Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Forward (+)

13426333 .. 13433819

Gene Structure 7487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G154300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGATGTGTTACAGAGCCACCGAGCAGAAATGCTAACCATAGCAATGGCTGTGGTGGCTATTGGTGTTGGTACGGCCTACTACTTCTACGTCACCAAGAAACCAAAAGGTTGCTTGGATCCTGAGAAATTCAAGGAATTTAAACTTGTTAAACGCATTCAGCTCAGCCACAATGTGGCTAAATTTAAATTTGCTCTTCCAACACCAACATCAGTGTTGGGACTTCCTATTGGACAGCATATTAGTTGCAGAGGAAAAGATAGCCTTAATGAAGACGTTGTCAAACCATATACCCCAACAACTTTGGATTCAGATGTTGGATACTTTGAATTAGTCATAAAGATGTATCCACAAGGAAGGATGTCTCACCATTTTCAAGTGATGCGTGAAGGTGACTATCTGGCGGTAAAAGGACCTAAGGGACGATTCAAGTATCAGCCTAACCAAGTTAGAGCTTTTGGGATGCTAGCTGGAGGCACTGGCATCACTCCGATGTTCCAGGTTGCTAGAGCCATATTGGAAAATCCCAGTGACAGAACAAATGTACATCTTATATATGCCAATGTCACATATGAGGACATTCTATTGAAAGAAGAGTTGGATAATCTTTCCAGTAACTTTCCCAATCGTTTCAAAATTTATTATGTTTTGAATCAGCCTCCTGAAATTTGGGAAGGTGGTGTCGGGTTCATATCAAAGGAAATTATTCAAACTTACTGCCCTGCACCAGCACCTGATATTAAGATTTTAAGATGTGGGCCACCACCCATGAACAAAGCTATGGCTGCTAACCTCGAGAGTCTGGGATACAGTCCGGAAATGCAGTTCCAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

279

Amino Acids

31.28

Weight (kDa)

8.87

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccIII	TCCGGA	1 cut(s)	814
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	2 cut(s)	113, 126
AcsI	RAATTY	6 cut(s)	128, 137, 182, 188, 636, 666
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	2 cut(s)	73, 546
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	8 cut(s)	133, 329, 377, 430, 589, 634, 652, 710
AjnI	CCWGG	1 cut(s)	498
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AloI	GAACNNNNNNTCC	1 cut(s)	809
AluBI	AGCT	4 cut(s)	163, 455, 470, 779
AluI	AGCT	4 cut(s)	163, 455, 470, 779
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	113, 126
AlwNI	CAGNNNCTG	1 cut(s)	734
Ama87I	CYCGRG	1 cut(s)	794
Aor13HI	TCCGGA	1 cut(s)	814
AoxI	GGCC	2 cut(s)	75, 758
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	6 cut(s)	128, 137, 182, 188, 636, 666
Asp700I	GAANNNNTTC	1 cut(s)	705
AspS9I	GGNCC	2 cut(s)	413, 758
AsuHPI	GGTGA	3 cut(s)	85, 359, 404
AsuNHI	GCTAGC	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	794
AvaII	GGWCC	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	417
BamHI	GGATCC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	772
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	500
BciVI	GTATCC	3 cut(s)	314, 357, 800
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	467, 507
BfuI	GTATCC	3 cut(s)	314, 357, 800
BisI	GCNGC	1 cut(s)	786
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	787
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	794
BmgT120I	GGNCC	2 cut(s)	413, 758
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	500
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	3 cut(s)	372, 453, 492
BmtI	GCTAGC	1 cut(s)	470
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	814
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	4 cut(s)	484, 528, 612, 829
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	814
BseBI	CCWGG	1 cut(s)	500
BseGI	GGATG	3 cut(s)	10, 366, 468
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	114, 178
BseNI	ACTGG	4 cut(s)	484, 528, 612, 829
BseXI	GCAGC	1 cut(s)	772
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	77, 760
BsiHKCI	CYCGRG	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	815
BslFI	GGGAC	2 cut(s)	234, 435
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	2 cut(s)	234, 435
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	77, 760
BsoBI	CYCGRG	1 cut(s)	794
Bsp13I	TCCGGA	1 cut(s)	814
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	1 cut(s)	118
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	2 cut(s)	77, 760
BspCNI	CTCAG	2 cut(s)	115, 177
BspEI	TCCGGA	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	120
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	2 cut(s)	113, 126
BspQI	GCTCTTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	4 cut(s)	484, 528, 612, 829
BssMI	GATC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	812
Bst6I	CTCTTC	2 cut(s)	201, 588
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	3 cut(s)	123, 164, 417
BstF5I	GGATG	3 cut(s)	10, 366, 468
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 785
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	417
BsuI	GTATCC	3 cut(s)	314, 357, 800
BsuRI	GGCC	2 cut(s)	77, 760
BtsCI	GGATG	3 cut(s)	10, 366, 468
BtsIMutI	CAGTG	3 cut(s)	219, 477, 535
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	734
Cfr13I	GGNCC	2 cut(s)	413, 758
Csp6I	GTAC	2 cut(s)	72, 545
CspCI	CAANNNNNGTGG	2 cut(s)	33, 68
CviAII	CATG	1 cut(s)	769
CviQI	GTAC	2 cut(s)	72, 545
DdeI	CTNAG	3 cut(s)	123, 164, 417
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DraI	TTTAAA	2 cut(s)	142, 187
DraIII	CACNNNGTG	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	201, 588
EarI	CTCTTC	2 cut(s)	201, 588
Eco47I	GGWCC	1 cut(s)	413
Eco81I	CCTNAGG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	794
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	498
FaeI	CATG	1 cut(s)	772
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	234, 435
FatI	CATG	1 cut(s)	768
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	3 cut(s)	17, 373, 475
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	2 cut(s)	467, 507
GluI	GCNGC	1 cut(s)	786
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	77, 760
HapII	CCGG	1 cut(s)	815
Hin1II	CATG	1 cut(s)	772
HinfI	GANTC	4 cut(s)	308, 426, 652, 799
HpaII	CCGG	1 cut(s)	815
HphI	GGTGA	3 cut(s)	85, 359, 404
Hpy188I	TCNGA	2 cut(s)	313, 492
Hpy188III	TCNNGA	4 cut(s)	122, 662, 796, 815
HpyAV	CCTTC	3 cut(s)	351, 383, 668
HpyCH4III	ACNGT	1 cut(s)	812
HpyCH4IV	ACGT	2 cut(s)	90, 276
HpyCH4V	TGCA	3 cut(s)	249, 725, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 785
HpyF3I	CTNAG	3 cut(s)	123, 164, 417
HpySE526I	ACGT	2 cut(s)	90, 276
Hsp92II	CATG	1 cut(s)	772
Kpn2I	TCCGGA	1 cut(s)	814
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	201
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	3 cut(s)	372, 453, 492
MaeI	CTAG	2 cut(s)	467, 507
MaeII	ACGT	2 cut(s)	90, 276
MaeIII	GTNAC	6 cut(s)	9, 91, 392, 530, 565, 614
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	188, 284, 605
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	8 cut(s)	128, 137, 182, 188, 329, 636, 666, 702
MlyI	GAGTC	1 cut(s)	808
MmeI	TCCRAC	3 cut(s)	224, 298, 579
MnlI	CCTC	5 cut(s)	245, 467, 568, 669, 803
MroI	TCCGGA	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	6 cut(s)	141, 150, 186, 267, 741, 749
MslI	CAYNNNNRTG	3 cut(s)	44, 341, 491
MspI	CCGG	1 cut(s)	815
MspR9I	CCNGG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	2 cut(s)	56, 785
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	1 cut(s)	118
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	1 cut(s)	772
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	4 cut(s)	91, 392, 530, 565
PaeR7I	CTCGAG	1 cut(s)	794
PciSI	GCTCTTC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	3 cut(s)	308, 426, 652
PflFI	GACNNNGTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	1 cut(s)	807
PpsI	GAGTC	1 cut(s)	807
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	413, 758
PspPPI	RGGWCCY	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	734
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	2 cut(s)	73, 546
RsaNI	GTAC	2 cut(s)	72, 545
RseI	CAYNNNNRTG	3 cut(s)	44, 341, 491
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	6 cut(s)	141, 150, 186, 267, 741, 749
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	2 cut(s)	413, 758
SchI	GAGTC	1 cut(s)	808
ScrFI	CCNGG	1 cut(s)	500
SfaNI	GCATC	3 cut(s)	372, 453, 492
Sfr274I	CTCGAG	1 cut(s)	794
SinI	GGWCC	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	794
SmiI	ATTTAAAT	1 cut(s)	187
SmiMI	CAYNNNNRTG	3 cut(s)	44, 341, 491
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
Sse9I	AATT	8 cut(s)	128, 137, 182, 188, 329, 636, 666, 702
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	2 cut(s)	467, 507
StyD4I	CCNGG	1 cut(s)	498
SwaI	ATTTAAAT	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	812
TaiI	ACGT	2 cut(s)	93, 279
TaqI	TCGA	1 cut(s)	795
TasI	AATT	8 cut(s)	128, 137, 182, 188, 329, 636, 666, 702
TatI	WGTACW	1 cut(s)	544
TfiI	GAWTC	3 cut(s)	308, 426, 652
Tru1I	TTAA	6 cut(s)	141, 150, 186, 267, 741, 749
Tru9I	TTAA	6 cut(s)	141, 150, 186, 267, 741, 749
TscAI	CASTG	3 cut(s)	219, 484, 535
TseFI	GTSAC	4 cut(s)	91, 392, 530, 565
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	4 cut(s)	91, 392, 530, 565
TspDTI	ATGAA	3 cut(s)	285, 679, 785
TspRI	CASTG	3 cut(s)	219, 484, 535
Tth111I	GACNNNGTC	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	6 cut(s)	128, 137, 182, 188, 636, 666
XhoI	CTCGAG	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	2 cut(s)	467, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.