s)	450
MspR9I	CCNGG	3 cut(s)	447, 506, 662
MunI	CAATTG	2 cut(s)	167, 234
MvaI	CCWGG	3 cut(s)	447, 506, 662
MwoI	GCNNNNNNNGC	1 cut(s)	267
NdeII	GATC	6 cut(s)	31, 39, 124, 400, 558, 631
NlaIV	GGNNCC	2 cut(s)	420, 421
NmuCI	GTSAC	3 cut(s)	24, 369, 571
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 576
PfeI	GAWTC	3 cut(s)	4, 314, 489
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	82, 85
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	3 cut(s)	445, 504, 660
PspGI	CCWGG	3 cut(s)	445, 504, 660
PspN4I	GGNNCC	2 cut(s)	420, 421
PspPI	GGNCC	2 cut(s)	419, 427
PspPPI	RGGWCCY	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	39, 124
RseI	CAYNNNNRTG	2 cut(s)	381, 497
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	2 cut(s)	81, 84
Sau3AI	GATC	6 cut(s)	31, 39, 124, 400, 558, 631
Sau96I	GGNCC	2 cut(s)	419, 427
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	447, 506, 662
SexAI	ACCWGGT	1 cut(s)	660
SfaNI	GCATC	2 cut(s)	378, 459
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	381, 497
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
SnaBI	TACGTA	1 cut(s)	652
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	7 cut(s)	133, 167, 194, 219, 234, 687, 698
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	2 cut(s)	338, 513
StyD4I	CCNGG	3 cut(s)	445, 504, 660
StyI	CCWWGG	2 cut(s)	271, 423
TaaI	ACNGT	1 cut(s)	726
TaiI	ACGT	2 cut(s)	573, 654
TaqI	TCGA	3 cut(s)	21, 30, 212
TasI	AATT	7 cut(s)	133, 167, 194, 219, 234, 687, 698
TfiI	GAWTC	3 cut(s)	4, 314, 489
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TseFI	GTSAC	3 cut(s)	24, 369, 571
TseI	GCWGC	2 cut(s)	80, 83
Tsp45I	GTSAC	3 cut(s)	24, 369, 571
TspDTI	ATGAA	3 cut(s)	7, 17, 456
TspGWI	ACGGA	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	2 cut(s)	133, 194
XspI	CTAG	2 cut(s)	338, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.