Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Forward (+)

47810125 .. 47815793

Gene Structure 5669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG338800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCTGTGTTACAGAGTCACAGAGCAGAAATGCTGAGCATAGCCGTGGCCGTAGTCGCCATTGGTGTTGGTACGGCCTACTATTTCTACGTCACCAGGAAACCAAAAGGTTGCTTGGATCCTGAGAAATTCAAGGAATTCAAACTTGTTAAACGCACTCAGCTCAGCCATAATGTGGCTAAGTTTAAGTTTTCTCTTCCAACAGCAACATCAGTGTTCGGTCTGCCTATTGGACAGCATATAAGTTGCAGAGGAAAAGATAGTCTTAATGAAGAAGTTATCAAAGCATATACCCCAACCACTTTGGATACAGATGTTGGATACTTTGAATTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCTCACCATTTTCGAGTCATGAGTGAAGGTGATTATCTCGCTGTAAAAGGACCTAAGGGTCGATTCAAGTATCAGCCTAACCAAGTTAGAGCTTTTGGGATGCTAGCTGGAGGCACTGGCATCACTCCAATGTTCCAGGTTGCTAGAGCCATAATGGAAAATCCCAGTGACAGAACGAATGTACATCTCATATATGGCAATGTCACATATGATGACATTCTATTGAAAGAAGAGCTAGATAATCTGGCCATTAACTTTCCCAATCGTTTCAACATTTATTATGTTTTAAATCAGCCCCCTGAAGGCTGGGAAGGTGGTGTTGGGTTCATATCAAAAGAAATTATTCAGACTCACTGCCCTGCACCAGCACCCGATATTAAGATTTTAAGATGCGGACCACCACCTATGAACAAGGCTATGGCTGCTAACCTGGACAGTCTTGGATACAGTTCGGAGATGCAGTTCCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

278

Amino Acids

31.08

Weight (kDa)

8.89

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	47 - 145	2.6e-31	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	155 - 261	2.2e-30	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	420
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	1 cut(s)	756
AclWI	GGATC	2 cut(s)	113, 126
AcoI	YGGCCR	2 cut(s)	48, 609
AcsI	RAATTY	2 cut(s)	128, 137
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	2 cut(s)	73, 546
AfiI	CCNNNNNNNGG	3 cut(s)	175, 357, 665
AgsI	TTSAA	6 cut(s)	133, 142, 329, 430, 589, 634
AjnI	CCWGG	3 cut(s)	95, 498, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AloI	GAACNNNNNNTCC	1 cut(s)	809
AluBI	AGCT	4 cut(s)	163, 455, 470, 598
AluI	AGCT	4 cut(s)	163, 455, 470, 598
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	113, 126
AoxI	GGCC	3 cut(s)	48, 75, 609
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	2 cut(s)	128, 137
Asp700I	GAANNNNTTC	1 cut(s)	705
AspS9I	GGNCC	2 cut(s)	413, 758
AsuHPI	GGTGA	3 cut(s)	85, 359, 404
AsuNHI	GCTAGC	1 cut(s)	466
AvaII	GGWCC	2 cut(s)	413, 758
AxyI	CCTNAGG	1 cut(s)	417
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BalI	TGGCCA	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	772
BceAI	ACGGC	3 cut(s)	29, 35, 90
BciT130I	CCWGG	3 cut(s)	97, 500, 794
BciVI	GTATCC	4 cut(s)	301, 314, 357, 800
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	3 cut(s)	467, 507, 599
BfuI	GTATCC	4 cut(s)	301, 314, 357, 800
BisI	GCNGC	1 cut(s)	786
BlpI	GCTNAGC	2 cut(s)	35, 164
BlsI	GCNGC	1 cut(s)	787
Bme1390I	CCNGG	3 cut(s)	97, 500, 794
Bme18I	GGWCC	2 cut(s)	413, 758
BmgT120I	GGNCC	2 cut(s)	413, 758
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	3 cut(s)	97, 500, 794
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	4 cut(s)	453, 492, 743, 810
BmtI	GCTAGC	1 cut(s)	470
BmuI	ACTGGG	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	2 cut(s)	35, 164
BsaJI	CCNNGG	2 cut(s)	45, 352
BsaXI	ACNNNNNCTCC	1 cut(s)	809
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 357, 665
Bse1I	ACTGG	3 cut(s)	484, 528, 829
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	3 cut(s)	97, 500, 794
BseDI	CCNNGG	2 cut(s)	45, 352
BseGI	GGATG	2 cut(s)	366, 468
BseLI	CCNNNNNNNGG	3 cut(s)	175, 357, 665
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	4 cut(s)	26, 114, 173, 178
BseNI	ACTGG	3 cut(s)	484, 528, 829
BseXI	GCAGC	1 cut(s)	772
BseYI	CCCAGC	1 cut(s)	669
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	3 cut(s)	50, 77, 611
BslI	CCNNNNNNNGG	3 cut(s)	175, 357, 665
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	3 cut(s)	50, 77, 611
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	1 cut(s)	118
Bsp1720I	GCTNAGC	2 cut(s)	35, 164
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	3 cut(s)	50, 77, 611
BspCNI	CTCAG	4 cut(s)	27, 115, 172, 177
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	120
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	2 cut(s)	113, 126
BspQI	GCTCTTC	1 cut(s)	588
BsrDI	GCAATG	1 cut(s)	568
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	484, 528, 829
BssECI	CCNNGG	2 cut(s)	45, 352
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	3 cut(s)	97, 500, 794
Bst4CI	ACNGT	2 cut(s)	800, 812
Bst6I	CTCTTC	2 cut(s)	201, 588
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	6 cut(s)	35, 123, 159, 164, 180, 417
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	366, 468
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 785
BstNI	CCWGG	3 cut(s)	97, 500, 794
BstSCI	CCNGG	3 cut(s)	95, 498, 792
BstV1I	GCAGC	1 cut(s)	772
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	417
BsuI	GTATCC	4 cut(s)	301, 314, 357, 800
BsuRI	GGCC	3 cut(s)	50, 77, 611
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	366, 468
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	4 cut(s)	219, 477, 535, 715
Cac8I	GCNNGC	1 cut(s)	468
CciI	TCATGA	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	413, 758
Csp6I	GTAC	2 cut(s)	72, 545
CviAII	CATG	1 cut(s)	382
CviQI	GTAC	2 cut(s)	72, 545
DdeI	CTNAG	6 cut(s)	35, 123, 159, 164, 180, 417
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DraI	TTTAAA	1 cut(s)	651
DrdI	GACNNNNNNGTC	1 cut(s)	420
DseDI	GACNNNNNNGTC	1 cut(s)	420
EaeI	YGGCCR	2 cut(s)	48, 609
Eam1104I	CTCTTC	2 cut(s)	201, 588
EarI	CTCTTC	2 cut(s)	201, 588
Eco130I	CCWWGG	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	413, 758
Eco57I	CTGAAG	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	3 cut(s)	95, 498, 792
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	385
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	1 cut(s)	381
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	2 cut(s)	373, 475
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	3 cut(s)	467, 507, 599
GluI	GCNGC	1 cut(s)	786
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	50, 77, 611
Hin1II	CATG	1 cut(s)	385
HinfI	GANTC	4 cut(s)	16, 378, 426, 712
HphI	GGTGA	3 cut(s)	85, 359, 404
Hpy188I	TCNGA	2 cut(s)	711, 817
Hpy188III	TCNNGA	2 cut(s)	122, 382
HpyAV	CCTTC	4 cut(s)	351, 383, 659, 668
HpyCH4III	ACNGT	2 cut(s)	800, 812
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	249, 725, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 785
HpyF3I	CTNAG	6 cut(s)	35, 123, 159, 164, 180, 417
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	588
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	4 cut(s)	453, 492, 743, 810
MaeI	CTAG	3 cut(s)	467, 507, 599
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	5 cut(s)	9, 17, 91, 530, 565
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	188, 284, 605
MflI	RGATCY	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	4 cut(s)	128, 137, 329, 702
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	3 cut(s)	25, 387, 706
MmeI	TCCRAC	2 cut(s)	224, 298
MnlI	CCTC	2 cut(s)	245, 467
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	8 cut(s)	150, 186, 267, 615, 650, 741, 749, 835
MslI	CAYNNNNRTG	3 cut(s)	44, 341, 491
Msp20I	TGGCCA	1 cut(s)	611
MspR9I	CCNGG	3 cut(s)	97, 500, 794
MvaI	CCWGG	3 cut(s)	97, 500, 794
MwoI	GCNNNNNNNGC	2 cut(s)	56, 785
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	1 cut(s)	118
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	4 cut(s)	17, 91, 530, 565
PagI	TCATGA	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	3 cut(s)	24, 386, 706
PpsI	GAGTC	3 cut(s)	24, 386, 706
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	95, 498, 792
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	3 cut(s)	95, 498, 792
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	413, 758
PspPPI	RGGWCCY	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	73, 546
RsaNI	GTAC	2 cut(s)	72, 545
RseI	CAYNNNNRTG	3 cut(s)	44, 341, 491
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	8 cut(s)	150, 186, 267, 615, 650, 741, 749, 835
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	2 cut(s)	413, 758
SchI	GAGTC	3 cut(s)	25, 387, 706
ScrFI	CCNGG	3 cut(s)	97, 500, 794
SfaNI	GCATC	4 cut(s)	453, 492, 743, 810
SinI	GGWCC	2 cut(s)	413, 758
SmiMI	CAYNNNNRTG	3 cut(s)	44, 341, 491
Sse9I	AATT	4 cut(s)	128, 137, 329, 702
SsiI	CCGC	1 cut(s)	756
SspMI	CTAG	3 cut(s)	467, 507, 599
StyD4I	CCNGG	3 cut(s)	95, 498, 792
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	2 cut(s)	800, 812
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	376, 424
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	4 cut(s)	128, 137, 329, 702
TatI	WGTACW	1 cut(s)	544
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	8 cut(s)	150, 186, 267, 615, 650, 741, 749, 835
Tru9I	TTAA	8 cut(s)	150, 186, 267, 615, 650, 741, 749, 835
TscAI	CASTG	4 cut(s)	219, 484, 535, 722
TseFI	GTSAC	4 cut(s)	17, 91, 530, 565
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	4 cut(s)	17, 91, 530, 565
TspDTI	ATGAA	3 cut(s)	285, 679, 785
TspRI	CASTG	4 cut(s)	219, 484, 535, 722
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	413, 758
XapI	RAATTY	2 cut(s)	128, 137
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	3 cut(s)	467, 507, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.