Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Forward (+)

48574657 .. 48581006

Gene Structure 6350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG351200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCCTAACCAATTTGTCTGGTTAGGTTGCTTGGATCCTGAGAAATTCAAGGAATTCAAACTTGTTAAACGCACTCAGCTCAGCCATAATGTGGCTAAGTTTAAGTTTTCTCTTCCAACAGCAACATCAGTGTTCGGTCTGCCTATTGGACAGCATATAAGTTGCAGAGGAAAAGATAGTCTTAATGAAGAAGTTATCAAAGCATATACCCCAACCACTTTGGATACAGATGTTGGATACTTTGAATTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCTCACCATTTTCGAGTCATGAGTGAAGGTGATTATCTCGCTGTAAAAGGACCTAAGGGTCGATTCAAGTATCAGCCTAACCAAGTTAGAGCTTTTGGGATGCTAGCTGGAGGCACTGGCATCACTCCAATGTTCCAGGTTGCTAGAGCCATAATGGAAAATCCCAGTGACAGAACGAATGTACATCTCATATATGGCAATGTCACATATGATGACATTCTATTGAAAGTAAGCATATGTCTAGTTTCTGTTTGGTCAACACCTGTGATACCCAAAGTATCTATGTGTCCTTGTGCTTTATCTCTCTCTGTTTTTTTTTTTTTAATAATTTTTCAGTATTATGTTAAAGGCCTATTGACCACTTCTGGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

217

Amino Acids

24.38

Weight (kDa)

9.27

Isoelectric Point (pI)

24.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	19 - 117	1.5e-31	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	127 - 169	7.7e-12	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	336
AccB7I	CCANNNNNTGG	1 cut(s)	91
AclWI	GGATC	2 cut(s)	29, 42
AcsI	RAATTY	2 cut(s)	44, 53
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	2 cut(s)	91, 273
AgsI	TTSAA	5 cut(s)	49, 58, 245, 346, 505
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	3 cut(s)	79, 371, 386
AluI	AGCT	3 cut(s)	79, 371, 386
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	29, 42
AoxI	GGCC	1 cut(s)	628
ApoI	RAATTY	2 cut(s)	44, 53
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	275, 320
AsuNHI	GCTAGC	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	329
AxyI	CCTNAGG	1 cut(s)	333
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
BamHI	GGATCC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	416
BciVI	GTATCC	3 cut(s)	217, 230, 273
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	3 cut(s)	383, 423, 521
BfuI	GTATCC	3 cut(s)	217, 230, 273
BlpI	GCTNAGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	416
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	369, 408
BmtI	GCTAGC	1 cut(s)	386
BmuI	ACTGGG	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 273
Bse1I	ACTGG	2 cut(s)	400, 444
Bse21I	CCTNAGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	282, 384
BseLI	CCNNNNNNNGG	2 cut(s)	91, 273
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	3 cut(s)	30, 89, 94
BseNI	ACTGG	2 cut(s)	400, 444
BshFI	GGCC	1 cut(s)	630
BslI	CCNNNNNNNGG	2 cut(s)	91, 273
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	630
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	34
Bsp1720I	GCTNAGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	3 cut(s)	31, 88, 93
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	36
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	29, 42
BsrDI	GCAATG	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	400, 444
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	416
Bst6I	CTCTTC	1 cut(s)	117
BstAUI	TGTACA	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	5 cut(s)	39, 75, 80, 96, 333
BstF5I	GGATG	2 cut(s)	282, 384
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	333
BsuI	GTATCC	3 cut(s)	217, 230, 273
BsuRI	GGCC	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	282, 384
BtsIMutI	CAGTG	3 cut(s)	135, 393, 451
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	8 cut(s)	79, 84, 95, 355, 371, 386, 428, 630
CviKI_1	RGCY	8 cut(s)	79, 84, 95, 355, 371, 386, 428, 630
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	5 cut(s)	39, 75, 80, 96, 333
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DrdI	GACNNNNNNGTC	1 cut(s)	336
DseDI	GACNNNNNNGTC	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	268
Eco147I	AGGCCT	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	329
Eco81I	CCTNAGG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	1 cut(s)	301
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	1 cut(s)	297
FauNDI	CATATG	2 cut(s)	487, 515
FokI	GGATG	2 cut(s)	289, 391
FspBI	CTAG	3 cut(s)	383, 423, 521
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	630
Hin1II	CATG	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	2 cut(s)	294, 342
HphI	GGTGA	2 cut(s)	275, 320
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188III	TCNNGA	2 cut(s)	38, 298
Hpy8I	GTNNAC	1 cut(s)	537
HpyAV	CCTTC	2 cut(s)	267, 299
HpyCH4V	TGCA	1 cut(s)	165
HpyF3I	CTNAG	5 cut(s)	39, 75, 80, 96, 333
Hsp92II	CATG	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	4, 51, 372, 381, 401, 428, 457, 555, 630
LweI	GCATC	2 cut(s)	369, 408
MaeI	CTAG	3 cut(s)	383, 423, 521
MaeIII	GTNAC	2 cut(s)	446, 481
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	104, 200
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	5 cut(s)	11, 44, 53, 245, 606
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	2 cut(s)	140, 214
MnlI	CCTC	2 cut(s)	161, 383
MseI	TTAA	5 cut(s)	66, 102, 183, 602, 624
MslI	CAYNNNNRTG	2 cut(s)	257, 407
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
NdeI	CATATG	2 cut(s)	487, 515
NdeII	GATC	1 cut(s)	34
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	446, 481
PagI	TCATGA	1 cut(s)	297
PceI	AGGCCT	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	342
PflMI	CCANNNNNTGG	1 cut(s)	91
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	329
PspPPI	RGGWCCY	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	2 cut(s)	257, 407
SaqAI	TTAA	5 cut(s)	66, 102, 183, 602, 624
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	8 cut(s)	28, 81, 310, 334, 373, 388, 420, 544
SfaNI	GCATC	2 cut(s)	369, 408
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	257, 407
Sse9I	AATT	5 cut(s)	11, 44, 53, 245, 606
SseBI	AGGCCT	1 cut(s)	630
SspMI	CTAG	3 cut(s)	383, 423, 521
StuI	AGGCCT	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	268
TaqI	TCGA	2 cut(s)	292, 340
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	5 cut(s)	11, 44, 53, 245, 606
TatI	WGTACW	1 cut(s)	460
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	5 cut(s)	66, 102, 183, 602, 624
Tru9I	TTAA	5 cut(s)	66, 102, 183, 602, 624
TscAI	CASTG	3 cut(s)	135, 400, 451
TseFI	GTSAC	2 cut(s)	446, 481
Tsp45I	GTSAC	2 cut(s)	446, 481
TspDTI	ATGAA	1 cut(s)	201
TspRI	CASTG	3 cut(s)	135, 400, 451
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	2 cut(s)	44, 53
XspI	CTAG	3 cut(s)	383, 423, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.